From e67e1c5fe612d2d127e4132ae5043a2474cebbf9 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 3 Apr 2023 21:58:45 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/psf/black: 22.12.0 → 23.3.0](https://github.com/psf/black/compare/22.12.0...23.3.0)
- [github.com/pre-commit/mirrors-prettier: v3.0.0-alpha.4 → v3.0.0-alpha.6](https://github.com/pre-commit/mirrors-prettier/compare/v3.0.0-alpha.4...v3.0.0-alpha.6)
- https://github.com/myint/autoflake → https://github.com/PyCQA/autoflake
- [github.com/PyCQA/autoflake: v2.0.0 → v2.0.2](https://github.com/PyCQA/autoflake/compare/v2.0.0...v2.0.2)
---
 .pre-commit-config.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 1320e7f..1b76182 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,11 +7,11 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
     - repo: https://github.com/psf/black
-      rev: 22.12.0
+      rev: 23.3.0
       hooks:
           - id: black
     - repo: https://github.com/pre-commit/mirrors-prettier
-      rev: v3.0.0-alpha.4
+      rev: v3.0.0-alpha.6
       hooks:
           - id: prettier
     - repo: https://github.com/asottile/blacken-docs
@@ -43,8 +43,8 @@ repos:
             args: [--fix=lf]
           - id: trailing-whitespace
           - id: check-case-conflict
-    - repo: https://github.com/myint/autoflake
-      rev: v2.0.0
+    - repo: https://github.com/PyCQA/autoflake
+      rev: v2.0.2
       hooks:
           - id: autoflake
             args:

From b10f041fd9df3f543a3f88bbb32eea3ddc16b2f0 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 3 Apr 2023 21:59:09 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 sobolev_alignment/scvi_model_search.py | 8 ++------
 sobolev_alignment/sobolev_alignment.py | 2 --
 tests/test_krr_approx.py               | 2 --
 3 files changed, 2 insertions(+), 10 deletions(-)

diff --git a/sobolev_alignment/scvi_model_search.py b/sobolev_alignment/scvi_model_search.py
index 007472b..d0ea227 100644
--- a/sobolev_alignment/scvi_model_search.py
+++ b/sobolev_alignment/scvi_model_search.py
@@ -194,10 +194,6 @@ def _objective_function(params):
 def split_dataset(data_an, test_size=0.1):
     """Split between training and testing"""
     train_data_df, test_data_df = train_test_split(data_an.to_df(), test_size=test_size)
-    train_data_an = data_an[
-        train_data_df.index,
-    ]
-    test_data_an = data_an[
-        test_data_df.index,
-    ]
+    train_data_an = data_an[train_data_df.index,]
+    test_data_an = data_an[test_data_df.index,]
     return train_data_an, test_data_an
diff --git a/sobolev_alignment/sobolev_alignment.py b/sobolev_alignment/sobolev_alignment.py
index e103174..85e01f3 100644
--- a/sobolev_alignment/sobolev_alignment.py
+++ b/sobolev_alignment/sobolev_alignment.py
@@ -329,7 +329,6 @@ def _train_krr(
         frob_norm_source: bool = False,
         lib_size_norm: bool = False,
     ):
-
         if n_krr_clfs == 1:
             self.approximate_krr_regressions_[data_source] = self._train_one_krr(
                 data_source=data_source,
@@ -702,7 +701,6 @@ def _memmap_log_processing(
         unit_std: bool = False,
         frob_norm_source: bool = False,
     ):
-
         # Save embedding
         if save_mmap is not None and type(save_mmap) == str:
             self._save_mmap = save_mmap
diff --git a/tests/test_krr_approx.py b/tests/test_krr_approx.py
index b499b9c..881c2e3 100644
--- a/tests/test_krr_approx.py
+++ b/tests/test_krr_approx.py
@@ -176,7 +176,6 @@ def test_laplacian_falkon_fit(self, fit_falkon_laplacian_ridge, valid_input, val
         assert pearson_corr[0] > pearson_threshold
 
     def test_ridge_coef_sklearn_fit(self, fit_sklearn_laplacian_ridge, input, valid_input):
-
         pred_reconstruct = fit_sklearn_laplacian_ridge.kernel_(
             valid_input, input[fit_sklearn_laplacian_ridge.ridge_samples_idx_, :]
         )
@@ -186,7 +185,6 @@ def test_ridge_coef_sklearn_fit(self, fit_sklearn_laplacian_ridge, input, valid_
         )
 
     def test_ridge_coef_falkon_fit(self, fit_falkon_laplacian_ridge, input, valid_input):
-
         pred_reconstruct = fit_falkon_laplacian_ridge.kernel_(valid_input, fit_falkon_laplacian_ridge.anchors())
         pred_reconstruct = pred_reconstruct.matmul(fit_falkon_laplacian_ridge.sample_weights_)
         np.testing.assert_array_almost_equal(