Commit 6d30c4f Charles Plessy
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lines changed Original file line number Diff line number Diff line change @@ -44,18 +44,23 @@ Depends:
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methods,
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MultiAssayExperiment,
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R (>= 4.1.0)
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+ Remotes:
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+ url::http://promshift.genereg.net/CAGEr/PackageSource/ENCODEprojectCAGE_1.0.1.tar.gz,
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+ url::http://promshift.genereg.net/CAGEr/PackageSource/ZebrafishDevelopmentalCAGE_0.99.0.tar.gz
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Suggests:
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BSgenome.Dmelanogaster.UCSC.dm3,
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BSgenome.Drerio.UCSC.danRer7,
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BSgenome.Hsapiens.UCSC.hg18,
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BSgenome.Hsapiens.UCSC.hg19,
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BSgenome.Mmusculus.UCSC.mm9,
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DESeq2,
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+ ENCODEprojectCAGE,
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FANTOM3and4CAGE,
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ggseqlogo,
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BiocStyle,
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knitr,
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- rmarkdown
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+ rmarkdown,
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+ ZebrafishDevelopmentalCAGE
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Description: The _CAGEr_ package identifies transcription start sites (TSS) and
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their usage frequency from CAGE (Cap Analysis Gene Expression) sequencing data.
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It normalises raw CAGE tag count, clusters TSSs into tag clusters (TC) and
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