Dockerfile

FROM rocker/shiny:4.4.2

RUN apt-get update && apt-get install -y \
  --no-install-recommends \
  git-core \
  libssl-dev \
  libcurl4-gnutls-dev \
  curl \
  libsodium-dev \
  libxml2-dev \
  libicu-dev \
  && apt-get clean \
  && rm -rf /var/lib/apt/lists/*

ENV _R_SHLIB_STRIP_=true
ENV SHINY_LOG_STDERR=1

RUN install2.r --error --skipinstalled \
  shiny \
  shinyjs \
  shinyWidgets \
  jsonlite \
  ggplot2 \
  htmltools \
  drc \
  DT \
  httr \
  agricolae \
  broom \
  readxl \
  openxlsx \
  purrr \
  png \
  RColorBrewer \
  remotes \
  xml2 \
  xlsx \
  openssl \
  ggpmisc \
  jose \
  R6 \
  cowplot \
  car \
  equatiomatic \
  quarto

USER shiny
COPY ./bs/R ./myapp
# is not needed anymore
RUN mkdir /home/shiny/results 


COPY ./MTT/ /home/MTT
COPY ./comeln/ /home/comeln
COPY ./bs/ /home/bs
USER root
RUN bash -c "cd /home/MTT; R CMD INSTALL ."
RUN bash -c "cd /home/comeln; R CMD INSTALL ."
RUN bash -c "cd /home/bs; R CMD INSTALL ."

EXPOSE 4001
COPY ./Start_Server_App.R /srv/shiny-server/app.R
COPY ./run.sh .

ENV SHINY_LOG_STDERR=1

CMD ["/bin/bash", "-c", "./run.sh"]