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v68.0

23 Apr 23:40
@caseylitton caseylitton
v68.0
30b6844
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v68.0 
01. ENCD-3965 Update to snovault 1.0.6 (#2209)
02. ENCD-3934 fix plate location in library (#2208)
03. ENCD-3944 Add organ slim shims & update ontology.json (#2201)
04. ENCD-3934 Update to original 3934 commit (#2207)
05. ENCD-3739 rewriting chip control read depth audit (#2188)
06. ENCD-3775-started-to-in-progress (#2202)
07. ENCD-3451 Summary page (#2200)
08. ENCD-2992 Remove unused status (#2206)
09. ENCD-3960 Fix batch download lookup column test (#2205)
10. ENCD-3935 adding new biosample type "single cell" (#2193)
11. ENCD-3898 adding an audit flagging "tagging" GM without characterization (#2187)
12. ENCD-3886 Update deploy machine instance types (#2181)
13. ENCD-3863 Eliminate repeated values in report TSV (#2136)
14. ENCD-3938 Adding new Series type "AggregateSeries" (#2190)
15. ENCD-3934 adding "barcode_details" to library schema (#2197)
16. ENCD-3189 Traverse root using external_accession key from files (#2178)
17. ENCD-3645 & ENCD-3716 Strip white spaces from values (#2194)
18. ENCD-3716 Strip white spaces from values (#2194)
19. ENCD-3773-pipeline-status (#2189)
20. ENCD-3870-publication-status-mixin (#2191)
21. ENCD-3780-remove-ready-for-review (#2192)
22. ENCD-3772-remove-virtual (#2195)
23. ENCD-1 Add treatments amount, duration to metadata.tsv
24. ENCD-2845 Quick fix for biosamples with both the sexes
25. ENCD-3868 - Adding unit tests for batch_download helpers
26. ENCD-3823 & ENCD-3864 - Filter out restricted files and refactor batch_download
27. ENCD-3864 - Filter out restricted files and refactor batch_download
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v67.1

26 Mar 22:22
@caseylitton caseylitton
v67.1
12ad003
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v67.1 
1. ENCD-3916 Fix for broken metadata queries (#2179)
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v67.0

26 Mar 22:21
@caseylitton caseylitton
v67.0
fc0b26c
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v67.0 
01. ENCD-3915 Remove chromedriver lock from Travis (#2174)
02. ENCD-3892 Update to snovault 1.0.5 (#2173)
03. ENCD-3809 Add run_types for pacbio and oxford nanopore (#2172)
04. ENCD-3839 Remove schemas for the deleted objects (#2167)
05. ENCD-3891 Fix file test for duplicates in derived_from (#2162)
06. ENCD-3908 Update indexer doc for march 2018 update
07. ENCD-3913 Update regionsearch MAX_CLAUSES request_timeout
08. ENCD-3900 Increase demo volume size
09. ENCD-3756 Remove scorefilter in dnase visuals
10. ENCD-3907 Adopting UCSC bigNarrowPeak type
11. ENCD-3260 Refactor visualization
12. ENCD-3602 Migrate indexers to region and secondary
13. ENCD-3894 Move NIH cert audit to experiment (#2166)
14. ENCD-3840 Add link to linkFrom linkTo schema properties (#2168)
15. ENCD-3899 Fix exp audit trigger on non-encode pipelines (#2170)
16. ENCD-3604 Update boost to include GM accessions (#2171)
17. ENCD-3848 Remove immortalize from cell line (#2164)
18. ENCD-3854 Fix report description column sort error (#2150)
19. ENCD-3893 Add NIH cert to biosample facets (#2165)
20. ENCD-3828 Update redacted alignments (#2163)
21. ENCD-3841 Add collapsing sections on schema pages (#2154)
22. ENCD-3880 Add Alembic documentation (#2152)
23. ENCD-3821 Show biosample characterization doc links (#2145)
24. ENCD-3882 Update DOI preferred resolver url (#2135)
25. ENCD-3879 Pin Alembic version (#2151)
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v66.0

10 Mar 00:45
@caseylitton caseylitton
v66.0
63c2f50
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v66.0 
1. ENCD-3878 Update to snovault version 1.0.4 (#2148)
2. ENCD-3834 Add Alembic framework for Postgres migrations (#2142)
3. ENCD-3869 Downgrade chromedriver version 2.33 (#2143)
4. ENCD-3827 Fix ES5 version in README (#2141)
5. ENCD-3698 Add Institutional certifications to biosample (#2140)
6. ENCD-1934 Format schema displays (#2115)
7. ENCD-3865 Update to snovault version 1.0.3 (#2139)
8. ENCD-3836 Small heap single machine (#2137)
9. ENCD-3819 Add biosample preservation method (#2122)
10. ENCD-3835 Fix inconsistent platforms audit HiSeq2K 2.5K (#2133)
11. ENCD-3341 Add new output_types to file json (#2132)
12. ENCD-3853 Remove UCSC logos (#2134)
13. ENCD-3757 Adjust histone broad peak read depth audit (#2125)
14. ENCD-3831 Add exp audit to flag standards violations (#2124)
15. ENCD-3766 Add submitter comments to certain js pages (#2123)
16. ENCD-3820 Biosample: PMI property (#2120)
17. ENCD-3798 Ontology Update Jan2018 (#2119)
18. ENCD-3816 Update selenium version to 3.8.1 (#2118)
19. ENCD-3803 Allow fastq_sig to accept 3 in SRR headers (#2113)
20. ENCD-3456 Stringify array and object items in a cell (#2111)
21. ENCD-3762 Add RegulomeDB internal_tag and badge (#2110)
22. ENCD-3421 Properly link home chart to matrix (#2108)
23. ENCD-2567 New report page column selector modal (#2105)
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v65.3

13 Feb 22:24
@caseylitton caseylitton
v65.3
f457944
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v65.3

All changes since previous release.

v65.3

  1. ENCD-3851 Add max clause es5 updates (#2130)

v65.2
02. Update to snovault 1.0.2 (#2128) <- [ENCD-3845]

v65.1
03. ENCD-3813 Update to snovault 1.0.1 (#2116)

v65rc2
04. ENCD-3815 Fix tests for facet aggregation set to 200 (#2109)
05. ENCD-3795 Fix spelling in histone and idr qm jsons (#2104)
06. ENCD-3810 Set facet aggregation to 200 in search (#2107)

v65rc1
07. ENCD 3749: Update README for ES5 and dependency requirements (#2087)
08. ENCD-3741 Search for objects based on associated grant number (#2103)
09. ENCD-3792 Add histone_chip_quality_metric PIP-198 (#2101)
10. Update to snovault v1.0.0 <- [ENCD-3788]
11. ENCD-3745 Add platform to file and exp facets (#2088)
12. ENCD-3765 Set max_result_window for annotations index (#2083)
13. ENCD-2488 ES5 Update aka RM3910
14. ENCD-3546 Create 'save and add' button to add forms (#2100)
15. ENCD-3700 Remove unreplicated exp audit for genetic mod DNase (#2096)
16. ENCD-3781 Resolve WGBS lambda audit error (#2095)
17. ENCD 3759 Fix WGBS coverage audit (#2093)
18. ENCD-3743 Fix read depth audits for DNase and ChIP (#2091)
19. ENCD-3760 Remove the NTR assay audit (#2089)
20. ENCD-3724 Adjust facet term display check (#2086)
21. ENCD-3755 Remove schemas for RNAi and construct characterizations (#2085)
22. ENCD-3737 Add M14 gencode annotations to file enums (#2084)
23. ENCD-3708 Update publication states (#2077)
24. ENCD-3699 Remove mixed run type audit from DNase (#2065)
25. ENCD-3661 Update drawing file graphs and JS Tests (#2080)
26. ENCD-3764 Fix message typo in Assay audit (#2081)
27. ENCD-3473 Fix for unknown error in batch_download
28. ENCD-3579 Fix for batch download error
29. ENCD-3566 Fix JS FileInput add document (#2076)
30. ENCD-3597 Use obj picker for user impersonation (#2068)
31. ENCD-3721 Allow 'in vitro sample' to have biosample_term_name (#2067)
32. ENCD-3734 file audit escalation (#2066)

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v65.1

25 Jan 21:17
@caseylitton caseylitton
v65.1
f9dd5bc
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v65.1 Pre-release
Pre-release 
1. ENCD-3813 Update to snovault 1.0.1 (#2116)
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v65.0 - ES5 Update

22 Jan 19:08
@caseylitton caseylitton
v65.0
f5761a7
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v65.0 - ES5 Update Pre-release
Pre-release 
1.  ENCD-3815 Fix tests for facet aggregation set to 200 (#2109)
2.  ENCD-3795 Fix spelling in histone and idr qm jsons (#2104)
3.  ENCD-3810 Set facet aggregation to 200 in search (#2107)
4.  ENCD-3749 Update README for ES5 and dependency requirements (#2087)
5.  ENCD-3741 Search for objects based on associated grant number (#2103)
6.  ENCD-3792 Add histone_chip_quality_metric PIP-198 (#2101)
7.  Update to snovault v1.0.0
8.  ENCD-3745 Add platform to file and exp facets (#2088)
9.  ENCD-3765 Set max_result_window for annotations index (#2083)
10. ENCD-2488 ES5 Update aka RM3910
11. ENCD-3546 Create 'save and add' button to add forms (#2100)
12. ENCD-3700 Remove unreplicated exp audit for genetic mod DNase (#2096)
13. ENCD-3781 Resolve WGBS lambda audit error (#2095)
14. ENCD 3759 Fix WGBS coverage audit (#2093)
15. ENCD-3743 Fix read depth audits for DNase and ChIP (#2091)
16. ENCD-3760 Remove the NTR assay audit (#2089)
17. ENCD-3724 Adjust facet term display check (#2086)
18. ENCD-3755 Remove schemas for RNAi and construct characterizations (#2085)
19. ENCD-3737 Add M14 gencode annotations to file enums (#2084)
20. ENCD-3708 Update publication states (#2077)
21. ENCD-3699 Remove mixed run type audit from DNase (#2065)
22. ENCD-3661 Update drawing file graphs and JS Tests (#2080)
23. ENCD-3764 Fix message typo in Assay audit (#2081)
24. ENCD-3473 Fix for unknown error in batch_download
25. ENCD-3579 Fix for batch download error
26. ENCD-3566 Fix JS FileInput add document (#2076)
27. ENCD-3597 Use obj picker for user impersonation (#2068)
28. ENCD-3721 Allow 'in vitro sample' to have biosample_term_name (#2067)
29. ENCD-3734 file audit escalation (#2066)
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v64.0

21 Dec 17:44
@caseylitton caseylitton
v64.0
d7aa9e2
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v64.0
  1. ENCD-3785 Add user to deploy auth keys (#2097)
  2. [hotfix] ENCD-3736 Fix pop error (#2099)
  3. ENCD-3656 Include ssh keys in deploy
  4. Fix pylint issues in deploy script
  5. ENCD-3710 Remove unused code from audits of Experiment (#2059)
  6. ENCD-3707-scrub-proposed-preliminary (#2054)
  7. ENCD-3740-duplicate-quality-metric-audit (#2058)
  8. ENCD-3722 Pre Install setuptools with pip for travis (#2056)
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v64rc4

19 Dec 01:36
@caseylitton caseylitton
v64rc4
f767ec5
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v64rc4

v64rc4

  • ENCD-3656 Include ssh keys in deploy
  • Fix pylint issues in deploy script
  • ENCD-3710 Remove unused code from audits of Experiment
  • ENCD-3707-scrub-proposed-preliminary
  • ENCD-3740-duplicate-quality-metric-audit
  • ENCD-3722 Pre Install setuptools with pip for travis
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v64rc3-deprecated

07 Dec 23:16
@caseylitton caseylitton
v64rc3
0c395f6
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v64rc3-deprecated Pre-release
Pre-release

v64rc3-deprecated
-ES5 was pushed out v66 due to bugs. v64rc3 will be replace with v64rc4.

v64rc3
-SNOVAULT Update: ENCD-3750 Update snovault release to v0.33
-ES5 Update: ENCD-2488 ES5 Update aka RM3910
-Fixing Travis Deploy: ENCD-3722 Pre Install setuptools with pip for travis

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