NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(as.data.frame,DumpResult)
S3method(as.data.frame,GFF)
S3method(as.data.frame,SearchResult)
S3method(as.data.frame,Seqinfo)
S3method(as.data.frame,Synmap)
S3method(as_conlen,"NULL")
S3method(as_conlen,Seqinfo)
S3method(as_conlen,character)
S3method(as_conlen,data.frame)
S3method(as_gff,"NULL")
S3method(as_gff,GFF)
S3method(as_gff,GRanges)
S3method(as_gff,character)
S3method(as_gff,data.frame)
S3method(as_synmap,"NULL")
S3method(as_synmap,Axt)
S3method(as_synmap,GRangePairs)
S3method(as_synmap,Synmap)
S3method(as_synmap,character)
S3method(as_synmap,data.frame)
S3method(plot,DumpResult)
S3method(plot,SearchResult)
S3method(plot,Synmap)
S3method(print,DumpResult)
S3method(print,GFF)
S3method(print,SearchResult)
S3method(print,Synmap)
export(anon_search)
export(as_conlen)
export(as_gff)
export(as_synmap)
export(dump)
export(featureMap)
export(flag_summary)
export(is_incoherent)
export(is_unassembled)
export(load_blastp_file)
export(load_tblastn_file)
export(make_blastp_map)
export(make_tblastn_gene_map)
export(make_tblastn_si_map)
export(neighborhood_madness)
export(read_conlen)
export(read_gff)
export(read_synmap)
export(search)
export(syntenic_density)
export(syntenic_scatter)
exportClasses(DumpResult)
exportClasses(GFF)
exportClasses(SearchResult)
exportClasses(Synmap)
importClassesFrom(CNEr,GRangePairs)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(S4Vectors,Annotated)
importClassesFrom(S4Vectors,Pairs)
importClassesFrom(S4Vectors,Vector)
importFrom(Rcpp,sourceCpp)
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(rlang,.data)
useDynLib(synder)