diff --git a/documentation/dataset_format.md b/documentation/dataset_format.md index cd8433aed..5011c1ac5 100644 --- a/documentation/dataset_format.md +++ b/documentation/dataset_format.md @@ -169,18 +169,18 @@ fields since version 1! Here is what the dataset.json should look like at the example of the Dataset005_Prostate from the MSD: { - "channel_names": { # formerly modalities - "0": "T2", + "channel_names": { + "0": "T2", "1": "ADC" - }, - "labels": { # THIS IS DIFFERENT NOW! + }, + "labels": { "background": 0, "PZ": 1, "TZ": 2 - }, - "numTraining": 32, - "file_ending": ".nii.gz" - "overwrite_image_reader_writer": "SimpleITKIO" # optional! If not provided nnU-Net will automatically determine the ReaderWriter + }, + "numTraining": 32, + "file_ending": ".nii.gz", + "overwrite_image_reader_writer": "SimpleITKIO" } The channel_names determine the normalization used by nnU-Net. If a channel is marked as 'CT', then a global