Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

SS-185: hERG Cardiotoxicity Molecules #316

Open
Sulstice opened this issue Jul 15, 2024 · 5 comments
Open

SS-185: hERG Cardiotoxicity Molecules #316

Sulstice opened this issue Jul 15, 2024 · 5 comments
Assignees
Labels

Comments

@Sulstice
Copy link
Collaborator

Sulstice commented Jul 15, 2024

In this article, hERG molecules from their model from Table 5 should be recorded. The top 10 candidates.

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2814-5#article-info

@Sulstice Sulstice self-assigned this Jul 15, 2024
@Sulstice Sulstice changed the title SS-185: Cardiotoxicity Molecules SS-185: hERG Cardiotoxicity Molecules Jul 15, 2024
@Sulstice Sulstice moved this from Todo to In Progress in Research & Development Sep 13, 2024
@Sulstice Sulstice added the 2.0 label Sep 13, 2024
@Sulstice
Copy link
Collaborator Author

@ANUGAMAGE Assign this one to someone who is junior and review their PR. Add me on the PR. Gear this up for 2.0

@ANUGAMAGE
Copy link
Collaborator

@sakeermr Go through above link and add top 10 candidates.

@sakeermr
Copy link
Collaborator

sakeermr commented Oct 30, 2024

Research papers shows

A. Both in vivo and prediction computer models shows as toxic

  1. Haloperidol 'C1CN(CCC1(C2=CC=C(C=C2)Cl)O)CCCC(=O)C3=CC=C(C=C3)F'

  2. Quinnidine 'COC1=CC2=C(C=CN=C2C=C1)C@@HO'

  3. Disopyramide. 'CC(C)N(CCC(C1=CC=CC=C1)(C2=CC=CC=N2)C(=O)N)C(C)C'

  4. Chloropromazine. 'CN(C)CCCN1C2=CC=CC=C2SC3=C1C=C(C=C3)Cl'

B. In vivo result is non toxic but prediction computer models shows as toxic

  1. Loratadine
    'CCOC(=O)N1CCC(=C2C3=C(CCC4=C2N=CC=C4)C=C(C=C3)Cl)CC1'

  2. Cimetidine 'CC1=C(N=CN1)CSCCNC(=NC)NC#N'

  3. Terazosin 'COC1=C(C=C2C(=C1)C(=NC(=N2)N3CCN(CC3)C(=O)C4CCCO4)N)OC'

  4. Spironolactone 'CC(=O)S[C@@h]1CC2=CC(=O)CC[C@@]2([C@@h]3[C@@h]1[C@@h]4CC[C@]5([C@]4(CC3)C)CCC(=O)O5)C'

  5. Cefazoline 'CC1=NN=C(S1)SCC2=C(N3C@@HSC2)C(=O)O'

C. In vivo shows as toxic but in prediction computer model shows as non toxic

  1. Sotalol
    ' CC(C)NCC(C1=CC=C(C=C1)NS(=O)(=O)C)O'

@ANUGAMAGE
Copy link
Collaborator

@sakeermr things that approved in vivo are more accurate than in silico. But I think we should record all 10 of them because Sul wanted to record. Send a pr we will figure things out

@sakeermr
Copy link
Collaborator

Ha ok i will send

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
Status: In Progress
Development

No branches or pull requests

3 participants