update doc

Author: aTrotier

docs/src/index.md

@@ -4,20 +4,25 @@ CurrentModule = SEQ_BRUKER_a_MP2RAGE_CS_360
 
 # SEQ\_BRUKER\_A\_MP2RAGE\_CS\_360
 
-SEQ_BRUKER_a_MP2RAGE_CS_360.jl is a Julia package that implements a reconstruction for an accelerated MP2RAGE sequence for Bruker scanner (**PV360-3.5**). 
+SEQ\_BRUKER\_a\_MP2RAGE\_CS\_360.jl is a Julia package that implements a reconstruction for an accelerated MP2RAGE sequence for Bruker scanner (**PV360-3.5**). 
 The reconstruction is performed using MRIReco.jl 
 
-More information and examples are available in the article [![][paper-img]][paper-url] and in the  [![][docs-img]][docs-url]
+More information and examples are available in the initial [article](https://img.shields.io/badge/doi-10.1002/mrm.27438-blue.svg)
 
-## How to give credit
+## Raw datasets
 
-If you use this package please acknowledge us by citing : https://doi.org/10.1002/mrm.27438
+The rawdata used in the example are stored on zenodo : https://zenodo.org/records/14046657
+- One is a fully sampled acquisition (128x128x96)
+- The other one is accelerated by a factor of 2
+```
+##$PVM_EncCSUndersampling=50
+##$PVM_EncCSCenterRatio=5
+```
 
-Additionally, if you use the sequence available in the MR sequence folder, please contact us to sign the sequence transfer agreement : aurelien.trotier@rmsb.u-bordeaux.fr
+They are used for each merge to generate the figures used in examples.
 
+## How to give credit
 
-[docs-img]: https://img.shields.io/badge/docs-latest%20release-blue.svg
-[docs-url]: https://crmsb.github.io/SEQ_BRUKER_a_MP2RAGE_CS_360/dev/
+If you use this package please acknowledge us by citing : https://doi.org/10.1002/mrm.27438
 
-[paper-img]: https://img.shields.io/badge/doi-10.1002/mrm.27438-blue.svg
-[paper-url]: https://doi.org/10.1002/mrm.27438
+Additionally, if you use the sequence available in the MR sequence folder, please contact us to sign the sequence transfer agreement : aurelien.trotier@rmsb.u-bordeaux.fr

docs/src/reconstruction.md

@@ -1,5 +1,7 @@
 
-# Package Installation
+# Installation and usage
+
+## Package Installation
 
 You can install the package in any project with the following command :
 
@@ -10,7 +12,7 @@ You can install the package in any project with the following command :
 - if you want to use the package in your script just add the following line : `using SEQ_BRUKER_a_MP2RAGE_CS_360`
 
 
-# How to use the package
+## How to use the package
 
 Follow the example in the [documentation](https://crmsb.github.io/SEQ_BRUKER_a_MP2RAGE_CS_360/dev/generated/examples/simple_reco/) 
 

docs/src/sequence.md

@@ -1,4 +1,4 @@
-# Bruker sequence and protocol
+# Sequence and protocols
 
 The sequence, implemented for **Bruker Paravision PV-360.3.5**, and the corresponding protocol for fully-sampled  is available in the folder  `MR sequence/PV-360.3.5`. 
 
@@ -12,16 +12,5 @@ Compressed-sensing implementation is available through the standard Bruker tab `
 
 ## Source code
 
-Source code is available in this private directory : https://github.com/aTrotier/a_MP2RAGE_CS_360
+Source code is available in this private directory : [https://github.com/aTrotier/a\_MP2RAGE\_CS\_360](https://github.com/aTrotier/a_MP2RAGE_CS_360)
 
-# Raw datasets
-
-The rawdata used in the example are stored on zenodo : https://zenodo.org/records/14046657
-- One is a fully sampled acquisition (128x128x96)
-- The other one is accelerated by a factor of 2
-```
-##$PVM_EncCSUndersampling=50
-##$PVM_EncCSCenterRatio=5
-```
-
-They are used for each merge to generate the figures used in examples.