Fix error in "update extension list" workflow (#665)

* Update update_extension_list.yml

* Update nwbInstallExtension function template

* whitespace

Author: ehennestad

.github/workflows/update_extension_list.yml

@@ -15,16 +15,16 @@ jobs:
   update_extension_list:
     runs-on: ubuntu-latest
     steps:
+      - name: Install MATLAB
+        uses: matlab-actions/setup-matlab@v2
+      
       # Use deploy key to push back to protected branch
       - name: Checkout repository using deploy key
         uses: actions/checkout@v4
         with:
           ref: refs/heads/main
           ssh-key: ${{ secrets.DEPLOY_KEY }}
 
-      - name: Install MATLAB
-        uses: matlab-actions/setup-matlab@v2
-      
       - name: Update extension list in nwbInstallExtensions
         uses: matlab-actions/run-command@v2
         with:
@@ -37,7 +37,6 @@ jobs:
           set -e  # Exit script on error
           git config user.name "${{ github.workflow }} by ${{ github.actor }}"
           git config user.email "<>"
-          git pull --rebase  # Ensure the branch is up-to-date
 
           if [[ -n $(git status --porcelain nwbInstallExtension.m) ]]; then
             git add nwbInstallExtension.m
@@ -46,4 +45,4 @@ jobs:
           else
             echo "Nothing to commit"
           fi
-        
+        

resources/function_templates/nwbInstallExtension.txt

@@ -1,18 +1,19 @@
 function nwbInstallExtension(extensionNames, options)
-% nwbInstallExtension - Installs a specified NWB extension.
+% NWBINSTALLEXTENSION - Installs a specified NWB extension.
 %
-% Usage:
-%   nwbInstallExtension(extensionNames) installs Neurodata Without Borders 
-%   (NWB) extensions to extend the functionality of the core NWB schemas. 
-%   extensionNames is a scalar string or a string array, containing the name
-%   of one or more extensions from the Neurodata Extensions Catalog
+% Syntax:
+%  NWBINSTALLEXTENSION(extensionNames) installs Neurodata Without Borders 
+%  (NWB) extensions to extend the functionality of the core NWB schemas. 
+%  extensionNames is a scalar string or a string array, containing the name
+%  of one or more extensions from the Neurodata Extensions Catalog
 %
 % Valid Extension Names (from https://nwb-extensions.github.io):
 {{extensionNamesDoc}}
 %
-% Example:
-%   % Install the "ndx-miniscope" extension
-%   nwbInstallExtension("ndx-miniscope")
+% Usage: 
+%  Example 1 - Install "ndx-miniscope" extension::
+%
+%    nwbInstallExtension("ndx-miniscope")
 %
 % See also:
 %   matnwb.extension.listExtensions, matnwb.extension.installExtension
@@ -27,7 +28,8 @@ function nwbInstallExtension(extensionNames, options)
     if isempty(extensionNames)
         T = matnwb.extension.listExtensions();
         extensionList = join( compose("  %s", [T.name]), newline );
-        error("Please specify the name of an extension. Available extensions:\n\n%s\n", extensionList)
+        error('NWB:InstallExtension:MissingArgument', ...
+            'Please specify the name of an extension. Available extensions:\n\n%s\n', extensionList)
     else
         for extensionName = extensionNames
             matnwb.extension.installExtension(extensionName, 'savedir', options.savedir)

tools/maintenance/matnwb_createNwbInstallExtension.m

@@ -18,12 +18,11 @@ function matnwb_createNwbInstallExtension()
     extensionNamesStr = compose("%s""%s""", indentStr, extensionNames);
     extensionNamesStr = strjoin(extensionNamesStr, ", ..." + newline);
     fcnStr = replace(fcnTemplate, "{{extensionNames}}", extensionNamesStr);
-        
+
     extensionNamesStr = compose("%%  - ""%s""", extensionNames);
     extensionNamesStr = strjoin(extensionNamesStr, newline);
     fcnStr = replace(fcnStr, "{{extensionNamesDoc}}", extensionNamesStr);
 
-
     fid = fopen(fullfile(matnwbRootDir, 'nwbInstallExtension.m'), "wt");
     fwrite(fid, fcnStr);
     fclose(fid);