charr_pcangsd

## Load python and launch virtual environment
module load python
source ~/python_env/bin/activate
cd /home/tkess/pcangsd

python pcangsd.py \
  -beagle /home/tkess/scratch/CharrGDL_WG/Charr_paledark_realign_norep_maf05.beagle.gz \
  -selection \
  -threads 20 \
  -admix \
  -o PC_charr_mq30_norepmaf05 \
  -sites_save

deactivate