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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.agaveplatform</groupId>
<artifactId>science-apis</artifactId>
<version>2.2.29</version>
<name>Agave Platform </name>
<description>Parent pom for all Agave services</description>
<packaging>pom</packaging>
<organization>
<name>Agave Platform</name>
<url>http://agaveplatform.org</url>
</organization>
<developers>
<developer>
<id>deardooley</id>
<name>Rion Dooleyy</name>
<email>deardooley@gmail.com</email>
<url>https://agaveplatform.org</url>
<organization>Chapman University</organization>
<organizationUrl>http://chapman.edu</organizationUrl>
<roles>
<role>developer</role>
</roles>
</developer>
<developer>
<id>ertanner</id>
<name>Eric Tanner</name>
<email>ertanner@gmail.com</email>
<organization>Chapman University</organization>
<organizationUrl>http://chapman.edu</organizationUrl>
<roles>
<role>developer</role>
</roles>
</developer>
<developer>
<id>karen.liang95</id>
<name>Karen Liang</name>
<email>karen.liang95@gmail.com</email>
<organization>Chapman University</organization>
<organizationUrl>http://chapman.edu</organizationUrl>
<roles>
<role>developer</role>
</roles>
</developer>
</developers>
<scm>
<connection>scm:git:https://github.com/agaveplatform/science-apis.git</connection>
<developerConnection>scm:git:ssh://git@github.com:agaveplatform/science-apis.git</developerConnection>
<url>https://github.com/agaveplatform/science-apis</url>
</scm>
<repositories>
<repository>
<id>agave-maven-public</id>
<name>Agave Maven public mirror</name>
<url>https://nexus.agaveplatform.org/repository/maven-public/</url>
</repository>
<repository>
<id>sonatype-nexus-releases</id>
<url>https://oss.sonatype.org/content/repositories/releases</url>
<releases>
<enabled>false</enabled>
<updatePolicy>never</updatePolicy>
</releases>
<snapshots>
<enabled>false</enabled>
<updatePolicy>never</updatePolicy>
</snapshots>
</repository>
<repository>
<id>sonatype-nexus-snapshots</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
<releases>
<enabled>false</enabled>
<updatePolicy>never</updatePolicy>
</releases>
<snapshots>
<enabled>false</enabled>
<updatePolicy>never</updatePolicy>
</snapshots>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>agave-maven-plugins</id>
<name>Agave Platform Maven Repository</name>
<url>https://nexus.agaveplatform.org/repository/maven-public</url>
<releases>
<enabled>true</enabled>
</releases>
</pluginRepository>
</pluginRepositories>
<properties>
<!-- This build's label -->
<foundation.service.version>${project.version}-r${buildNumber}</foundation.service.version>
<!-- Java version -->
<java-source.version>9</java-source.version>
<java-target.version>9</java-target.version>
<!-- required for jdk9 -->
<maven.compiler.source>1.9</maven.compiler.source>
<maven.compiler.target>1.9</maven.compiler.target>
<!-- Below are the version numbers for all software on which we explicitly depend. -->
<!-- If a library or plugin appears as a dependency in some pom file, then that -->
<!-- artifact's version number should be in the lists below for easy managment and -->
<!-- access. Version numbers are organized into 2 lists, one for plugins and the -->
<!-- other for library dependencies. -->
<!-- -->
<!-- Note that we specify the versions of the base maven plugins so that they -->
<!-- don't change from underneath us. This approach requires us to manually -->
<!-- upgrade the plugins we use; a reasonable upgrade cycle would be every 6-12 -->
<!-- months. See http://maven.apache.org/plugins/index.html for latest plugin -->
<!-- listing. Last upgrade occurred on 4/24/2017. -->
<!-- -->
<!-- PLEASE KEEP THESE LISTS ALPHABETIZED -->
<!-- PLUGIN Versions (in alphabetical order) -->
<await-maven-plugin.version>1.4</await-maven-plugin.version>
<buildnumber-maven-plugin.version>1.3</buildnumber-maven-plugin.version>
<directory-maven-plugin.version>0.1</directory-maven-plugin.version>
<docker-compose-maven-plugin.version>2.5.1</docker-compose-maven-plugin.version>
<dockerfile-maven-plugin.version>1.4.13</dockerfile-maven-plugin.version>
<duplicate-finder-maven-plugin.version>1.2.1</duplicate-finder-maven-plugin.version>
<exec-maven-plugin.version>1.6.0</exec-maven-plugin.version>
<flyway-maven-plugin.version>4.0</flyway-maven-plugin.version>
<flyway-maven-plugin.versionRange>[4.0,)</flyway-maven-plugin.versionRange>
<jaxb.version>2.2.11</jaxb.version>
<jacoco.version>0.8.1</jacoco.version>
<jgitflow-maven-plugin.version>1.0-m5.1</jgitflow-maven-plugin.version>
<maven-antrun-plugin.version>1.8</maven-antrun-plugin.version>
<maven-assembly-plugin.version>3.1.1</maven-assembly-plugin.version>
<maven-compiler-plugin.version>3.8.1</maven-compiler-plugin.version>
<maven-deploy-plugin.version>3.0.0-M1</maven-deploy-plugin.version>
<maven-install-plugin.version>2.5.2</maven-install-plugin.version>
<maven-jar-plugin.version>3.1.2</maven-jar-plugin.version>
<!-- <maven-jib-plugin.version>1.7.0</maven-jib-plugin.version>-->
<maven-shade-plugin.version>3.2.1</maven-shade-plugin.version>
<maven-site-plugin.version>3.8.2</maven-site-plugin.version>
<maven-surefire-plugin.version>3.0.0-M3</maven-surefire-plugin.version>
<maven-failsafe-plugin.version>3.0.0-M3</maven-failsafe-plugin.version>
<maven-war-plugin.version>3.2.3</maven-war-plugin.version>
<org.eclipse.m2e.lifecycle-mapping.version>1.0.0</org.eclipse.m2e.lifecycle-mapping.version>
<!-- LIBRARY Versions (in alphabetical order) -->
<amqp-client.version>3.1.4</amqp-client.version>
<ant.version>1.8.2</ant.version>
<BeanstalkClient.version>1.6.0</BeanstalkClient.version>
<commons-codec.version>1.7</commons-codec.version>
<commons-exec.version>1.1</commons-exec.version>
<commons-fileupload.version>1.2.2</commons-fileupload.version>
<commons-io.version>2.1</commons-io.version>
<commons-lang.version>2.5</commons-lang.version>
<commons-math3.version>3.5</commons-math3.version>
<commons-validator.version>1.4.0</commons-validator.version>
<el-api.version>2.2</el-api.version>
<flyway-core.version>6.0.7</flyway-core.version>
<gsissh.version>0.12.1</gsissh.version>
<gson.version>2.2.4</gson.version>
<guava.version>26.0-android</guava.version>
<guice.version>3.0</guice.version>
<hibernate-entitymanager.version>3.6.10.Final</hibernate-entitymanager.version>
<hibernate-validator-annotation-processor.version>5.0.1.Final</hibernate-validator-annotation-processor.version>
<hibernate-validator.version>4.1.0.Final</hibernate-validator.version>
<httpclient.version>4.5.10</httpclient.version>
<httpmime.version>4.3.1</httpmime.version>
<ironmq.version>3.0.2</ironmq.version>
<jackson-antpathfilter.version>1.0.1</jackson-antpathfilter.version>
<jackson.version>2.5.5</jackson.version>
<jargon-core.version>4.2.0.0-RELEASE</jargon-core.version>
<jasypt.version>1.9.0</jasypt.version>
<javax.el.version>2.2.4</javax.el.version>
<javax.ws.rs-api.version>2.0</javax.ws.rs-api.version>
<jboss-logging.version>3.1.3.GA</jboss-logging.version>
<jclouds.version>2.2.0</jclouds.version>
<jglobus.version>2.1.0</jglobus.version>
<bcprov.jdk15on>1.5.0</bcprov.jdk15on>
<joda-time.version>2.2</joda-time.version>
<json-path.version>2.2.0</json-path.version>
<json-schema-validator.version>2.0.1</json-schema-validator.version>
<json.version>20090211</json.version>
<junit.version>3.8.1</junit.version>
<log4j.version>1.2.17</log4j.version>
<mail.version>1.4.6</mail.version>
<maverick.version>1.6.3</maverick.version>
<mongo-java-driver.version>3.12.7</mongo-java-driver.version>
<!-- <mongo-java-driver.version>3.6.3</mongo-java-driver.version>-->
<!-- <mongojack.version>4.0.2</mongojack.version>-->
<!-- <mongojack.version>2.6.0</mongojack.version>-->
<mysql-connector-java.version>8.0.13</mysql-connector-java.version>
<mariadb-connector-java.version>2.4.0</mariadb-connector-java.version>
<nimbus-jose-jwt.version>2.20</nimbus-jose-jwt.version>
<pat.version>1.5.3</pat.version>
<plexus-archiver.version>3.0.1</plexus-archiver.version>
<plexus-log4j-logging.version>1.0</plexus-log4j-logging.version>
<plexus-utils.version>3.0.15</plexus-utils.version>
<powermock.version>1.7.4</powermock.version>
<quartz.version>2.1.7</quartz.version>
<reflections.version>0.9.9</reflections.version>
<restlet.version>2.3.4</restlet.version>
<sendgrid-java.version>4.4.8</sendgrid-java.version>
<servlet-api.version>2.4</servlet-api.version>
<simple-http.version>1.0-jdk6</simple-http.version>
<simple-jndi.version>0.11.4.1</simple-jndi.version>
<slf4j-api.version>1.6.1</slf4j-api.version>
<slf4j-log4j12.version>1.6.1</slf4j-log4j12.version>
<testng.version>6.9.12</testng.version>
<twilio-java-sdk.version>3.4.1</twilio-java-sdk.version>
<uuid.version>3.4.0</uuid.version>
<validator-collection.version>2.1.6</validator-collection.version>
<xstream.version>1.4.7</xstream.version>
<!-- LIBRARY Version special cases -->
<hibernate-validator.PROFILES.version>5.0.1.Final</hibernate-validator.PROFILES.version>
<!-- OTHER properties (in alphabetical order) -->
<await-maven-plugin.initialWait>5000</await-maven-plugin.initialWait>
<docker-compose-plugin.awaitDuration>10</docker-compose-plugin.awaitDuration>
<!-- <docker.image.repo>agaveplatform/</docker.image.repo>-->
<docker.image.repo></docker.image.repo>
<docker.image.tag>${buildNumber}</docker.image.tag>
<force.check.update>false</force.check.update>
<force.check.version>false</force.check.version>
<force.docker.environment>false</force.docker.environment>
<main.basedir>${project.basedir}</main.basedir>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.inceptionYear>2011</project.inceptionYear>
<skip.create-db>true</skip.create-db>
<skip.docker.build>true</skip.docker.build>
<skip.docker.clean>true</skip.docker.clean>
<skip.docker.push>true</skip.docker.push>
<skip.integration.tests>true</skip.integration.tests>
<skip.unit.tests>true</skip.unit.tests>
<skip.integration.s3.tests>true</skip.integration.s3.tests>
<skip.integration.irods3.tests>true</skip.integration.irods3.tests>
<skip.integration.irods4.tests>true</skip.integration.irods4.tests>
<skip.integration.sftp.tests>true</skip.integration.sftp.tests>
<skip.integration.sftprelay.tests>true</skip.integration.sftprelay.tests>
<skip.integration.http.tests>true</skip.integration.http.tests>
<skip.post-integration.pause>true</skip.post-integration.pause>
</properties>
<build>
<extensions>
<extension>
<groupId>kr.motd.maven</groupId>
<artifactId>os-maven-plugin</artifactId>
<version>1.6.2</version>
</extension>
</extensions>
<plugins>
<!-- This plugin can be used find duplicate classes on the classpath of each -->
<!-- subproject. Adding the "check" goal below runs this plugin. A better -->
<!-- approach is to run the following command from the top-level Agave -->
<!-- directory: mvn duplicate-finder:check. Run mvn duplicate-finder:help -->
<!-- for more information. -->
<!-- -->
<!-- Also see https://github.com/basepom/duplicate-finder-maven-plugin/wiki -->
<plugin>
<groupId>org.basepom.maven</groupId>
<artifactId>duplicate-finder-maven-plugin</artifactId>
<version>${duplicate-finder-maven-plugin.version}</version>
<executions>
<execution>
<id>default</id>
<phase>verify</phase>
<goals></goals>
</execution>
</executions>
</plugin>
<!-- Reads the current git commit and provides the current commit hash and
makes it available as the "buildNumber" maven property. Also enables
checking for uncommitted changes and stops the build when dirty . -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>buildnumber-maven-plugin</artifactId>
<version>${buildnumber-maven-plugin.version}</version>
<executions>
<execution>
<id>last-commit-hash</id>
<phase>validate</phase>
<goals>
<goal>create</goal>
</goals>
</execution>
<execution>
<id>another-last-commit-hash</id>
<phase>clean</phase>
<goals>
<goal>create</goal>
</goals>
</execution>
</executions>
<configuration>
<shortRevisionLength>7</shortRevisionLength>
<getRevisionOnlyOnce>true</getRevisionOnlyOnce>
<doCheck>${force.check.version}</doCheck>
<doUpdate>${force.check.update}</doUpdate>
</configuration>
</plugin>
<!-- Adds support for gitflow branch management -->
<plugin>
<groupId>external.atlassian.jgitflow</groupId>
<artifactId>jgitflow-maven-plugin</artifactId>
<version>${jgitflow-maven-plugin.version}</version>
<configuration>
<allowSnapshots>false</allowSnapshots>
<allowUntracked>false</allowUntracked>
<autoVersionSubmodules>true</autoVersionSubmodules>
<updateDependencies>true</updateDependencies>
<buildNumber>${buildNumber}</buildNumber>
<flowInitContext>
<masterBranchName>master</masterBranchName>
<developBranchName>devel</developBranchName>
<featureBranchPrefix>feature-</featureBranchPrefix>
<releaseBranchPrefix>release-</releaseBranchPrefix>
<hotfixBranchPrefix>hotfix-</hotfixBranchPrefix>
<versionTagPrefix></versionTagPrefix>
</flowInitContext>
</configuration>
</plugin>
<!-- Handles build, tagging, and pushing of Docker images within the natural
build lifecycle. When the "container" profile is enabled, images are
built during the compile phase and tagged as both "develop" and the
value of the maven property, "docker.image.tag", which defaults to the
current short git commmit hash, "buildNumber". When the "publish" profile
is enabled, images are pushed to the configured Docker registry. If
your target registry requires authentication, the plugin will fall back
to using the host registry authentication, so ensure that `docker login`,
or the like, has been run prior to publishing.
All images do not have to be built during initial development and testing.
The submodules that depend on a running instance of their image to test
will independently build their image prior to running integration tests.
These test images will be identical to those built when the "container"
profile is active and subsequent builds will take advantage of the cached
image to speed up the build.
To compile, build, and push all images from a clean checkout, one would perform the
following.
mvn -P agave,container,publish clean deploy -Ddocker.image.repo=agaveplatform/
Note that we specify the docker registry organization as a command line property.
We leave this empty by default to ensure we are always development with local images
and to prevent accidental push of development images. Also note the trailing slash.
This is important as this will be prepended to the image name and tag to construct
the full image name used to push.
If you already have the code compiled and packaged, and simply want to build and push
the images, you can invoke the plugin directly from the command line as in the
following examples:
mvn -P agave,container dockerfile:build # builds the image with just the commit hash tag
mvn -P agave,container dockerfile:build -Ddocker.image.tag=dockerfile:tag
mvn -P agave,container dockerfile:build dockerfile:tag
-->
<plugin>
<groupId>com.spotify</groupId>
<artifactId>dockerfile-maven-plugin</artifactId>
<version>${dockerfile-maven-plugin.version}</version>
<executions>
<execution>
<id>container-build</id>
<goals>
<goal>build</goal>
</goals>
</execution>
<execution>
<id>container-tag</id>
<goals>
<goal>tag</goal>
</goals>
<configuration>
<tag>develop</tag>
</configuration>
</execution>
<execution>
<id>container-push</id>
<goals>
<goal>push</goal>
</goals>
</execution>
</executions>
<configuration>
<skip>true</skip>
<noCache>false</noCache>
<repository>${docker.image.repo}${project.artifactId}</repository>
<tag>${docker.image.tag}</tag>
<useMavenSettingsForAuth>false</useMavenSettingsForAuth>
<googleContainerRegistryEnabled>false</googleContainerRegistryEnabled>
<buildArgs>
<WAR_FILE>target/${project.build.finalName}.war</WAR_FILE>
<WEB_DIR>target/html</WEB_DIR>
<BUILD_NUMBER>${buildNumber}</BUILD_NUMBER>
<PROJECT_VERSION>${project.version}</PROJECT_VERSION>
</buildArgs>
</configuration>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<!-- Default compilation options. For JDK 9, we must enable the deprecated
java.xml.bind module, or all our parsers and ORM break. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven-compiler-plugin.version}</version>
<configuration>
<!-- <proc>none</proc>-->
<source>${java-source.version}</source>
<target>${java-target.version}</target>
<compilerArgs>
<arg>--add-modules=java.xml.bind</arg>
</compilerArgs>
</configuration>
<executions>
<execution>
<id>default-compile</id>
<phase>compile</phase>
<goals>
<goal>compile</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- Handles javadoc build -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<version>${maven-site-plugin.version}</version>
</plugin>
<!-- Basic unit test execution all tests in group "broken" or "notReady" are
skipped. All unit tests are skipped if the "dev" profile is not enabled. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven-surefire-plugin.version}</version>
<configuration>
<argLine>--illegal-access=permit </argLine>
<skipTests>${skip.unit.tests}</skipTests>
<groups>unit</groups>
<excludedGroups>broken,notReady</excludedGroups>
<systemPropertyVariables>
<log4j.configuration>file:${basedir}/src/test/resources/log4j.properties
</log4j.configuration>
</systemPropertyVariables>
</configuration>
</plugin>
<!-- Integration test containers providing all third-party services, compute, -->
<!-- storage, etc. needed by the tests in this module. Two plugins work in tandem -->
<!-- here. The first starts up the containers using Docker Compose via the -->
<!-- docker-compose-maven-plugin. This will start all the containers and guarantee -->
<!-- they are running. The second performs a rediness check on the containers -->
<!-- ensuring they are ready to accept connections prior to the tests being run. -->
<!-- This keeps us from experiencing test failures due to a db waiting to finish -->
<!-- initializing. -->
<!-- -->
<!-- Once the integration tests finish, the containers are torn down and destroyed -->
<!-- by the docker-compose-maven-plugin. No data will be kept between invocations -->
<!-- of maven. -->
<!-- Starts and stops integration containers with Docker Compose -->
<plugin>
<groupId>com.dkanejs.maven.plugins</groupId>
<artifactId>docker-compose-maven-plugin</artifactId>
<version>${docker-compose-maven-plugin.version}</version>
<configuration>
<skip>${skip.integration.tests}</skip>
<detachedMode>true</detachedMode>
<removeVolumes>true</removeVolumes>
<projectName>${project.artifactId}</projectName>
<composeFiles>
<composeFile>${project.basedir}/target/test-classes/docker-compose.yml</composeFile>
<composeFile>${main.basedir}/compose/third-party/docker-compose.yml</composeFile>
</composeFiles>
<ignorePullFailures>true</ignorePullFailures>
</configuration>
<executions>
<execution>
<id>${project.artifactId}up</id>
<phase>pre-integration-test</phase>
<goals>
<goal>up</goal>
</goals>
<configuration>
<skip>${skip.integration.tests}</skip>
</configuration>
</execution>
<execution>
<id>${project.artifactId}down</id>
<phase>post-integration-test</phase>
<goals>
<goal>down</goal>
</goals>
<configuration>
<removeVolumes>true</removeVolumes>
<skip>${skip.integration.tests}</skip>
</configuration>
</execution>
<execution>
<id>${project.artifactId}sleep</id>
<phase>post-integration-test</phase>
<goals>
<goal>up</goal>
</goals>
<configuration>
<projectName>post-integration-pause</projectName>
<detachedMode>false</detachedMode>
<skip>${skip.post-integration.pause}</skip>
<composeFiles>
<composeFile>${main.basedir}/compose/third-party/docker-compose-utils.yml</composeFile>
</composeFiles>
<envVars>
<sleepSeconds>${docker-compose-plugin.awaitDuration}</sleepSeconds>
<sleepMessage>Pausing for ${docker-compose-plugin.awaitDuration} seconds to allow previous stack to completely tear down...</sleepMessage>
</envVars>
<services>
<service>pause</service>
</services>
</configuration>
</execution>
</executions>
</plugin>
<!-- Introduces an initial pause for containers to start followed
by a connection check via tcp or http(s) to a given port and
hostname. This provides certainty that our containers are up
for integration testing prior to the tests running -->
<plugin>
<groupId>org.agaveplatform.ops</groupId>
<artifactId>await-maven-plugin</artifactId>
<version>${await-maven-plugin.version}</version>
<executions>
<execution>
<id>await-docker-stack</id>
<phase>pre-integration-test</phase>
<goals>
<goal>Await</goal>
</goals>
<configuration>
<skip>${skip.integration.tests}</skip>
<initialWait>${await-maven-plugin.initialWait}</initialWait>
<poll>
<attempts>15</attempts>
<sleep>2000</sleep>
</poll>
<mysqlConnections>
<mysqlConnection>
<host>${foundation.db.test.host}</host>
<port>${foundation.db.test.port}</port>
<database>${foundation.db.test.database}</database>
<username>${foundation.db.test.username}</username>
<password>${foundation.db.test.password}</password>
<port>${foundation.db.test.port}</port>
<query>select * from tenants</query>
</mysqlConnection>
</mysqlConnections>
<tcpConnections>
<tcpConnection>
<host>${foundation.service.meta.db.host}</host>
<port>${foundation.service.meta.db.port}</port>
</tcpConnection>
</tcpConnections>
</configuration>
</execution>
</executions>
</plugin>
<!-- Basic integration test execution. Java integration tests are contained in classes
whose name matches "**/*IT". All java tests in group "broken" or "notReady" are
skipped. All integration tests are skipped if the "integration-test" profile is not
enabled. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>${maven-failsafe-plugin.version}</version>
<configuration>
<argLine>
--illegal-access=permit --add-modules=java.xml.bind
</argLine>
<skipTests>${skip.integration.tests}</skipTests>
<groups>integration</groups>
<excludedGroups>broken,notReady</excludedGroups>
<systemPropertyVariables>
<log4j.configuration>file:${basedir}/src/test/resources/log4j.properties
</log4j.configuration>
</systemPropertyVariables>
</configuration>
<executions>
<execution>
<phase>integration-test</phase>
<goals>
<goal>integration-test</goal>
</goals>
</execution>
</executions>
</plugin>
<!-- Handles random execution tasks during the build -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>exec-maven-plugin</artifactId>
<version>${exec-maven-plugin.version}</version>
</plugin>
<!-- Packages up source and binary assets for distribution -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>${maven-assembly-plugin.version}</version>
</plugin>
<!-- Handles deployments of build assets. We skip this as we
deploy everything as container images using other plugins -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>${maven-deploy-plugin.version}</version>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<!-- Builds jar of the java submodules during packaging -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>${maven-jar-plugin.version}</version>
</plugin>
<!-- Builds jar of the java submodules during packaging -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>${maven-war-plugin.version}</version>
<configuration>
<packagingExcludes>
WEB-INF/lib/servlet-api*.jar,
WEB-INF/lib/javax.servlet-*.jar
</packagingExcludes>
</configuration>
</plugin>
<!-- Installs packaged submodule assets into the local m2 cache -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-install-plugin</artifactId>
<version>${maven-install-plugin.version}</version>
</plugin>
<!-- Code coverage analysis for the entire project. It is enabled via the
"coverage" profile -->
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>${jacoco.version}</version>
<configuration>
<output>file</output>
<append>true</append>
</configuration>
<executions>
<execution>
<id>default-prepare-agent</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>default-report</id>
<phase>test</phase>
<goals>
<goal>report</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
</build>
<distributionManagement>
<repository>
<id>agave-releases</id>
<name>Agave Internal Release Repository</name>
<url>https://nexus.agaveplatform.org/nexus/repository/releases</url>
</repository>
<snapshotRepository>
<id>agave-snapshots</id>
<name>Agave Internal Snapshot Repository</name>
<url>https://nexus.agaveplatform.org/nexus/repository/snapshots/</url>
</snapshotRepository>
</distributionManagement>
<!-- Global Dependencies -->
<!-- -->
<!-- Only add dependencies here that are used by EVERY submodule. -->
<dependencies>
<dependency>
<!-- There are non-test compile dependencies on testng -->
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>${testng.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
<modules>
<module>agave-migrations</module>
<module>agave-protos</module>
<module>agave-transfers</module>
<module>agave-common</module>
<module>agave-postits</module>
<module>agave-usage</module>
<module>agave-tenants</module>
<module>agave-logging</module>
<module>agave-notifications</module>
<module>agave-profiles</module>
<module>agave-tags</module>
<module>agave-metadata</module>
<module>agave-systems</module>
<module>agave-monitors</module>
<module>agave-files</module>
<module>agave-apps</module>
<module>agave-jobs</module>
<module>agave-realtime</module>
<module>agave-stats</module>
<module>agave-uuids</module>
<module>agave-apidocs</module>
</modules>
<!-- Build profiles -->
<profiles>
<profile>
<id>dev</id>
<!-- *********************************************************************
** Enables unit tests. **
********************************************************************* -->
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<properties>
<skip.unit.tests>false</skip.unit.tests>
</properties>
</profile>
<profile>
<id>integration-test</id>
<!-- *********************************************************************
** Enables integration tests. DB and SFTP images will be built. **
********************************************************************* -->
<properties>
<skip.integration.tests>false</skip.integration.tests>
</properties>
</profile>
<profile>
<id>remote-data-tests</id>
<!-- **************************************************************************
** Enables integration tests exercising remote data client interactions **
** with the local instances of protocol containers dynamicall created **
** locally via Docker Compose as part of the maven lifecycle of each **
** submodule. **
************************************************************************** -->
<properties>
<skip.integration.tests>false</skip.integration.tests>
<skip.integration.irods3.tests>true</skip.integration.irods3.tests>
<skip.integration.irods4.tests>false</skip.integration.irods4.tests>
<skip.integration.sftp.tests>false</skip.integration.sftp.tests>
<skip.integration.sftprelay.tests>false</skip.integration.sftprelay.tests>
<skip.integration.http.tests>false</skip.integration.http.tests>
</properties>
</profile>
<profile>
<id>coverage</id>
<!-- **********************************************************************
** Enabled Jacoco coverage reporting on unit and integration tests **
***********************************************************************-->
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven-surefire-plugin.version}</version>
<configuration>
<forkMode>once</forkMode>
<forkCount>1</forkCount>
<reuseForks>false</reuseForks>
<argLine>@{argLine} --illegal-access=permit</argLine>
</configuration>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>${jacoco.version}</version>
</plugin>
</plugins>
</build>
<reporting>
<plugins>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>${jacoco.version}</version>
<reportSets>
<reportSet>
<reports>
<!-- select non-aggregate reports -->
<report>report</report>
</reports>
</reportSet>
</reportSets>
</plugin>
</plugins>
</reporting>
</profile>
<profile>
<id>agave</id>
<!-- *********************************************************************
** Provides the default settings used to initialize each service **
** initial runtime properties. In practice, these rarely need **
** changed since all service properties can be overridden by **
** environment variables in the container. **
********************************************************************* -->
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<properties>
<downloadSources>false</downloadSources>
<downloadJavadocs>false</downloadJavadocs>
<!-- *********************************************************************
**************************************************************************
** **
** Agave common properties **
** **
**************************************************************************
***********************************************************************-->
<skip.migrations>true</skip.migrations>
<iplant.community.username>iplant</iplant.community.username>
<iplant.community.password></iplant.community.password>
<iplant.community.charge.number>TG-MCB110022</iplant.community.charge.number>
<iplant.community.myproxy.server>myproxy.teragrid.org</iplant.community.myproxy.server>
<iplant.community.myproxy.port>7512</iplant.community.myproxy.port>
<irods.username>rods</irods.username>
<irods.password>rods</irods.password>
<irods.zone>testuser</irods.zone>
<irods.host>docker.example.com</irods.host>
<irods.port>1247</irods.port>
<irods.resource>bitol</irods.resource>
<foundation.api.version>2</foundation.api.version>
<foundation.world.username>world</foundation.world.username>
<foundation.public.username>public</foundation.public.username>
<foundation.auth.source>wso2</foundation.auth.source>
<foundation.service.slave.mode>false</foundation.service.slave.mode>
<foundation.local.scratch.dir>/scratch</foundation.local.scratch.dir>
<foundation.api.page.size.default>100</foundation.api.page.size.default>
<foundation.api.page.size.max>250</foundation.api.page.size.max>
<!-- ********************** SSH Properties ************************* -->
<foundation.maverick.log.level>ERROR</foundation.maverick.log.level>
<!-- ********************** TLS Properties ************************* -->
<foundation.keystore.path>/home/agave/jssecacerts</foundation.keystore.path>
<foundation.trusted.certs.path>/home/agave/.globus/certificates</foundation.trusted.certs.path>
<foundation.ca.certs.path>/home/agave/.globus/certificates</foundation.ca.certs.path>
<!-- ********************** Email Properties ************************* -->
<foundation.smtp.provider>log</foundation.smtp.provider>
<foundation.smtp.user>agave</foundation.smtp.user>
<foundation.smtp.password></foundation.smtp.password>
<foundation.smtp.token></foundation.smtp.token>
<foundation.smtp.host>localhost</foundation.smtp.host>
<foundation.smtp.port></foundation.smtp.port>
<foundation.smtp.auth>false</foundation.smtp.auth>
<foundation.smtp.from.name>Agave Notification Service</foundation.smtp.from.name>
<foundation.smtp.from.address>noreply@agaveplatform.org</foundation.smtp.from.address>
<!-- ********************** LDAP Properties ************************* -->
<foundation.ldap.realm>Agave Platform</foundation.ldap.realm>
<foundation.ldap.url>ldaps://ldap.example.com</foundation.ldap.url>
<foundation.ldap.port>636</foundation.ldap.port>
<foundation.ldap.dn>ou=People,dc=example,dc=com</foundation.ldap.dn>
<!-- *************************** Database **************************** -->
<foundation.db.jndi.connection>java:comp/env/jdbc/iplant_io</foundation.db.jndi.connection>
<foundation.db.host>mysql</foundation.db.host>
<foundation.db.port>3306</foundation.db.port>
<foundation.db.database>agavecore</foundation.db.database>
<foundation.db.username>agaveuser</foundation.db.username>
<foundation.db.password>password</foundation.db.password>
<foundation.db.url>jdbc:mysql://${foundation.db.host}:${foundation.db.port}/${foundation.db.database}?zeroDateTimeBehavior=convertToNull&sessionVariables=FOREIGN_KEY_CHECKS=0&relaxAutoCommit=true&tinyInt1isBit=false</foundation.db.url>
<foundation.db.bootstrap>jdbc:mysql://${foundation.db.host}:${foundation.db.port}/mavenbootstrap?sessionVariables=FOREIGN_KEY_CHECKS=0&relaxAutoCommit=true&tinyInt1isBit=false</foundation.db.bootstrap>
<foundation.db.driver>com.mysql.cj.jdbc.Driver</foundation.db.driver>
<foundation.db.postits.table>postits</foundation.db.postits.table>
<foundation.db.tenants.table>tenants</foundation.db.tenants.table>
<foundation.db.internaluser.table>internalusers</foundation.db.internaluser.table>
<foundation.db.usage.table>Usage</foundation.db.usage.table>
<foundation.db.usageservices.table>UsageServices</foundation.db.usageservices.table>
<foundation.db.usageactivities.table>UsageActivities</foundation.db.usageactivities.table>
<!-- ************************* Test Database ************************* -->
<foundation.db.test.jndi.connection>java:comp/env/jdbc/iplant_io</foundation.db.test.jndi.connection>
<foundation.db.test.host>mysql</foundation.db.test.host>
<foundation.db.test.port>3306</foundation.db.test.port>
<foundation.db.test.database>agavecore</foundation.db.test.database>
<foundation.db.test.username>agaveuser</foundation.db.test.username>
<foundation.db.test.password>password</foundation.db.test.password>
<foundation.db.test.url>jdbc:mysql://${foundation.db.test.host}:${foundation.db.test.port}/${foundation.db.test.database}?sessionVariables=FOREIGN_KEY_CHECKS=0&relaxAutoCommit=true</foundation.db.test.url>
<foundation.db.test.bootstrap>jdbc:mysql://${foundation.db.test.host}:${foundation.db.test.port}/mavenbootstrap?sessionVariables=FOREIGN_KEY_CHECKS=0&relaxAutoCommit=true</foundation.db.test.bootstrap>
<foundation.db.test.driver>com.mysql.cj.jdbc.Driver</foundation.db.test.driver>
<agave.test.slack.webhook.url>https://hooks.slack.com/services/SLACK_INCOMING_WEBHOOK</agave.test.slack.webhook.url>
<!-- **************** Minio Credentials for Integration Tests ********** -->
<s3.bucket>agavetestdata</s3.bucket>
<s3.host>http://minio</s3.host>
<s3.port>9000</s3.port>
<s3.access.key>agaveuser</s3.access.key>
<s3.secret.key>password</s3.secret.key>
<!-- **************** Default Container Host and Port for Integration Tests ********** -->
<gridftp.host>gridftp</gridftp.host>
<gridftp.port>2811</gridftp.port>
<myproxy.host>myproxy</myproxy.host>
<myproxy.port>7515</myproxy.port>
<!-- <sftp.host>sftp</sftp.host>-->
<sftp.host>test-proxy</sftp.host>
<sftp.port>10022</sftp.port>
<sftptunnel.host>test-proxy</sftptunnel.host>
<!-- <sftptunnel.host>sftptunnel</sftptunnel.host>-->
<sftptunnel.port>10033</sftptunnel.port>
<sftphidden.host>sftphidden</sftphidden.host>
<sftphidden.port>22</sftphidden.port>
<!-- <irods3.host>irods3</irods3.host>-->
<irods3.host>test-proxy</irods3.host>
<irods3.port>1247</irods3.port>
<!-- <irods3pam.host>irods3-pam</irods3pam.host>-->
<irods3pam.host>test-proxy</irods3pam.host>
<irods3pam.port>1248</irods3pam.port>
<!-- <irods4.host>irods4</irods4.host>-->
<irods4.host>test-proxy</irods4.host>
<irods4.port>1257</irods4.port>
<ftp.host>ftpd</ftp.host>
<ftp.port>10021</ftp.port>
<condor.host>test-proxy</condor.host>
<!-- <condor.host>condor</condor.host>-->
<!-- <condor.data.port>22</condor.data.port>-->
<condor.data.port>10155</condor.data.port>
<condor.port>10155</condor.port>
<gsissh.host>gridftp</gsissh.host>
<gsissh.port>2222</gsissh.port>
<ssh.host>test-proxy</ssh.host>
<!-- <ssh.host>ssh</ssh.host>-->
<!-- <ssh.data.port>22</ssh.data.port>-->
<ssh.data.port>10111</ssh.data.port>
<ssh.port>10111</ssh.port>
<loadleveler.host>test-proxy</loadleveler.host>
<!-- <loadleveler.host>openlava</loadleveler.host>-->
<!-- <loadleveler.data.port>22</loadleveler.data.port>-->
<loadleveler.data.port>10177</loadleveler.data.port>
<loadleveler.port>10177</loadleveler.port>
<lsf.host>test-proxy</lsf.host>
<!-- <lsf.host>openlava</lsf.host>-->
<!-- <lsf.data.port>22</lsf.data.port>-->
<lsf.data.port>10177</lsf.data.port>
<lsf.port>10177</lsf.port>
<moab.host>test-proxy</moab.host>
<!-- <moab.host>torque</moab.host>-->
<!-- <moab.data.port>22</moab.data.port>-->
<moab.data.port>10144</moab.data.port>