Devtools::document() and R CMD check

Author: Charles Plessy

DESCRIPTION

@@ -18,6 +18,7 @@ Imports:
     formula.tools,
     GenomeInfoDb,
     GenomicAlignments,
+    GenomicFeatures,
     GenomicRanges (>= 1.37.16),
     ggplot2 (>= 2.2.0),
     gtools,

NAMESPACE

@@ -105,6 +105,10 @@ importFrom(GenomeInfoDb,seqnames)
 importFrom(GenomeInfoDb,sortSeqlevels)
 importFrom(GenomicAlignments,qwidth)
 importFrom(GenomicAlignments,readGAlignments)
+importFrom(GenomicFeatures,exons)
+importFrom(GenomicFeatures,genes)
+importFrom(GenomicFeatures,promoters)
+importFrom(GenomicFeatures,transcripts)
 importFrom(GenomicRanges,GPos)
 importFrom(GenomicRanges,GRanges)
 importFrom(GenomicRanges,GRangesList)

R/Annotations.R

@@ -440,6 +440,8 @@ msScope_annotation <- function(libs) {
 #' annotateCTSS(exampleCAGEexp, exampleZv9_annot)
 #' colData(exampleCAGEexp)
 #' 
+#' @importFrom GenomicFeatures genes
+#' 
 #' @export
 
 setGeneric("annotateCTSS", function(object, ranges, upstream=500, downstream=500)