From d91876682167426ad39f72d1b44540ef8137bcd6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Camilo=20Garc=C3=ADa?= <ca.garcia2@uniandes.edu.co>
Date: Mon, 9 Dec 2024 00:48:47 -0500
Subject: [PATCH] QuickFix: Refactor markovprobability function to assert
 DNAAlphabet type consistency in model and sequence

---
 src/transitions.jl | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/transitions.jl b/src/transitions.jl
index 90bf9f4..4b7a1f2 100644
--- a/src/transitions.jl
+++ b/src/transitions.jl
@@ -259,8 +259,8 @@ function markovprobability(
     seq::NucleicSeqOrView{A};
     model::BioMarkovChain{A}=ECOLICDS,
     logscale::Bool=true
-) where {A<:NucleicAcidAlphabet}
-    @assert Alphabet(model) == Alphabet(seq) "Sequence and model state space are inconsistent."
+) where {A<:DNAAlphabet}
+    @assert eltype(model) == eltype(seq) "Sequence and model state space are inconsistent."
     
     init = logscale ? log2(model.inits[_dna_to_int(seq[1])]) : model.inits[_dna_to_int(seq[1])]
     probability = init