cargo-manifest.yml

metadata:
  # name of python package
  PACKAGE: cult-cargo
  # its repository
  GITHUB_REPOSITORY: caracal-pipeline/cult-cargo
  # registry to use. Use module::filename.yml::variable format to pull from a config file inside a python module
  REGISTRY: cultcargo.genesis::cult-cargo-base.yml::vars.cult-cargo.images.registry
  # image bundle version. Use module::filename.yml::variable format to pull from a config file inside a python module
  BUNDLE_VERSION: cultcargo.genesis::cult-cargo-base.yml::vars.cult-cargo.images.version
  # prefix to be removed from image version when comparing to python package version
  BUNDLE_VERSION_PREFIX: cc
  # path to images. Use module::filename to refer to content of module
  BASE_IMAGE_PATH: cultcargo::images

assign:
  # standard variables used in templated Docker files
  pre_install: ''
  post_install: ''
  extra_deps: ''

  default_python_version: '3.10'
  # slim_python_image: python:3.10-slim
  # # base cult image for generic Python-based packages
  # base_python_image: python-base:3.10
  # # corresponding python binary
  # python: python3.10

images:
  # Bare-bones base images based off kern, with updates applied
  # These are suitable as base images for binary installs
  base-cult:
    versions:
      'kern7':
        kern_version: 7
      'kern8':
        kern_version: 8
      'kern9':
        kern_version: 9

  # This adds a specific version of python on top of a base image, and upgrades pip
  # These are suitable as base images for pip installs
  python-base:
    versions:
#      '3.12': {}   # having some trouble with 3.12 so ignoring it for now
      '3.11': {}
      '3.10': {}
      '3.9': {}
      '3.8': {}

  # Python base will all the astro goodies (and stimela) thrown in
  # This is the default image stimela uses for python cabs
  python-astro:
    versions:
#      '3.12': {}
      '3.11': {}
      '3.10': {}
      '3.9': {}
      '3.8': {}

  # Package-specific images follow

  aimfast:
    versions:
      '1.3.4':
        package: aimfast==1.3.4
      master:
        package: git+https://github.com/Athanaseus/aimfast.git

  meqtrees:
    versions:
      kern9:
        dockerfile: Dockerfile.kern9

  wsclean:
    versions:
      # these versions shipped in KERN
      '2.10.1-kern7':  # frozen version
        kern_version: 7
        dockerfile: Dockerfile.kern
      '3.1-kern8':     # frozen version
        kern_version: 8
        dockerfile: Dockerfile.kern
      'kern9':
        kern_version: 9
        dockerfile: Dockerfile.kern
      ## 2.9/10 won't build with this recipe, figure it out later
      # '2.9':
      #   dockerfile: Dockerfile.build.2x
      #   tag: wsclean2.9
      # '2.10.1':
      #   dockerfile: Dockerfile.build.2x
      #   tag: v2.10.1
      '3.0.1':
        dockerfile: Dockerfile.build
      '3.1':
        dockerfile: Dockerfile.build
      '3.2':
        dockerfile: Dockerfile.build
      '3.3':
        dockerfile: Dockerfile.build
      '3.4':
        dockerfile: Dockerfile.build
      '3.5':
        dockerfile: Dockerfile.build

  casa:
    assign:
      url: https://casa.nrao.edu/download/distro/casa/release/el7
    versions:
      _base:
        dockerfile: Dockerfile.base
      '4.7.2':
        tarball: casa-release-4.7.2-el7.tar.gz
        entrypoint: /casa-release-4.7.2-el7/bin/casa
      '5.8.0':
        tarball: casa-release-5.8.0-109.el7.tar.gz
        entrypoint: /casa-release-5.8.0-109.el7/bin/casa

  casa6:
    versions:
      # '6.5':  # deprecated
      #     wheel_version: 6.5.6.22
      '6.6':
          wheel_version: 6.6.5.31

  breizorro:
    versions:
      '0.1.1':
        package: breizorro==0.1.1
      latest:
        package: breizorro
      master:
        package: git+https://github.com/ratt-ru/breizorro

  shadems:
    versions:
      '0.5.3':
        package: shadems==0.5.3
      latest:
        package: shadems
      master:
        package: git+https://github.com/ratt-ru/shadeMS

  crystalball:
    assign:
      extra_deps: -U matplotlib
    versions:
      master:
        package: git+https://github.com/caracal-pipeline/crystalball
      '0.4.2': 
        package: crystalball==0.4.2
      latest:
        package: crystalball  

  tricolour:
    assign:
      default_python_version: '3.8'
      # python: python3.8
      # extra_deps: -U scipy 
    #  pre_install: RUN pip uninstall -y bokeh # bokeh causes deps conflict with numpy pin in tricolour
    #  extra_deps: numpy\<1.20 # numba==0.54.0 bokeh\<3 psutil
    versions:
      '0.1.8.1':
        package: tricolour==0.1.8.1
      latest:
        package: tricolour
      master:
        # pre_install: RUN pip install -U
        package: git+https://github.com/ratt-ru/tricolour

  smops:
    versions:
      '0.1.7':
        package: smops==0.1.7
      latest:
        package: smops
      master:
        package: git+https://github.com/Mulan-94/smops

  msutils:
    versions:
      '1.2.0':
        package: msutils==1.2.0
      latest:
        package: msutils
      master:
        package: git+https://github.com/SpheMakh/msutils

  quartical:
    assign:
      # base image for generic Python-based packages
      base_python_image: python-astro:3.10
      # corresponding python binary
      python: python3.10
    versions:
      '0.2.2':
        package: quartical==0.2.2
      '0.2.3':
        package: quartical==0.2.3
      '0.2.4':
        package: quartical==0.2.4
      '0.2.5':
        package: quartical==0.2.5
      latest:
        package: quartical
      master:
        package: git+https://github.com/ratt-ru/QuartiCal

  cubical:
    versions:
      '1.6.4':
        package: cubical==1.6.4
      latest:
        package: cubical
      master:
        package: git+https://github.com/ratt-ru/CubiCal

  pfb-imaging:
    assign:
      # base image for generic Python-based packages
      base_python_image: python-astro:3.10
      # corresponding python binary
      python: python3.10
    versions:
      '0.0.4':
        package: pfb-imaging==0.0.4
      '0.0.5':
        package: pfb-imaging==0.0.4
      latest:
        package: git+https://github.com/ratt-ru/pfb-imaging
      master:
        package: git+https://github.com/ratt-ru/pfb-imaging

  ddfacet:
    assign:
      # base image for generic Python-based packages
      base_python_image: python-astro:3.10
      # corresponding python binary
      python: python3.10
    versions:
      # experimental branch, Oleg only
      useapp-meerklass:
        experimental_dependencies:
          - /home/oms/projects/cult-cargo/cultcargo/images/ddfacet/DDFacet-useapp-meerklass
          - /home/oms/projects/cult-cargo/cultcargo/images/ddfacet/killMS-useapp-meerklass
        pre_install: |
          ADD DDFacet-useapp-meerklass DDFacet-branch
          ADD killMS-useapp-meerklass killMS-branch
        package: -e ./DDFacet-branch ./killMS-branch
      '0.8':
        package: DDFacet==0.8.0.0 killMS==3.2.0

  mosaic-queen:
    assign:
      pre_install: RUN apt update && apt install -y montage && rm -rf /var/lib/apt/lists/* && rm -rf /var/cache/apt/archives
    versions:
      '1.1.1':
        package: mosaic-queen==1.1.1
      latest:
        package: mosaic-queen
      master:
        package: git+https://github.com/caracal-pipeline/MosaicQueen

  spimple:
    versions:
      master:
        package: git+https://github.com/landmanbester/spimple.git
      base:
        package: git+https://github.com/landmanbester/spimple.git@dropzweights

  sunblocker:
    versions:
      '1.0.1':
        package: sunblocker==1.0.1
      master:
        package: git+https://github.com/gigjozsa/sunblocker.git

  rfinder:
    versions:
      master:
        package: git+https://github.com/caracal-pipeline/RFInder.git