Added strand to output in create_paths/v2

JLTrincado · JLTrincado · commit 1850e6176cd9 · 2017-12-06T16:24:38.000-05:00
diff --git a/create_paths.py b/create_paths.py
@@ -215,7 +215,7 @@ def main():
         # Save all the combinations of the exons in a separate file
         outFile2 = open(output_path+".paths", 'w')
         for element in paths_list:
-            header_id = ">Transcript_"+str(i)
+            header_id = ">Transcript_"+str(i) + ":" + strand
             outFile2.write(header_id+": "+str(element) + "\n")
             full_seq = ""
             for x in element:
diff --git a/create_paths_v2.py b/create_paths_v2.py
@@ -214,7 +214,7 @@ def main():
         # Save all the combinations of the exons in a separate file
         outFile2 = open(output_path+".paths", 'w')
         for element in paths_list:
-            header_id = ">Transcript_"+str(i)
+            header_id = ">Transcript_"+str(i) + ":" + strand
             outFile2.write(header_id+": "+str(element) + "\n")
             full_seq = ""
             for x in element:
