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references.bib
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@article{knuth84,
author = {Knuth, Donald E.},
title = {Literate Programming},
year = {1984},
issue_date = {May 1984},
publisher = {Oxford University Press, Inc.},
address = {USA},
volume = {27},
number = {2},
issn = {0010-4620},
url = {https://doi.org/10.1093/comjnl/27.2.97},
doi = {10.1093/comjnl/27.2.97},
journal = {Comput. J.},
month = may,
pages = {97–111},
numpages = {15}
}
@article{allesina2019,
title = {Computing Skills for Biologists},
author = {Allesina, Stefano and Wilmes, Madlen},
year = {2019},
month = {01},
date = {2019-01-15},
doi = {10.2307/j.ctvc77jrc},
url = {http://dx.doi.org/10.2307/j.ctvc77jrc}
}
@book{meneely2017,
title={Genetics: genes, genomes, and evolution},
author={Meneely, Philip Mark and Hoang, Rachel Dawes and Okeke, Iruka N and Heston, Katherine},
year={2017},
publisher={Oxford University Press}
}
@book{brown2018,
title={Genomes 4},
author={Brown, Terence A},
year={2018},
publisher={Garland science}
}
@article{giani2020,
title={Long walk to genomics: History and current approaches to genome sequencing and assembly},
author={Giani, Alice Maria and Gallo, Guido Roberto and Gianfranceschi, Luca and Formenti, Giulio},
journal={Computational and Structural Biotechnology Journal},
volume={18},
pages={9--19},
year={2020},
publisher={Elsevier}
}
@book{makinen2015,
title={Genome-scale algorithm design},
author={M{\"a}kinen, Veli and Belazzougui, Djamal and Cunial, Fabio and Tomescu, Alexandru I},
year={2015},
publisher={Cambridge University Press}
}
@misc{dudley2009,
title={A quick guide for developing effective bioinformatics programming skills},
author={Dudley, Joel T and Butte, Atul J},
journal={PLOS computational biology},
volume={5},
number={12},
pages={e1000589},
year={2009},
publisher={Public Library of Science San Francisco, USA}
}
@article{perkel2021,
title={Five reasons why researchers should learn to love the command line},
author={Perkel, Jeffrey M and others},
journal={Nature},
volume={590},
number={7844},
pages={173--174},
year={2021},
publisher={Nature}
}
@misc{brandies2021,
title={Ten simple rules for getting started with command-line bioinformatics},
author={Brandies, Parice A and Hogg, Carolyn J},
journal={PLoS Computational Biology},
volume={17},
number={2},
pages={e1008645},
year={2021},
publisher={Public Library of Science San Francisco, CA USA}
}