Analysis and plotting library for base substitution spectra and signatures.
❯ pip install nucleicFeatures:
- Model DNA and variant alleles within their local context using an elegant API
- Combine single nucleotide variants into spectrums of mutagenesis
- Fetch COSMIC signatures of mutation, as well as other published signatures
- SVG plotting functions for displaying single nucleotide variant spectrums
Read the documentation at: nucleic.readthedocs.io
from nucleic.cosmic import fetch_cosmic_signatures
from nucleic.plotting import trinucleotide_spectrum
signatures = fetch_cosmic_signatures()
canvas, (ax1, ax2) = trinucleotide_spectrum(signatures['Signature 24'])