DESCRIPTION

Package: synder
Type: Package
Title: Use Synteny to Filter Genomic Search 
Version: 0.28.0
Author: Zebulun Arendsee
Maintainer: Zebulun Arendsee <arendsee@iastate.edu>
URL: https://github.com/arendsee/synder
BugReports: https://github.com/arendsee/synder/issues
Description:
    A synteny map is a set of linked intervals between two genomes.  The main
    function of Synder is to use a synteny map to trace an interval in one
    genome to a narrow search space on another genome. This work is funded by
    NSF grant IOS-1546858.
License: MIT + file LICENSE
Depends:
    R (>= 3.4.0)
Imports:
    Rcpp (>= 0.12.7),
    methods,
    S4Vectors,
    IRanges,
    GenomicRanges,
    CNEr (>= 1.12.1),
    BiocGenerics,
    GenomeInfoDb,
    dplyr,
    rlang,
    reshape2,
    readr,
    tibble,
    magrittr,
    ggplot2
SystemRequirements:
    C++11
LinkingTo: Rcpp
RoxygenNote: 6.1.1
Suggests:
    testthat,
    rmarkdown,
    knitr,
    covr
VignetteBuilder: knitr
BiocViews: 
Collate: 
    'RcppExports.R'
    'classes.R'
    'cast.R'
    'data.R'
    'plot.R'
    'util.R'
    'relate.R'
    'print.R'
    'read.R'
    'interpret.R'
    'rsynder.R'
    'types.R'
Encoding: UTF-8