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agent.py
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import os
import math
import random
import torch
import torch.nn as nn
import torch.nn.functional as F
import numpy as np
import networkx as nx
from sklearn.metrics import accuracy_score
from utils import *
from dataset import get_eigh
import matplotlib.pyplot as plt
from model.sgc import SGC
from model.gcn import GCN
from model.appnp import APPNP
from model.chebnet import ChebNet
from model.chebnetII import ChebNetII
from model.bernnet import BernNet
from model.gprgnn import GPRGNN
from model.gat import GAT
from mine.models.mine import Mine
class GraphAgent:
def __init__(self, args, data):
self.args = args
self.data = data
self.n_syn = int(len(data.idx_train) * args.reduction_rate)
self.n_middle = int(self.n_syn*0.5)
self.d = (data.x_train).shape[1]
self.num_classes = data.num_classes
self.syn_class_indices = {}
self.syn_class_indices_middle = {}
self.class_dict = None
self.x_middle = nn.Parameter(torch.FloatTensor(int(self.n_syn*0.5), self.d).cuda())
self.x_syn = nn.Parameter(torch.FloatTensor(self.n_syn, self.d).cuda())
self.eigenvecs_syn = nn.Parameter(
torch.FloatTensor(self.n_syn, args.eigen_k).cuda()
)
self.eigenvecs_syn_middle = nn.Parameter(
torch.FloatTensor(int(self.n_syn*0.5), int(args.eigen_k*0.5)).cuda()
)
y_full = data.y_full
idx_train = data.idx_train
self.y_syn = torch.LongTensor(self.generate_labels_syn(y_full[idx_train], args.reduction_rate)).cuda()
self.train_label=y_full[idx_train]
self.y_middle = torch.LongTensor(self.generate_labels_middle(y_full[idx_train], args.reduction_rate*0.5)).cuda()
init_syn_feat = self.get_init_syn_feat(dataset=args.dataset, reduction_rate=args.reduction_rate,
expID=args.expID)
init_syn_eigenvecs = self.get_init_syn_eigenvecs(self.n_syn, self.num_classes)
init_syn_eigenvecs = init_syn_eigenvecs[:, :args.eigen_k]
print(args.reduction_rate)
print(init_syn_feat.shape)
print(init_syn_eigenvecs.shape)
self.reset_parameters(init_syn_feat, init_syn_eigenvecs)
def reset_parameters(self, init_syn_feat, init_syn_eigenvecs):
self.x_syn.data.copy_(init_syn_feat)
self.eigenvecs_syn.data.copy_(init_syn_eigenvecs)
def get_sub_adj_feat(self, features):
data = self.data
args = self.args
idx_selected = []
from collections import Counter;
counter = Counter(self.y_syn.cpu().numpy())
for c in range(data.num_classes):
tmp = self.retrieve_class(c, num=counter[c])
tmp = list(tmp)
idx_selected = idx_selected + tmp
idx_selected = np.array(idx_selected).reshape(-1)
features = features[self.data.idx_train][idx_selected]
return features
def retrieve_class(self, c, num=256):
y_train = self.data.y_train.cpu().numpy()
if self.class_dict is None:
self.class_dict = {}
for i in range(self.data.num_classes):
self.class_dict['class_%s' % i] = (y_train == i)
idx = np.arange(len(self.data.idx_train))
idx = idx[self.class_dict['class_%s' % c]]
return np.random.permutation(idx)[:num]
def train(self, eigenvals_syn, co_x_trans_real, embed_mean_real):
args = self.args
data = self.data
adj_full = data.adj_full
adj_full = normalize_adj_to_sparse_tensor(adj_full)
optimizer_feat = torch.optim.Adam(
[self.x_syn], lr=args.lr_feat
)
optimizer_eigenvec = torch.optim.Adam(
[self.eigenvecs_syn], lr=args.lr_eigenvec
)
for ep in range(args.epoch):
loss = 0.0
x_syn = self.x_syn
eigenvecs_syn = self.eigenvecs_syn
# eigenbasis match
co_x_trans_syn = get_subspace_covariance_matrix(eigenvecs=eigenvecs_syn, x=x_syn) # kdd
eigen_match_loss = F.mse_loss(co_x_trans_syn, co_x_trans_real)
loss += args.alpha * eigen_match_loss
# class loss
embed_sum_syn = get_embed_sum(eigenvals=eigenvals_syn, eigenvecs=eigenvecs_syn, x=x_syn)
embed_mean_syn = get_embed_mean(embed_sum=embed_sum_syn, label=self.y_syn) # cd
cov_embed = embed_mean_real @ embed_mean_syn.T
iden = torch.eye(data.num_classes).cuda()
class_loss = F.mse_loss(cov_embed, iden)
loss += args.beta * class_loss
# orthog_norm
orthog_syn = eigenvecs_syn.T @ eigenvecs_syn
iden = torch.eye(args.eigen_k).cuda()
orthog_norm = F.mse_loss(orthog_syn, iden)
loss += args.gamma * orthog_norm
if (ep == 0) or (ep == (args.epoch - 1)):
print(f"epoch: {ep}")
print(f"eigen_match_loss: {eigen_match_loss}")
print(f"args.alpha * eigen_match_loss: {args.alpha * eigen_match_loss}")
print(f"class_loss: {class_loss}")
print(f"args.beta * class_loss: {args.beta * class_loss}")
print(f"orthog_norm: {orthog_norm}")
print(f"args.gamma * orthog_norm: {args.gamma * orthog_norm}")
optimizer_eigenvec.zero_grad()
optimizer_feat.zero_grad()
loss.backward()
# update U:
if ep % (args.e1 + args.e2) < args.e1:
optimizer_eigenvec.step()
else:
optimizer_feat.step()
x_syn, y_syn = self.x_syn.detach(), self.y_syn
eigenvecs_syn = self.eigenvecs_syn.detach()
acc = self.test_with_val(
x_syn,
eigenvals_syn,
eigenvecs_syn,
y_syn,
verbose=False
)
dir = f"./saved_ours/{args.dataset}-{args.reduction_rate}"
if not os.path.isdir(dir):
os.makedirs(dir)
torch.save(
eigenvals_syn,
f"{dir}/eigenvals_syn_{args.expID}.pt",
)
torch.save(
eigenvecs_syn,
f"{dir}/eigenvecs_syn_{args.expID}.pt",
)
torch.save(
x_syn, f"{dir}/feat_{args.expID}.pt"
)
return acc
def train_middle(self, eigenvals_syn, co_x_trans_real, embed_mean_real):
args = self.args
data = self.data
adj_full = data.adj_full
adj_full = normalize_adj_to_sparse_tensor(adj_full)
optimizer_feat = torch.optim.Adam(
[self.x_syn], lr=args.lr_feat
)
optimizer_eigenvec = torch.optim.Adam(
[self.eigenvecs_syn], lr=args.lr_eigenvec
)
for ep in range(args.epoch):
loss = 0.0
x_syn = self.x_syn
eigenvecs_syn = self.eigenvecs_syn
# eigenbasis match
co_x_trans_syn = get_subspace_covariance_matrix(eigenvecs=eigenvecs_syn, x=x_syn) # kdd
eigen_match_loss = F.mse_loss(co_x_trans_syn, co_x_trans_real)
loss += args.alpha * eigen_match_loss
# class loss
embed_sum_syn = get_embed_sum(eigenvals=eigenvals_syn, eigenvecs=eigenvecs_syn, x=x_syn)
embed_mean_syn = get_embed_mean(embed_sum=embed_sum_syn, label=self.y_syn) # cd
cov_embed = embed_mean_real @ embed_mean_syn.T
iden = torch.eye(data.num_classes).cuda()
class_loss = F.mse_loss(cov_embed, iden)
loss += args.beta * class_loss
# orthog_norm
orthog_syn = eigenvecs_syn.T @ eigenvecs_syn
iden = torch.eye(args.eigen_k).cuda()
orthog_norm = F.mse_loss(orthog_syn, iden)
loss += args.gamma * orthog_norm
if (ep == 0) or (ep == (args.epoch - 1)):
print(f"epoch: {ep}")
print(f"eigen_match_loss: {eigen_match_loss}")
print(f"args.alpha * eigen_match_loss: {args.alpha * eigen_match_loss}")
print(f"class_loss: {class_loss}")
print(f"args.beta * class_loss: {args.beta * class_loss}")
print(f"orthog_norm: {orthog_norm}")
print(f"args.gamma * orthog_norm: {args.gamma * orthog_norm}")
optimizer_eigenvec.zero_grad()
optimizer_feat.zero_grad()
loss.backward()
# update U:
if ep % (args.e1 + args.e2) < args.e1:
optimizer_eigenvec.step()
else:
optimizer_feat.step()
x_syn, y_syn = self.x_syn.detach(), self.y_syn
eigenvecs_syn = self.eigenvecs_syn.detach()
rat_list=[1.0]
for rat in rat_list:
acc = self.test_with_val(
x_syn,
eigenvals_syn,
eigenvecs_syn,
y_syn,
verbose=False,
ipc=rat
)
args.reduction_rate=args.reduction_rate*2
dir = f"./saved_ours/{args.dataset}-{args.reduction_rate}"
if not os.path.isdir(dir):
os.makedirs(dir)
torch.save(
eigenvals_syn,
f"{dir}/eigenvals_syn_middle.pt",
)
torch.save(
eigenvecs_syn,
f"{dir}/eigenvecs_syn_middle.pt",
)
torch.save(
x_syn, f"{dir}/feat_middle.pt"
)
return acc
def transfer(self,x_middle):
for c in range(len(self.syn_class_indices)):
[start, end] = self.syn_class_indices[c]
[start_middle, end_middle] = self.syn_class_indices_middle[c]
length = end_middle - start_middle
self.x_syn.data[start:start + length, :] = x_middle[start_middle:end_middle, :]
def mask_calculate(self,stop_mask):
for c, (start_middle, end_middle) in self.syn_class_indices_middle.items():
length = end_middle - start_middle
random_values = torch.bernoulli(torch.full((length, 1), 0.5))
if not torch.any(random_values == 1):
random_index = torch.randint(0, length, (1,))
random_values[random_index] = 1
stop_mask[start_middle:end_middle, :] = random_values
return stop_mask
def mask_calculate_top(self,stop_mask):
for c, (start, end) in self.syn_class_indices.items():
length = end - start
(start_middle,end_middle)=self.syn_class_indices_middle[c]
len2=end_middle-start_middle
random_values = torch.bernoulli(torch.full((length, 1), 0.5))
random_values[0:len2,:] = torch.ones(len2,1)
if not torch.any(random_values == 1):
random_index = torch.randint(0, length, (1,))
random_values[random_index] = 1
random_values=random_values.to('cuda')
stop_mask[start:end, :] = random_values
return stop_mask
def mask_increase(self, stop_mask):
for c, (start, end) in self.syn_class_indices.items():
length = end - start
random_values = torch.bernoulli(torch.full((length, 1), 0.5)).int()
value2 = stop_mask[start:end,:].int()
random_values = random_values.to('cuda')
value2 = value2.to('cuda')
random_values = torch.logical_or(random_values,value2).float()
if not torch.any(random_values == 1):
random_index = torch.randint(0, length, (1,))
random_values[random_index] = 1
stop_mask[start:end, :] = random_values
return stop_mask
def mask_decrease(self, stop_mask):
for c, (start_middle, end_middle) in self.syn_class_indices_middle.items():
length = end_middle - start_middle
random_values = torch.bernoulli(torch.full((length, 1), 0.5))
value2 = stop_mask[start_middle:end_middle,:]
random_values = random_values.to('cuda')
random_values = random_values * value2
if not torch.any(random_values == 1):
random_index = torch.randint(0, length, (1,))
random_values[random_index] = 1
stop_mask[start_middle:end_middle, :] = random_values
return stop_mask
def train_bottom(self, eigenvals_syn, co_x_trans_real, embed_mean_real):
args = self.args
data = self.data
adj_full = data.adj_full
adj_full = normalize_adj_to_sparse_tensor(adj_full)
dir = f"./saved_ours/{args.dataset}-{args.reduction_rate}"
self.x_middle.data=torch.load(f"{dir}/feat_middle.pt")
self.eigenvecs_syn_middle.data=torch.load(f"{dir}/eigenvecs_syn_middle.pt")
#
# self.x_syn.data= self.transfer(x_middle)
# self.eigenvecs_syn=self.transfer(eigenvecs_syn_middle)
(n,d)=self.x_middle.shape
optimizer_feat = torch.optim.Adam(
[self.x_middle], lr=args.lr_feat
)
optimizer_eigenvec = torch.optim.Adam(
[self.eigenvecs_syn_middle], lr=args.lr_eigenvec
)
stop_mask = torch.zeros(n, 1)
stop_mask = self.mask_calculate(stop_mask)
continue_mask = torch.ones(n,1)
continue_mask = continue_mask-stop_mask
stop_mask = stop_mask.to('cuda')
continue_mask = continue_mask.to('cuda')
zero_number=0.0
mine = Mine(self.d)
for ep in range(args.epoch_bottom):
loss = 0.0
x_syn = self.x_middle
eigenvecs_syn = self.eigenvecs_syn_middle
# eigenbasis match
co_x_trans_syn = get_subspace_covariance_matrix(eigenvecs=eigenvecs_syn, x=x_syn) # kdd
eigen_match_loss = F.mse_loss(co_x_trans_syn, co_x_trans_real)
loss += args.alpha * eigen_match_loss
# class loss
embed_sum_syn = get_embed_sum(eigenvals=eigenvals_syn, eigenvecs=eigenvecs_syn, x=x_syn)
embed_mean_syn = get_embed_mean(embed_sum=embed_sum_syn, label=self.y_middle) # cd
cov_embed = embed_mean_real @ embed_mean_syn.T
iden = torch.eye(data.num_classes).cuda()
class_loss = F.mse_loss(cov_embed, iden)
loss += args.beta * class_loss
# orthog_norm
orthog_syn = eigenvecs_syn.T @ eigenvecs_syn
iden = torch.eye(args.eigen_k_middle).cuda()
orthog_norm = F.mse_loss(orthog_syn, iden)
loss += args.gamma * orthog_norm
if zero_number<0.4 and self.args.use_mine:
x_selected = x_syn[stop_mask.squeeze() == 1]
y_selected = self.y_middle[stop_mask.squeeze() == 1]
mean_selected = self.compute_class_means(x_selected,y_selected)
mean_syn = self.compute_class_means(x_syn,self.y_middle)
ib_beta = 1e-30
mi = mine.optimize(mean_syn, mean_selected, iters = 20, batch_size=self.num_classes)
loss -= ib_beta*mi.detach()
print(mi)
if (ep == 0) or (ep == (args.epoch - 1)):
print(f"epoch: {ep}")
print(f"eigen_match_loss: {eigen_match_loss}")
print(f"args.alpha * eigen_match_loss: {args.alpha * eigen_match_loss}")
print(f"class_loss: {class_loss}")
print(f"args.beta * class_loss: {args.beta * class_loss}")
print(f"orthog_norm: {orthog_norm}")
print(f"args.gamma * orthog_norm: {args.gamma * orthog_norm}")
feat_origin=x_syn.data
feat_origin=feat_origin.to('cuda')
optimizer_eigenvec.zero_grad()
optimizer_feat.zero_grad()
loss.backward()
# update U:
# if ep % (args.e1 + args.e2) < args.e1:
# optimizer_eigenvec.step()
# else:
optimizer_feat.step()
self.x_middle.data = continue_mask * feat_origin+ stop_mask * x_syn.data
stop_mask = self.mask_decrease(stop_mask)
continue_mask = torch.ones(stop_mask.shape).to('cuda')-stop_mask
zero_number=int(torch.sum(stop_mask==0))
# print(f'zero ratio:{zero_number/n}')
x_syn, y_syn = self.x_middle.detach(), self.y_middle
eigenvecs_syn = self.eigenvecs_syn_middle.detach()
rat=[0.5,1.0]
for ipc in rat:
print(f'Randomly selected {ipc*0.5} rate from the largest condensed graph for testing')
# print(ipc)
acc = self.test_with_val_middle(
x_syn,
eigenvals_syn,
eigenvecs_syn,
y_syn,
verbose=False,
ipc=ipc
)
dir = f"./saved_ours/{args.dataset}-{args.reduction_rate}"
if not os.path.isdir(dir):
os.makedirs(dir)
torch.save(
eigenvals_syn,
f"{dir}/eigenvals_syn_bottom.pt",
)
torch.save(
eigenvecs_syn,
f"{dir}/eigenvecs_syn_bottom.pt",
)
torch.save(
x_syn, f"{dir}/feat_bottom.pt"
)
return acc
def train_top(self, eigenvals_syn, co_x_trans_real, embed_mean_real):
args = self.args
data = self.data
adj_full = data.adj_full
adj_full = normalize_adj_to_sparse_tensor(adj_full)
dir = f"./saved_ours/{args.dataset}-{args.reduction_rate}"
x_middle = torch.load(f"{dir}/feat_middle.pt")
# eigenvecs_syn_middle.data = torch.load(f"{dir}/eigenvecs_syn_middle.pt")
#
self.transfer(x_middle)
# self.eigenvecs_syn=self.transfer(eigenvecs_syn_middle)
optimizer_feat = torch.optim.Adam(
[self.x_syn], lr=args.lr_feat
)
optimizer_eigenvec = torch.optim.Adam(
[self.eigenvecs_syn], lr=args.lr_eigenvec
)
(n,d) = self.x_syn.shape
stop_mask = torch.zeros((n,1)).to('cuda')
stop_mask = self.mask_calculate_top(stop_mask)
continue_mask =torch.ones((n,1)).to('cuda')
continue_mask = continue_mask - stop_mask
zero_number = 1
mine = Mine(self.d)
for ep in range(args.epoch):
loss = 0.0
x_syn = self.x_syn
eigenvecs_syn = self.eigenvecs_syn
co_x_trans_syn = get_subspace_covariance_matrix(eigenvecs=eigenvecs_syn, x=x_syn) # kdd
eigen_match_loss = F.mse_loss(co_x_trans_syn, co_x_trans_real)
loss += args.alpha * eigen_match_loss
embed_sum_syn = get_embed_sum(eigenvals=eigenvals_syn, eigenvecs=eigenvecs_syn, x=x_syn)
embed_mean_syn = get_embed_mean(embed_sum=embed_sum_syn, label=self.y_syn) # cd
cov_embed = embed_mean_real @ embed_mean_syn.T
iden = torch.eye(data.num_classes).cuda()
class_loss = F.mse_loss(cov_embed, iden)
loss += args.beta * class_loss
orthog_syn = eigenvecs_syn.T @ eigenvecs_syn
iden = torch.eye(args.eigen_k).cuda()
orthog_norm = F.mse_loss(orthog_syn, iden)
loss += args.gamma * orthog_norm
if zero_number>0.3 and self.args.use_mine:
x_selected = x_syn[stop_mask.squeeze() == 1]
y_selected = self.y_syn[stop_mask.squeeze() == 1]
mean_selected = self.compute_class_means(x_selected,y_selected)
mean_syn = self.compute_class_means(x_syn,self.y_syn)
ib_beta = 1e-30
mi = mine.optimize(mean_syn, mean_selected, iters = 20, batch_size=self.num_classes)
loss -= ib_beta*mi.detach()
# print(mi)
if (ep == 0) or (ep == (args.epoch - 1)):
print(f"epoch: {ep}")
print(f"eigen_match_loss: {eigen_match_loss}")
print(f"args.alpha * eigen_match_loss: {args.alpha * eigen_match_loss}")
print(f"class_loss: {class_loss}")
print(f"args.beta * class_loss: {args.beta * class_loss}")
print(f"orthog_norm: {orthog_norm}")
print(f"args.gamma * orthog_norm: {args.gamma * orthog_norm}")
feat_origin = x_syn.data
feat_origin = feat_origin.to('cuda')
optimizer_eigenvec.zero_grad()
optimizer_feat.zero_grad()
loss.backward()
# update U:
if ep % (args.e1 + args.e2) < args.e1:
optimizer_eigenvec.step()
else:
optimizer_feat.step()
self.x_syn.data = continue_mask * feat_origin + stop_mask * x_syn.data
stop_mask = self.mask_increase(stop_mask)
continue_mask = torch.ones(stop_mask.shape).to('cuda') - stop_mask
zero_number = int(torch.sum(stop_mask == 0))
x_syn, y_syn = self.x_syn.detach(), self.y_syn
eigenvecs_syn = self.eigenvecs_syn.detach()
rat = [0.75,1.0]
for ipc in rat:
print(f'Randomly selected {ipc} rate from the largest condensed graph for testing')
acc = self.test_with_val(
x_syn,
eigenvals_syn,
eigenvecs_syn,
y_syn,
verbose=False,
ipc=ipc
)
dir = f"./saved_ours/{args.dataset}-{args.reduction_rate}"
if not os.path.isdir(dir):
os.makedirs(dir)
torch.save(
eigenvals_syn,
f"{dir}/eigenvals_syn_top.pt",
)
torch.save(
eigenvecs_syn,
f"{dir}/eigenvecs_syn_top.pt",
)
torch.save(
x_syn, f"{dir}/feat_top.pt"
)
return acc
def test_with_val(
self,
x_syn,
eigenvals_syn,
eigenvecs_syn,
y_syn,
verbose=False,
ipc=1.0
):
args = self.args
data = self.data
evaluate_gnn = args.evaluate_gnn
# 计算拉普拉斯矩阵并重新回到邻接矩阵
L_syn = eigenvecs_syn @ torch.diag(eigenvals_syn) @ eigenvecs_syn.T
if evaluate_gnn == "MLP":
adj_syn = torch.eye(self.n_syn).cuda()
else:
adj_syn = torch.eye(self.n_syn).cuda() - L_syn
# adj_syn = torch.eye(self.n_syn).cuda()
indices = []
from collections import Counter
counter = Counter(self.train_label.cpu().numpy())
for label in range(data.num_classes):
ind = self.syn_class_indices[label]
all = np.arange(ind[0], ind[1])
n_class = counter[label]
num = max(int(n_class * self.args.reduction_rate * ipc), 1)
# print(all)
selected = random.sample(list(all), num)
for x in selected:
indices.append(x)
x_syn = x_syn[indices]
y_syn = y_syn[indices]
adj_syn = adj_syn[indices, :][:, indices]
print(x_syn.shape, y_syn.shape, adj_syn.shape)
if evaluate_gnn == "SGC":
model = SGC(
num_features=self.d,
num_classes=data.num_classes,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
).cuda()
elif evaluate_gnn == "GCN":
model = GCN(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout
).cuda()
elif evaluate_gnn == "MLP":
model = GCN(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout
).cuda()
elif evaluate_gnn == "GAT":
model = GAT(
nfeat=self.d,
nclass=data.num_classes,
nhid=args.hidden_dim,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout,
device='cuda0'
).cuda()
elif evaluate_gnn == "ChebNet":
model = ChebNet(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
nlayers=args.nlayers,
k=args.k,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout,
).cuda()
elif evaluate_gnn == "APPNP":
model = APPNP(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout,
alpha=0.1,
).cuda()
elif evaluate_gnn == "ChebNetII":
model = ChebNetII(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
lr_conv=args.lr_conv,
weight_decay=args.wd_gnn,
wd_conv=args.wd_conv,
dropout=args.dropout,
dprate=args.dprate
).cuda()
elif evaluate_gnn == "BernNet":
model = BernNet(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
lr_conv=args.lr_conv,
weight_decay=args.wd_gnn,
wd_conv=args.wd_conv,
dropout=args.dropout,
dprate=args.dprate,
).cuda()
elif evaluate_gnn == "GPRGNN":
model = GPRGNN(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
lr_conv=args.lr_conv,
weight_decay=args.wd_gnn,
wd_conv=args.wd_conv,
dropout=args.dropout,
dprate=args.dprate,
).cuda()
model.cuda()
model.fit_with_val(
x_syn,
y_syn,
adj_syn,
data,
args.epoch_gnn,
verbose=verbose
)
model.eval()
# Full graph
idx_test = data.idx_test
x_full = data.x_full
y_full = data.y_full
adj_full = data.adj_full
adj_full = normalize_adj_to_sparse_tensor(adj_full)
y_test = (y_full[idx_test]).cpu().numpy()
output = model.predict(x_full, adj_full)
loss_test = F.nll_loss(output[idx_test], y_full[idx_test])
pred = output.max(1)[1].cpu().numpy()
acc_test = accuracy_score(y_test, pred[idx_test])
print(
f"(Test set results: loss= {loss_test.item():.4f}, accuracy= {acc_test:.4f}\n"
)
return acc_test
def test_with_val_middle(
self,
x_syn,
eigenvals_syn,
eigenvecs_syn,
y_syn,
verbose=False,
ipc=1.0
):
args = self.args
data = self.data
evaluate_gnn = args.evaluate_gnn
L_syn = eigenvecs_syn @ torch.diag(eigenvals_syn) @ eigenvecs_syn.T
if evaluate_gnn == "MLP":
adj_syn = torch.eye(self.n_middle).cuda()
else:
adj_syn = torch.eye(self.n_middle).cuda() - L_syn
#adj_syn = torch.eye(self.n_middle).cuda()
from collections import Counter
counter = Counter(self.train_label.cpu().numpy())
indices = []
for label in range(data.num_classes):
ind = self.syn_class_indices_middle[label]
all = np.arange(ind[0], ind[1])
n_class=counter[label]
num=max(int( n_class * self.args.reduction_rate * 0.5 * ipc ), 1)
# print(all)
selected = random.sample(list(all), num)
for x in selected:
indices.append(x)
x_syn = x_syn[indices]
y_syn = y_syn[indices]
adj_syn = adj_syn[indices, :][:, indices]
print(x_syn.shape, y_syn.shape, adj_syn.shape)
if evaluate_gnn == "SGC":
model = SGC(
num_features=self.d,
num_classes=data.num_classes,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
).cuda()
elif evaluate_gnn == "GCN":
model = GCN(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout
).cuda()
elif evaluate_gnn == "MLP":
model = GCN(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout
).cuda()
elif evaluate_gnn == "GAT":
model = GAT(
nfeat=self.d,
nclass=data.num_classes,
nhid=args.hidden_dim,
nlayers=args.nlayers,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout,
device='cuda0'
).cuda()
elif evaluate_gnn == "ChebNet":
model = ChebNet(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
nlayers=args.nlayers,
k=args.k,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout,
).cuda()
elif evaluate_gnn == "APPNP":
model = APPNP(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
weight_decay=args.wd_gnn,
dropout=args.dropout,
alpha=0.1,
).cuda()
elif evaluate_gnn == "ChebNetII":
model = ChebNetII(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
lr_conv=args.lr_conv,
weight_decay=args.wd_gnn,
wd_conv=args.wd_conv,
dropout=args.dropout,
dprate=args.dprate
).cuda()
elif evaluate_gnn == "BernNet":
model = BernNet(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
lr_conv=args.lr_conv,
weight_decay=args.wd_gnn,
wd_conv=args.wd_conv,
dropout=args.dropout,
dprate=args.dprate,
).cuda()
elif evaluate_gnn == "GPRGNN":
model = GPRGNN(
num_features=self.d,
num_classes=data.num_classes,
hidden_dim=args.hidden_dim,
k=args.k,
lr=args.lr_gnn,
lr_conv=args.lr_conv,
weight_decay=args.wd_gnn,
wd_conv=args.wd_conv,
dropout=args.dropout,
dprate=args.dprate,
).cuda()
model.cuda()
model.fit_with_val(
x_syn,
y_syn,
adj_syn,
data,
args.epoch_gnn,
verbose=verbose
)
model.eval()
# Full graph
idx_test = data.idx_test
x_full = data.x_full
y_full = data.y_full
adj_full = data.adj_full
adj_full = normalize_adj_to_sparse_tensor(adj_full)
y_test = (y_full[idx_test]).cpu().numpy()
output = model.predict(x_full, adj_full)
loss_test = F.nll_loss(output[idx_test], y_full[idx_test])
pred = output.max(1)[1].cpu().numpy()
acc_test = accuracy_score(y_test, pred[idx_test])
print(
f"(Test set results: loss= {loss_test.item():.4f}, accuracy= {acc_test:.4f}\n"
)
return acc_test
def get_eigenspace_embed(self, eigen_vecs, x):
eigen_vecs = eigen_vecs.unsqueeze(2) # k * n * 1
eigen_vecs_t = eigen_vecs.permute(0, 2, 1) # k * 1 * n
eigenspace = torch.bmm(eigen_vecs, eigen_vecs_t) # knn
embed = torch.matmul(eigenspace, x) # knn*nd=knd
return embed
def get_real_embed(self, k, L, x):
filtered_x = x
emb_list = []
for i in range(k):
filtered_x = L @ filtered_x
emb_list.append(filtered_x)
embed = torch.stack(emb_list, dim=0)
return embed
def get_syn_embed(self, k, eigenvals, eigen_vecs, x):
trans_x = eigen_vecs @ x
filtered_x = trans_x
emb_list = []
for i in range(k):
filtered_x = torch.diag(eigenvals) @ filtered_x
emb_list.append(eigen_vecs.T @ filtered_x)
embed = torch.stack(emb_list, dim=0)
return embed
def get_init_syn_feat(self, dataset, reduction_rate, expID):
init_syn_x = torch.load(f"./initial_feat/{dataset}/x_init_{reduction_rate}_{expID}.pt", map_location="cpu")
return init_syn_x
def get_init_syn_eigenvecs(self, n_syn, num_classes):
n_nodes_per_class = n_syn // num_classes
n_nodes_last = n_syn % num_classes
size = [n_nodes_per_class for i in range(num_classes - 1)] + (
[n_syn - (num_classes - 1) * n_nodes_per_class] if n_nodes_last != 0 else [n_nodes_per_class]
)
prob_same_community = 1 / num_classes
prob_diff_community = prob_same_community / 3
prob = [
[prob_diff_community for i in range(num_classes)]
for i in range(num_classes)
]
for idx in range(num_classes):
prob[idx][idx] = prob_same_community
syn_graph = nx.stochastic_block_model(size, prob)
syn_graph_adj = nx.adjacency_matrix(syn_graph)
syn_graph_L = normalize_adj(syn_graph_adj)
syn_graph_L = np.eye(n_syn) - syn_graph_L
_, eigen_vecs = get_eigh(syn_graph_L, "", False)
return torch.FloatTensor(eigen_vecs).cuda()
def generate_labels_syn(self, train_label, reduction_rate):
from collections import Counter
n = len(train_label)
counter = Counter(train_label.cpu().numpy())
num_class_dict = {}
sorted_counter = sorted(counter.items(), key=lambda x: x[1])
sum_ = 0
y_syn = []
self.syn_class_indices = {}
for ix, (c, num) in enumerate(sorted_counter):
if ix == len(sorted_counter) - 1:
num_class_dict[c] = int(n * reduction_rate) - sum_
self.syn_class_indices[c] = [len(y_syn), len(y_syn) + num_class_dict[c]]
y_syn += [c] * num_class_dict[c]
else:
num_class_dict[c] = max(int(num * reduction_rate), 1)
sum_ += num_class_dict[c]
self.syn_class_indices[c] = [len(y_syn), len(y_syn) + num_class_dict[c]]
y_syn += [c] * num_class_dict[c]
return y_syn
def generate_labels_middle(self, train_label, reduction_rate):
from collections import Counter
n = len(train_label)
counter = Counter(train_label.cpu().numpy())
num_class_dict = {}
sorted_counter = sorted(counter.items(), key=lambda x: x[1])
sum_ = 0
y_syn = []
self.syn_class_indices_middle = {}
for ix, (c, num) in enumerate(sorted_counter):
if ix == len(sorted_counter) - 1:
num_class_dict[c] = int(n * reduction_rate) - sum_
self.syn_class_indices_middle[c] = [len(y_syn), len(y_syn) + num_class_dict[c]]
y_syn += [c] * num_class_dict[c]
else:
num_class_dict[c] = max(int(num * reduction_rate), 1)
sum_ += num_class_dict[c]
self.syn_class_indices_middle[c] = [len(y_syn), len(y_syn) + num_class_dict[c]]
y_syn += [c] * num_class_dict[c]