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Create bioconda-install.yml
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name: Bioconda install
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on:
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schedule:
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- cron: '0 3 * * 1'
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jobs:
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install-linux:
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runs-on: ubuntu-latest
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strategy:
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max-parallel: 5
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: 3.9
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- name: Add conda to system path
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run: |
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# $CONDA is an environment variable pointing to the root of the miniconda directory
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echo $CONDA/bin >> $GITHUB_PATH
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- name: Install dependencies
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run: |
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conda install -c bioconda biophi
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- name: Run tests
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run: |
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biophi sapiens -h
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biophi oasis -h

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