partial_sampling_spatially_structured_population

Repository for my lab immersion on spatially structured populations with partial updates.

Slurm folder

Intended to be run on SCITAS clusters, each script writes a .json file with parameters and output data in ./results.

py well-mixed_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories]
py well-mixed_matrix_computation.py [job_array_nb] [N] [M] [log_s_min] [log_s_max]
py clique_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories] [migration_rate] [nb_colonies]
py cycle_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories] [migration_rate] [nb_colonies] [alpha]
py star_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories] [migration_rate] [nb_colonies] [alpha]