build.xml

<?xml version="1.0"?>
<project name="PathSBML" default="jar" basedir=".">

	<property name="version.number" value="1.0.0" />
	<property name="pathvisio.dir" value="../common-bundles" />
	<property name="org.pathvisio.sbgn.dir" value="../org.pathvisio.sbgn" />
	<property name="common.bundles" value="../common-bundles" />

	<import file="${common.bundles}/plugin-common.xml"/>
		<!-- embedded jars are embedded in the resulting bundle -->
		<path id="embed.jars">
			<fileset dir="lib">
				<include name="*.jar" />
			</fileset>
			<fileset dir="${common.bundles}">
				<include name="org.sbgn-with-dependencies.jar" />
				<include name="com.google.collect*.jar" />
				<include name="com.springsource.javax.xml.rpc-1.1.0.jar" />
			</fileset>
		</path>

	<path id="project.class.path">
		<fileset dir="${pathvisio.dir}/modules">
			<include name="org.pathvisio.core.jar" />
			<include name="org.pathvisio.gui.jar" />
			<include name="org.pathvisio.desktop.jar" />
		</fileset>
		<fileset dir="${common.bundles}">
			<include name="org.sbgn-with-dependencies.jar" />
			<include name="com.google.collect*.jar" />
			<include name="com.springsource.javax.xml.rpc-1.1.0.jar" />
		</fileset>
		<fileset dir="${org.pathvisio.sbgn.dir}">
			<include name="dist/org.pathvisio.sbgn.jar" />
		</fileset>
		<fileset dir="${pathvisio.dir}/lib">
			<include name="org.bridgedb.jar" />
			<include name="felix.jar" />
			<include name="com.springsource.org.jdom-1.1.0.jar" />
			<include name="org.pathvisio.jgoodies.forms.jar" />
			<include name="javax.xml.rpc_1.1.0.v201005080400.jar"/>
		</fileset>
		<fileset dir="lib">
					<include name="*.jar" />
				</fileset>
	</path>

	<target name="prepare" depends ="prepare-jar-name,prepare-common">
			<mkdir dir="build"/>
			<mkdir dir="${bundle.dest}"/>
			<mkdir dir="build/resources"/>
			<copy toDir="build/resources">
				<fileset dir="resources">
					<include name="*"/>
				</fileset>
			</copy>
			<copy toDir="build/lib">
						<fileset dir="lib">
							<include name="*.jar"/>
						</fileset>
						<fileset dir="${common.bundles}">
							<include name="org.sbgn-with-dependencies.jar" />
							<include name="com.google.collect*.jar" />
							<include name="com.springsource.javax.xml.rpc-1.1.0.jar" />
						</fileset>
			</copy>
			<fail message="Can't find ${pathvisio.dir}/modules/org.pathvisio.core.jar, please specify the path to pathvisio with -Dpathvisio.dir=....">
				<condition>
					<not><available file="${pathvisio.dir}/modules/org.pathvisio.core.jar"/></not>
				</condition>
			</fail>
		</target>

		<target name="clean">
			<delete dir="build"/>
			<delete file="${jar.name}"/>
		</target>

		<target name="compile" depends="prepare">
			<echo>Compiling: ${jar.name}</echo>
			<javac srcdir="src"
				   includes="**"
				   destdir="build"
				   debug="${debug.mode}"
				   source="1.5">
	       <classpath refid="project.class.path"/>
			</javac>
		</target>

		<target name="jar" depends="compile"> 
			<echo>Creating JAR: ${jar.name}</echo>
			<jar jarfile="${jar.name}_${version.number}.jar" manifest="META-INF/MANIFEST.MF">
			    <fileset dir="build">
				    <include name="**/*"/>
				</fileset>
	     </jar>
		</target>

		<target name="install" depends="jar"> 
			<copy toDir="${bundle.dest}" flatten="true">
				<fileset dir=".">
					<include name="${jar.name}"/>
				</fileset>
				<fileset dir="lib">
					<include name="*.jar" />
				</fileset>
				<fileset dir="${common.bundles}">
						<include name="org.sbgn-with-dependencies.jar" />
						<include name="com.google.collect*.jar" />
					</fileset>
					<fileset dir="${org.pathvisio.sbgn.dir}">
						<include name="dist/org.pathvisio.sbgn.jar" />
					</fileset>
					<fileset dir="${pathvisio.dir}/lib">
						<include name="org.bridgedb.jar" />
						<include name="felix.jar" />
						<include name="com.springsource.org.jdom-1.1.0.jar" />
						<include name="org.pathvisio.jgoodies.forms.jar" />
						<include name="javax.xml.rpc_1.1.0.v201005080400.jar"/>
					</fileset>
			</copy>
			<delete file="${jar.name}"/>
		</target>

		<target name="dist-clean" depends="clean">
			<delete dir="${bundle.dest}"/>
		</target>

</project>