From 083eb58ebebbde307375f3585c8671bc58689a49 Mon Sep 17 00:00:00 2001 From: Filip Makosza Date: Wed, 27 Nov 2024 16:48:23 +0000 Subject: [PATCH 1/2] Update and fix Dockerfile --- Dockerfile | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index 2fb20c2..9720141 100644 --- a/Dockerfile +++ b/Dockerfile @@ -51,7 +51,7 @@ RUN bash build/opt-build.sh $OPT COPY . . RUN bash build/opt-build-local.sh $OPT -FROM ubuntu:20.04 +FROM ubuntu:24.04 LABEL maintainer="cgphelp@sanger.ac.uk"\ uk.ac.sanger.cgp="Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute" \ @@ -75,9 +75,11 @@ psmisc \ time \ zlib1g \ liblzma5 \ -libncurses5 \ +libncurses6 \ exonerate \ openssl \ +adduser \ +libdeflate0 \ unattended-upgrades && \ unattended-upgrade -d -v && \ apt-get remove -yq unattended-upgrades && \ @@ -89,7 +91,7 @@ RUN mkdir -p $OPT COPY --from=builder $OPT $OPT ## USER CONFIGURATION -RUN adduser --disabled-password --gecos '' ubuntu && chsh -s /bin/bash && mkdir -p /home/ubuntu +RUN chsh -s /bin/bash && mkdir -p /home/ubuntu USER ubuntu WORKDIR /home/ubuntu From 9c691f51f3869168cec7d8e079c0ef5450dec480 Mon Sep 17 00:00:00 2001 From: Filip Makosza Date: Wed, 27 Nov 2024 16:48:41 +0000 Subject: [PATCH 2/2] Bump version number, update changelog --- CHANGES.md | 4 ++++ perl/lib/Sanger/CGP/Vaf.pm | 2 +- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/CHANGES.md b/CHANGES.md index 0262288..700f348 100755 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,5 +1,9 @@ # CHANGES +## 5.7.4 + +* Fix Dockerfile + ## 5.7.3 * Exit with a clearer error message when file does not pass the minimum read threshold diff --git a/perl/lib/Sanger/CGP/Vaf.pm b/perl/lib/Sanger/CGP/Vaf.pm index fed5c17..d983f18 100755 --- a/perl/lib/Sanger/CGP/Vaf.pm +++ b/perl/lib/Sanger/CGP/Vaf.pm @@ -2,7 +2,7 @@ package Sanger::CGP::Vaf; use strict; use Const::Fast qw(const); -our $VERSION = '5.7.3'; +our $VERSION = '5.7.4'; const my $LICENSE => "#################