Workflow

Example 1: The human/infection/SARS-CoV-2/scotland/mortality dataset

1. Run the upload script (to upload metadata to the data repository) located here: https://github.com/ScottishCovidResponse/SCRCdata/blob/master/inst/scripts/scotgov_deaths.R

2. Upload source data to the Boydorr server: /srv/ftp/scrc/human/infection/SARS-CoV-2/scotland/mortality/1.20200716.0.csv

3. Push processing function (to convert the *.csv file to an *.h5 file) to the SCRCdata repository, here: https://github.com/ScottishCovidResponse/SCRCdata/blob/master/R/process_scotgov_deaths.R

4. Upload the data product to the Boydorr server: /srv/ftp/scrc/human/infection/SARS-CoV-2/scotland/mortality/1.20200716.0.h5