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NEWS
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CHANGES IN VERSION 1.5.3
-------------------------
BUG FIXES
o Fix a bug, ID mapping, in function OutputNovelJun.R
CHANGES IN VERSION 1.5.4
-------------------------
BUG FIXES
o Fix a bug, novel junction coding sequence on '-' strand, in function OutputNovelJun.R
CHANGES IN VERSION 1.5.5
-------------------------
BUG FIXES
o Fix a bug in function OutputNovelJun.R
CHANGES IN VERSION 1.8.2
-------------------------
UPDATED FUNCTIONS
o Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages
CHANGES IN VERSION 1.13.1
-------------------------
BUG FIXES
o Fix a small bug in function JunctionType.R
NEW FEATURES
o Update the function OutputVarproseq.R to output a data frame 'snvproseq'
o Add a function OutputVarprocodingseq.R to output a data frame 'snvprocoding'
CHANGES IN VERSION 1.13.2
-------------------------
UPDATED FUNCTIONS
o Update functions PrepareAnnotationEnsembl.R and PrepareAnnotationRefseq.R due to updates in depending packages
CHANGES IN VERSION 1.14.1
-------------------------
UPDATED FUNCTIONS
o Update mouse dbsnp version part in function PrepareAnnotationEnsembl.R
o Update function OutputVarproseq.R, JunctionType.R and calculateRPKM.R
NEW FEATURES
o Update function OutputNovelJun.R to save '_jun_anno.RData', '_coding.RData' and '_junpep.RData', which could be used as input for proBAMr package