pyproject.toml

[build-system]
requires = ["setuptools>=61.0.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "merrin"
version = "2.1.0"
authors = [
  { name="Kerian Thuillier", email="kerian.thuillier@irisa.fr" },
]
description = "MERRIN: MEtabolic Regulation Rule INference."
keywords = [
  "Answer Set Programming",
  "Flux Balance Analysis",
  "Boolean Network",
  "Regulatory Rules",
  "Omics data"
]
readme = "README.md"
requires-python = ">=3.7"
dependencies = [
    "merrinasp@git+https://github.com/kthuillier/merrinasp >= 1.1.0",
    "clingo >=5.6.1",
    "pandas",
    "numpy",
    "python-libsbml"
]
classifiers = [
    "Programming Language :: Python :: 3.10",
    "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
    "Operating System :: Unix",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Intended Audience :: Science/Research",
]

[project.urls]
Homepage = "https://github.com/bioasp/merrin"
Repository = "https://github.com/bioasp/merrin"
"Bug Tracker" = "https://github.com/bioasp/merrin/issues"

[project.scripts]
merrin = "merrin.app:main"

[tool.setuptools.package-data]
merrin = [
  "py.typed",
  "asp/model/learn.lp",
  "asp/model/learn_from_trace.lp"
]

[tool.setuptools.packages.find]
where = ["src"]