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Commit 836506a

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Dan Sun
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Updated benchmark input data package and set BLASTDB
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README.md

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To obtain all input data required to execute this benchmark, please [email](mailto:dan.sun@agresearch.co.nz) a Linux system administrator in AgResearch Ltd and ask for access to the [Globus share](https://app.globus.org/file-manager?origin_id=8d37b9ec-9ea1-11e9-a378-0a2653bc2660&origin_path=%2F) to download the input data via Globus.
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The input data is packaged in a tarball. Please place the downloaded tarball in the root directory of the benchmark suite and then use the following command to extract data from the tarball:
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The input data is packaged in a tarball (`benchmark_input_data.20190913.taz`). Please place the downloaded tarball in the root directory of the benchmark suite and then use the following command to extract data from the tarball:
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```
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$ cd $BENCHMARK_ROOT
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$ tar xzf benchmark_input_data.taz
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$ tar xzf benchmark_input_data.20190913.taz
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```

benchmark.env

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@@ -48,5 +48,7 @@ BWA_BLAST_CONDA_ENV_SPEC=$BENCHMARK_SOURCE/workflow/bwa-blast/bwa-blast-conda-en
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BWA_THREADS=16
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SAMTOOLS_THREADS=16
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BLAST_THREADS=16
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BLASTDB=$INPUT_DATA_ROOT_DIR/blast-bwa/blastdata
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export BWA_BLAST_CONDA_ENV
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export BWA_BLASTCONDA_ENV_SPEC
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export BLASTDB

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