DESCRIPTION

Package: SpatialOmicsOverlay
Title: Spatial Overlay for Omic Data from Nanostring GeoMx Data
Description: Tools for NanoString Technologies GeoMx Technology. Package to 
              easily graph on top of an OME-TIFF image. Plotting annotations 
              can range from tissue segment to gene expression.
Version: 1.3.2
Encoding: UTF-8
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre","aut")),
             person("Megan", "Vandenberg", email = "mvandenberg@nanostring.com", role = c("ctb")),
             person("Stephanie", "Zimmerman", role = c("ctb")))
Depends: R (>= 4.1.0)
Imports: S4Vectors, Biobase, base64enc, EBImage, ggplot2, XML, 
         scattermore, dplyr, pbapply, data.table, readxl, magick, grDevices, 
         stringr, plotrix, GeomxTools, BiocFileCache, stats, utils, methods,
         ggtext, tools, RBioFormats
Suggests: 
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    stringi,
    qpdf,
    pheatmap,
    viridis,
    cowplot,
    vdiffr,
    sf
License: MIT
Collate: addImage.R
         addPlottingFactor.R
         coordinateGeneration.R
         imageManipulation.R
         omeExtraction.R
         plottingBasics.R
         readSpatialOverlay.R
         removeSamples.R
         SpatialPosition-class.R
         SpatialOverlay-class.R
         utils.R
         xmlParsing.R
biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport, 
           Transcriptomics, Proteomics, ProprietaryPlatforms, RNASeq, Spatial,
           DataRepresentation, Visualization
VignetteEngine: knitr::rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3