From 0304132ede7cf9539c1478f9366b751d3f5f0e2f Mon Sep 17 00:00:00 2001 From: Aliaksandr Dziarkach <18146690+AliaksandrDziarkach@users.noreply.github.com> Date: Thu, 19 Dec 2024 18:01:45 +0300 Subject: [PATCH] Backmerge: #2654 - Arrow size become 2 bonds length after indigo changed default arrow size to 1 (#2655) backmerge to 1.26 --- .../indigo/src/indigo_product_enumerator.cpp | 2 +- api/c/tests/unit/tests/formats.cpp | 5 +- .../ref/formats/rxn_no_layout.py.out | 112 +- .../tests/basic/ref/crazystereo.ket | 54 +- .../tests/formats/ref/2485-bad-layout.ket | 40 +- .../tests/formats/ref/2531-bad-layout.ket | 98 +- .../tests/formats/ref/all_aminoacids.ket | 42 +- .../tests/formats/ref/aminoacids_variants.ket | 6 +- .../tests/formats/ref/break_peptide.ket | 1030 ++++++------ .../integration/tests/formats/ref/comment.ket | 416 ++--- .../tests/formats/ref/dna_acgtu.ket | 34 +- .../tests/formats/ref/dna_variants.ket | 10 +- .../formats/ref/helm_aminoacids_variants.ket | 6 +- .../tests/formats/ref/helm_annotations.ket | 34 +- .../tests/formats/ref/helm_chem_peptide.ket | 50 +- .../tests/formats/ref/helm_chem_rna.ket | 8 +- .../tests/formats/ref/helm_chem_rna_hydro.ket | 8 +- .../tests/formats/ref/helm_mixed_base.ket | 26 +- .../tests/formats/ref/helm_mixed_custom.ket | 18 +- .../tests/formats/ref/helm_multi_char_rna.ket | 34 +- .../tests/formats/ref/helm_no_left_ap.ket | 2 +- .../tests/formats/ref/helm_peptide.ket | 4 +- .../formats/ref/helm_rna_without_base.ket | 2 +- .../tests/formats/ref/helm_simple_rna.ket | 34 +- .../tests/formats/ref/helm_smiles.ket | 14 +- .../tests/formats/ref/helm_smiles_sugar.ket | 4 +- .../tests/formats/ref/idt_32moera.ket | 2 +- .../tests/formats/ref/idt_52moera.ket | 4 +- .../tests/formats/ref/idt_52moera_32moera.ket | 10 +- .../tests/formats/ref/idt_52moera_i2moera.ket | 12 +- .../tests/formats/ref/idt_52moera_sp.ket | 4 +- .../formats/ref/idt_52moera_sp_32moera.ket | 10 +- .../formats/ref/idt_52moera_sp_i2moera_sp.ket | 12 +- .../formats/ref/idt_52moera_with_3phos.ket | 6 +- .../tests/formats/ref/idt_bases.ket | 42 +- .../tests/formats/ref/idt_i2moera.ket | 4 +- .../tests/formats/ref/idt_i2moera_32moera.ket | 10 +- .../tests/formats/ref/idt_i2moera_sp.ket | 4 +- .../formats/ref/idt_i2moera_sp_32moera.ket | 10 +- .../tests/formats/ref/idt_i2moera_t.ket | 10 +- .../tests/formats/ref/idt_many_molecules.ket | 134 +- .../tests/formats/ref/idt_mixed.ket | 24 +- .../tests/formats/ref/idt_mixed_custom.ket | 18 +- .../tests/formats/ref/idt_mixed_std.ket | 26 +- .../tests/formats/ref/idt_mod_phosphates.ket | 10 +- .../tests/formats/ref/idt_modifications.ket | 18 +- .../tests/formats/ref/idt_prefix_suffix.ket | 50 +- .../formats/ref/idt_rna_dna_mixed_custom.ket | 10 +- .../formats/ref/idt_single_nucleoside.ket | 2 +- .../tests/formats/ref/idt_std_phosphates.ket | 24 +- .../tests/formats/ref/idt_t_i2moera.ket | 12 +- .../tests/formats/ref/idt_unresolved.ket | 2 +- .../tests/formats/ref/idt_unresolved_many.ket | 64 +- .../tests/formats/ref/idt_unsplit.ket | 4 +- .../tests/formats/ref/multiseq.ket | 1386 ++++++++--------- .../tests/formats/ref/peptides_3letter.ket | 50 +- .../ref/peptides_3letter_line_break.ket | 6 +- .../tests/formats/ref/rna_acgtu.ket | 34 +- .../tests/formats/ref/rna_variants.ket | 18 +- .../integration/tests/formats/ref/spaces.ket | 60 +- .../tests/formats/ref/test_1881.ket | 6 +- .../tests/formats/ref/test_dna.ket | 1010 ++++++------ .../tests/formats/ref/test_peptide.ket | 998 ++++++------ .../tests/formats/ref/test_rna.ket | 1010 ++++++------ .../tests/reaction/reactions/issue_1205.ket | 36 +- api/wasm/indigo-ketcher/test/dna_ref.ket | 2 +- api/wasm/indigo-ketcher/test/helm_maxmgc.ket | 2 +- api/wasm/indigo-ketcher/test/idt_maxmgc.ket | 2 +- api/wasm/indigo-ketcher/test/peptide_ref.ket | 2 +- .../test/peptide_ref_3_letter.ket | 2 +- api/wasm/indigo-ketcher/test/rna_ref.ket | 2 +- api/wasm/indigo-ketcher/test/test_dna_ref.ket | 2 +- .../indigo-ketcher/test/test_peptide_ref.ket | 2 +- api/wasm/indigo-ketcher/test/test_rna_ref.ket | 2 +- core/indigo-core/layout/metalayout.h | 3 +- core/indigo-core/layout/reaction_layout.h | 1 + .../layout/src/reaction_layout.cpp | 2 +- .../layout/src/sequence_layout.cpp | 2 +- .../molecule/src/sequence_loader.cpp | 24 +- data/molecules/basic/idt_mixed_std.ket | 26 +- .../service/tests/api/ref/dna_fasta_ref.ket | 2 +- .../backend/service/tests/api/ref/dna_ref.ket | 2 +- .../service/tests/api/ref/helm_ambiguous.ket | 2 +- .../service/tests/api/ref/idt_maxmgc.ket | 2 +- .../tests/api/ref/peptide_fasta_ref.ket | 2 +- .../service/tests/api/ref/peptide_ref.ket | 2 +- .../service/tests/api/ref/rna_fasta_ref.ket | 2 +- .../backend/service/tests/api/ref/rna_ref.ket | 2 +- 88 files changed, 3671 insertions(+), 3666 deletions(-) diff --git a/api/c/indigo/src/indigo_product_enumerator.cpp b/api/c/indigo/src/indigo_product_enumerator.cpp index 4c210fa12b..0a58c51dd3 100644 --- a/api/c/indigo/src/indigo_product_enumerator.cpp +++ b/api/c/indigo/src/indigo_product_enumerator.cpp @@ -125,7 +125,7 @@ CEXPORT int indigoReactionProductEnumerate(int reaction, int monomers) Reaction& out_reaction = out_reactions[k]; if (has_coord && self.rpe_params.is_layout) { - ReactionLayout layout(out_reaction, self.smart_layout); + ReactionLayout layout(out_reaction, self.smart_layout, self.layout_options); layout.setLayoutOrientation((LAYOUT_ORIENTATION)self.layout_orientation); layout.make(); out_reaction.markStereocenterBonds(); diff --git a/api/c/tests/unit/tests/formats.cpp b/api/c/tests/unit/tests/formats.cpp index 7deca25cda..31f5816975 100644 --- a/api/c/tests/unit/tests/formats.cpp +++ b/api/c/tests/unit/tests/formats.cpp @@ -293,7 +293,10 @@ TEST_F(IndigoApiFormatsTest, idt_to_ket) obj = indigoLoadIdtFromString("ARAS", library); indigoSetOptionBool("json-saving-pretty", true); const char* res = indigoJson(obj); - // printf("res=%s", res); + // std::ofstream os(dataPath("molecules/basic/idt_mixed_std.ket"), std::ios::out | std::ios::binary); + // os.write(res, std::strlen(res)); + // os.close(); + std::ifstream is(dataPath("molecules/basic/idt_mixed_std.ket"), std::ios::binary | std::ios::ate); auto size = is.tellg(); std::string str(size, '\0'); // construct string to stream size diff --git a/api/tests/integration/ref/formats/rxn_no_layout.py.out b/api/tests/integration/ref/formats/rxn_no_layout.py.out index 60ecfdc346..dabf46ff57 100644 --- a/api/tests/integration/ref/formats/rxn_no_layout.py.out +++ b/api/tests/integration/ref/formats/rxn_no_layout.py.out @@ -29,7 +29,7 @@ { "type": "plus", "location": [ - 8.501083, + 5.751083, 0.0, 0.0 ] @@ -37,7 +37,7 @@ { "type": "plus", "location": [ - 18.902166, + 12.252167, 0.0, 0.0 ] @@ -45,7 +45,7 @@ { "type": "plus", "location": [ - 25.302164, + 14.752167, 0.0, 0.0 ] @@ -53,7 +53,7 @@ { "type": "plus", "location": [ - 31.702164, + 17.252167, 0.0, 0.0 ] @@ -61,7 +61,7 @@ { "type": "plus", "location": [ - 39.102184, + 20.752186, 0.0, 0.0 ] @@ -69,7 +69,7 @@ { "type": "plus", "location": [ - 57.405941, + 30.755943, 0.0, 0.0 ] @@ -80,12 +80,12 @@ "mode": "open-angle", "pos": [ { - "x": 46.002205, + "x": 24.002205, "y": 0.0, "z": 0.0 }, { - "x": 48.002201, + "x": 25.002205, "y": 0.0, "z": 0.0 } @@ -100,7 +100,7 @@ { "label": "C", "location": [ - 2.802363, + 2.002364, 0.867686, 0.0 ] @@ -108,7 +108,7 @@ { "label": "C", "location": [ - 4.301062, + 3.501062, 0.003001, 0.0 ] @@ -116,7 +116,7 @@ { "label": "C", "location": [ - 3.803052, + 3.003052, 0.867352, 0.0 ] @@ -124,7 +124,7 @@ { "label": "C", "location": [ - 3.800719, + 3.000719, -0.864017, 0.0 ] @@ -132,7 +132,7 @@ { "label": "C", "location": [ - 2.300021, + 1.500021, -0.002667, 0.0 ] @@ -140,7 +140,7 @@ { "label": "C", "location": [ - 2.805031, + 2.005032, -0.865684, 0.0 ] @@ -148,7 +148,7 @@ { "label": "C", "location": [ - 2.302354, + 1.502354, 1.733703, 0.0 ] @@ -156,7 +156,7 @@ { "label": "C", "location": [ - 2.308355, + 1.508355, -1.733703, 0.0 ] @@ -164,7 +164,7 @@ { "label": "C", "location": [ - 1.3, + 0.5, -0.005332, 0.0 ] @@ -172,7 +172,7 @@ { "label": "C", "location": [ - 5.301084, + 4.501083, 0.002667, 0.0 ] @@ -257,7 +257,7 @@ { "label": "C", "location": [ - 13.203446, + 8.503447, 0.867686, 0.0 ] @@ -265,7 +265,7 @@ { "label": "C", "location": [ - 14.702145, + 10.002145, 0.003001, 0.0 ] @@ -273,7 +273,7 @@ { "label": "C", "location": [ - 14.204135, + 9.504135, 0.867352, 0.0 ] @@ -281,7 +281,7 @@ { "label": "C", "location": [ - 14.201801, + 9.501802, -0.864017, 0.0 ] @@ -289,7 +289,7 @@ { "label": "C", "location": [ - 12.701104, + 8.001104, -0.002667, 0.0 ] @@ -297,7 +297,7 @@ { "label": "C", "location": [ - 13.206115, + 8.506115, -0.865684, 0.0 ] @@ -305,7 +305,7 @@ { "label": "C", "location": [ - 12.703437, + 8.003437, 1.733703, 0.0 ] @@ -313,7 +313,7 @@ { "label": "C", "location": [ - 12.709438, + 8.009439, -1.733703, 0.0 ] @@ -321,7 +321,7 @@ { "label": "C", "location": [ - 11.701083, + 7.001083, -0.005332, 0.0 ] @@ -329,7 +329,7 @@ { "label": "C", "location": [ - 15.702167, + 11.002167, 0.002667, 0.0 ] @@ -414,7 +414,7 @@ { "label": "O", "location": [ - 22.102165, + 13.502167, 0.0, 0.0 ] @@ -428,7 +428,7 @@ { "label": "O", "location": [ - 28.502163, + 16.002167, 0.0, 0.0 ] @@ -442,7 +442,7 @@ { "label": "O", "location": [ - 34.902164, + 18.502167, 0.0, 0.0 ], @@ -451,7 +451,7 @@ { "label": "O", "location": [ - 35.902184, + 19.502186, 0.0, 0.0 ] @@ -473,7 +473,7 @@ { "label": "O", "location": [ - 42.302185, + 22.002186, 0.0, 0.0 ] @@ -481,7 +481,7 @@ { "label": "O", "location": [ - 43.302204, + 23.002205, 0.0, 0.0 ] @@ -503,7 +503,7 @@ { "label": "C", "location": [ - 52.707241, + 28.007244, 0.867686, 0.0 ] @@ -511,7 +511,7 @@ { "label": "C", "location": [ - 54.20594, + 29.505945, 0.003001, 0.0 ] @@ -519,7 +519,7 @@ { "label": "C", "location": [ - 53.707932, + 29.007935, 0.867352, 0.0 ] @@ -527,7 +527,7 @@ { "label": "C", "location": [ - 53.705597, + 29.0056, -0.864017, 0.0 ] @@ -535,7 +535,7 @@ { "label": "C", "location": [ - 52.204903, + 27.504906, -0.002667, 0.0 ] @@ -543,7 +543,7 @@ { "label": "C", "location": [ - 52.709911, + 28.009914, -0.865684, 0.0 ] @@ -551,7 +551,7 @@ { "label": "C", "location": [ - 52.213234, + 27.513239, -1.733703, 0.0 ] @@ -559,7 +559,7 @@ { "label": "C", "location": [ - 51.20488, + 26.504883, -0.005332, 0.0 ] @@ -567,7 +567,7 @@ { "label": "O", "location": [ - 50.702202, + 26.002205, 0.859018, 0.0 ] @@ -575,7 +575,7 @@ { "label": "O", "location": [ - 50.707199, + 26.007204, -0.873017, 0.0 ] @@ -583,7 +583,7 @@ { "label": "C", "location": [ - 52.207233, + 27.507238, 1.733703, 0.0 ] @@ -675,7 +675,7 @@ { "label": "C", "location": [ - 62.610981, + 34.010983, 0.867686, 0.0 ] @@ -683,7 +683,7 @@ { "label": "C", "location": [ - 64.10968, + 35.509682, 0.003001, 0.0 ] @@ -691,7 +691,7 @@ { "label": "C", "location": [ - 63.611671, + 35.011673, 0.867352, 0.0 ] @@ -699,7 +699,7 @@ { "label": "C", "location": [ - 63.609337, + 35.009338, -0.864017, 0.0 ] @@ -707,7 +707,7 @@ { "label": "C", "location": [ - 62.108643, + 33.508644, -0.002667, 0.0 ] @@ -715,7 +715,7 @@ { "label": "C", "location": [ - 62.613651, + 34.013653, -0.865684, 0.0 ] @@ -723,7 +723,7 @@ { "label": "C", "location": [ - 62.116974, + 33.516975, -1.733703, 0.0 ] @@ -731,7 +731,7 @@ { "label": "C", "location": [ - 61.10862, + 32.508621, -0.005332, 0.0 ] @@ -739,7 +739,7 @@ { "label": "O", "location": [ - 60.605942, + 32.005943, 0.859018, 0.0 ] @@ -747,7 +747,7 @@ { "label": "O", "location": [ - 60.610939, + 32.010941, -0.873017, 0.0 ] @@ -755,7 +755,7 @@ { "label": "C", "location": [ - 62.110973, + 33.510975, 1.733703, 0.0 ] diff --git a/api/tests/integration/tests/basic/ref/crazystereo.ket b/api/tests/integration/tests/basic/ref/crazystereo.ket index 2348165571..8b47404aba 100644 --- a/api/tests/integration/tests/basic/ref/crazystereo.ket +++ b/api/tests/integration/tests/basic/ref/crazystereo.ket @@ -13,12 +13,12 @@ "mode": "open-angle", "pos": [ { - "x": 7.464198, + "x": 4.964199, "y": 0.0, "z": 0.0 }, { - "x": 9.464199, + "x": 5.964199, "y": 0.0, "z": 0.0 } @@ -33,7 +33,7 @@ { "label": "C", "location": [ - 3.032099, + 2.232099, 0.499994, 0.0 ] @@ -41,7 +41,7 @@ { "label": "C", "location": [ - 2.166049, + 1.366049, 0.999987, 0.0 ] @@ -49,7 +49,7 @@ { "label": "C", "location": [ - 1.3, + 0.5, 0.499994, 0.0 ] @@ -57,7 +57,7 @@ { "label": "C", "location": [ - 1.3, + 0.5, -0.499994, 0.0 ] @@ -65,7 +65,7 @@ { "label": "C", "location": [ - 2.166049, + 1.366049, -0.999987, 0.0 ] @@ -73,7 +73,7 @@ { "label": "C", "location": [ - 3.032099, + 2.232099, -0.499994, 0.0 ] @@ -81,7 +81,7 @@ { "label": "C", "location": [ - 3.898028, + 3.098028, -0.999987, 0.0 ] @@ -89,7 +89,7 @@ { "label": "C", "location": [ - 4.764198, + 3.964199, -0.499994, 0.0 ] @@ -97,7 +97,7 @@ { "label": "C", "location": [ - 4.764198, + 3.964199, 0.499994, 0.0 ] @@ -105,7 +105,7 @@ { "label": "C", "location": [ - 3.898028, + 3.098028, 0.999987, 0.0 ] @@ -197,7 +197,7 @@ { "label": "C", "location": [ - 15.628277, + 10.428276, 2.249972, 0.0 ] @@ -205,7 +205,7 @@ { "label": "C", "location": [ - 14.762227, + 9.562226, 1.749978, 0.0 ] @@ -213,7 +213,7 @@ { "label": "C", "location": [ - 14.762227, + 9.562226, 0.74999, 0.0 ], @@ -222,7 +222,7 @@ { "label": "C", "location": [ - 15.628277, + 10.428276, 0.249997, 0.0 ] @@ -230,7 +230,7 @@ { "label": "C", "location": [ - 16.494328, + 11.294327, 0.74999, 0.0 ] @@ -238,7 +238,7 @@ { "label": "C", "location": [ - 16.494328, + 11.294327, 1.749978, 0.0 ] @@ -246,7 +246,7 @@ { "label": "C", "location": [ - 13.896298, + 8.696299, 0.249997, 0.0 ], @@ -255,7 +255,7 @@ { "label": "C", "location": [ - 13.030249, + 7.830248, 0.74999, 0.0 ] @@ -263,7 +263,7 @@ { "label": "C", "location": [ - 12.164199, + 6.964199, 0.249997, 0.0 ] @@ -271,7 +271,7 @@ { "label": "C", "location": [ - 12.164199, + 6.964199, -0.749991, 0.0 ] @@ -279,7 +279,7 @@ { "label": "C", "location": [ - 13.030249, + 7.830248, -1.249985, 0.0 ] @@ -287,7 +287,7 @@ { "label": "C", "location": [ - 13.896298, + 8.696299, -0.749991, 0.0 ] @@ -295,7 +295,7 @@ { "label": "P", "location": [ - 14.762227, + 9.562226, -1.249985, 0.0 ] @@ -303,7 +303,7 @@ { "label": "C", "location": [ - 15.762215, + 10.562214, -1.249985, 0.0 ] @@ -311,7 +311,7 @@ { "label": "C", "location": [ - 14.762227, + 9.562226, -2.249972, 0.0 ] diff --git a/api/tests/integration/tests/formats/ref/2485-bad-layout.ket b/api/tests/integration/tests/formats/ref/2485-bad-layout.ket index 5573730d10..8631f831dc 100644 --- a/api/tests/integration/tests/formats/ref/2485-bad-layout.ket +++ b/api/tests/integration/tests/formats/ref/2485-bad-layout.ket @@ -13,7 +13,7 @@ { "type": "plus", "location": [ - 6.119407176971436, + 3.369406700134278, 0.0, 0.0 ] @@ -24,12 +24,12 @@ "mode": "open-angle", "pos": [ { - "x": 13.749715805053713, + "x": 7.349715232849121, "y": 0.0, "z": 0.0 }, { - "x": 15.749714851379397, + "x": 8.349715232849121, "y": 0.0, "z": 0.0 } @@ -44,7 +44,7 @@ { "label": "C", "location": [ - 2.109703540802002, + 1.3097034692764285, 0.7700533270835877, 0.0 ] @@ -52,7 +52,7 @@ { "label": "C", "location": [ - 2.6101059913635256, + 1.8101061582565308, -0.7700533270835877, 0.0 ] @@ -60,7 +60,7 @@ { "label": "C", "location": [ - 2.9194068908691408, + 2.119406938552857, 0.1761501431465149, 0.0 ] @@ -68,7 +68,7 @@ { "label": "C", "location": [ - 1.609302639961243, + 0.8093026876449585, -0.7700533270835877, 0.0 ] @@ -76,7 +76,7 @@ { "label": "C", "location": [ - 1.2999999523162842, + 0.5, 0.1761501431465149, 0.0 ] @@ -126,7 +126,7 @@ { "label": "C", "location": [ - 9.31940746307373, + 4.619406700134277, 0.49990296363830569, 0.0 ] @@ -134,7 +134,7 @@ { "label": "C", "location": [ - 11.049715995788576, + 6.349715232849121, 0.5004026889801025, 0.0 ] @@ -142,7 +142,7 @@ { "label": "C", "location": [ - 10.186211585998536, + 5.486210823059082, 1.000004291534424, 0.0 ] @@ -150,7 +150,7 @@ { "label": "C", "location": [ - 11.049715995788576, + 6.349715232849121, -0.5005018711090088, 0.0 ] @@ -158,7 +158,7 @@ { "label": "C", "location": [ - 9.31940746307373, + 4.619406700134277, -0.5050013065338135, 0.0 ] @@ -166,7 +166,7 @@ { "label": "C", "location": [ - 10.188410758972168, + 5.488409996032715, -1.000004291534424, 0.0 ] @@ -223,7 +223,7 @@ { "label": "C", "location": [ - 19.15681838989258, + 10.056818008422852, -0.9659045934677124, 0.0 ] @@ -231,7 +231,7 @@ { "label": "C", "location": [ - 18.44971466064453, + 9.34971523284912, -0.2588016390800476, 0.0 ] @@ -239,7 +239,7 @@ { "label": "C", "location": [ - 18.708515167236329, + 9.608514785766602, 0.70710289478302, 0.0 ] @@ -247,7 +247,7 @@ { "label": "C", "location": [ - 19.67452049255371, + 10.574520111083985, 0.9659045934677124, 0.0 ] @@ -255,7 +255,7 @@ { "label": "C", "location": [ - 20.38162231445313, + 11.281623840332032, 0.25880157947540285, 0.0 ] @@ -263,7 +263,7 @@ { "label": "C", "location": [ - 20.12272071838379, + 11.022720336914065, -0.7071030139923096, 0.0 ] diff --git a/api/tests/integration/tests/formats/ref/2531-bad-layout.ket b/api/tests/integration/tests/formats/ref/2531-bad-layout.ket index e188388755..295cfca82b 100644 --- a/api/tests/integration/tests/formats/ref/2531-bad-layout.ket +++ b/api/tests/integration/tests/formats/ref/2531-bad-layout.ket @@ -13,12 +13,12 @@ "mode": "open-angle", "pos": [ { - "x": 15.73809814453125, + "x": 13.23809814453125, "y": 0.0, "z": 0.0 }, { - "x": 17.73809814453125, + "x": 14.23809814453125, "y": 0.0, "z": 0.0 } @@ -33,7 +33,7 @@ { "label": "C", "location": [ - 8.214375495910645, + 7.414375305175781, -2.507263660430908, 0.0 ] @@ -41,7 +41,7 @@ { "label": "C", "location": [ - 9.08179759979248, + 8.281797409057618, -2.0096511840820314, 0.0 ] @@ -49,7 +49,7 @@ { "label": "C", "location": [ - 9.946419715881348, + 9.146419525146485, -2.512063980102539, 0.0 ] @@ -57,7 +57,7 @@ { "label": "N", "location": [ - 9.08459758758545, + 8.284597396850586, -1.009625792503357, 0.0 ] @@ -65,7 +65,7 @@ { "label": "C", "location": [ - 8.219975471496582, + 7.419975280761719, -0.5072128772735596, 0.0 ] @@ -73,7 +73,7 @@ { "label": "C", "location": [ - 7.352553367614746, + 6.552553176879883, -1.0048257112503052, 0.0 ] @@ -81,7 +81,7 @@ { "label": "O", "location": [ - 7.349753379821777, + 6.549753189086914, -2.004850864410401, 0.0 ] @@ -89,7 +89,7 @@ { "label": "C", "location": [ - 6.487931251525879, + 5.687931537628174, -0.5024127960205078, 0.0 ] @@ -97,7 +97,7 @@ { "label": "O", "location": [ - 5.620309829711914, + 4.820309638977051, -1.000025510787964, 0.0 ] @@ -105,7 +105,7 @@ { "label": "C", "location": [ - 4.755887985229492, + 3.955887794494629, -0.49761271476745608, 0.0 ] @@ -113,7 +113,7 @@ { "label": "C", "location": [ - 4.758487701416016, + 3.958487510681153, 0.5024125576019287, 0.0 ] @@ -121,7 +121,7 @@ { "label": "C", "location": [ - 3.89386534690857, + 3.093865394592285, 1.0048253536224366, 0.0 ] @@ -129,7 +129,7 @@ { "label": "C", "location": [ - 3.0264432430267336, + 2.226443290710449, 0.5072128772735596, 0.0 ] @@ -137,7 +137,7 @@ { "label": "C", "location": [ - 2.1618220806121828, + 1.3618221282958985, 1.0096254348754886, 0.0 ] @@ -145,7 +145,7 @@ { "label": "C", "location": [ - 2.164622068405152, + 1.3646221160888672, 2.009650707244873, 0.0 ] @@ -153,7 +153,7 @@ { "label": "N", "location": [ - 1.2999999523162842, + 0.5, 2.512063980102539, 0.0 ] @@ -161,7 +161,7 @@ { "label": "O", "location": [ - 3.03204345703125, + 2.2320432662963869, 2.507263660430908, 0.0 ] @@ -169,7 +169,7 @@ { "label": "C", "location": [ - 3.023843288421631, + 2.223843574523926, -0.4928126335144043, 0.0 ] @@ -177,7 +177,7 @@ { "label": "C", "location": [ - 3.888265371322632, + 3.088265419006348, -0.995225429534912, 0.0 ] @@ -185,7 +185,7 @@ { "label": "C", "location": [ - 9.952219009399414, + 9.15221881866455, -0.5120131969451904, 0.0 ] @@ -193,7 +193,7 @@ { "label": "N", "location": [ - 10.864442825317385, + 10.06444263458252, -0.9216235876083374, 0.0 ] @@ -201,7 +201,7 @@ { "label": "C", "location": [ - 11.535659790039065, + 10.7356595993042, -0.1802048683166504, 0.0 ] @@ -209,7 +209,7 @@ { "label": "C", "location": [ - 12.53548526763916, + 11.735485076904297, -0.18280482292175297, 0.0 ] @@ -217,7 +217,7 @@ { "label": "C", "location": [ - 13.038098335266114, + 12.23809814453125, 0.681617259979248, 0.0 ] @@ -225,7 +225,7 @@ { "label": "C", "location": [ - 12.54048538208008, + 11.740485191345217, 1.549239158630371, 0.0 ] @@ -233,7 +233,7 @@ { "label": "C", "location": [ - 11.540460586547852, + 10.740460395812989, 1.5518388748168946, 0.0 ] @@ -241,7 +241,7 @@ { "label": "C", "location": [ - 11.038046836853028, + 10.238046646118164, 0.6872174739837647, 0.0 ] @@ -249,7 +249,7 @@ { "label": "O", "location": [ - 10.059222221374512, + 9.259222030639649, 0.4822120666503906, 0.0 ] @@ -474,7 +474,7 @@ { "label": "C", "location": [ - 20.438098907470704, + 15.23809814453125, 0.5055128335952759, 0.0 ] @@ -482,7 +482,7 @@ { "label": "C", "location": [ - 21.303720474243165, + 16.10371971130371, 0.004900097846984863, 0.0 ] @@ -490,7 +490,7 @@ { "label": "C", "location": [ - 21.302921295166017, + 16.102920532226564, -0.9951252937316896, 0.0 ] @@ -498,7 +498,7 @@ { "label": "N", "location": [ - 22.170143127441408, + 16.970142364501954, 0.5041128396987915, 0.0 ] @@ -506,7 +506,7 @@ { "label": "C", "location": [ - 23.035764694213868, + 17.835763931274419, 0.0035001039505004884, 0.0 ] @@ -514,7 +514,7 @@ { "label": "C", "location": [ - 23.90218734741211, + 18.702186584472658, 0.5027128458023071, 0.0 ] @@ -522,7 +522,7 @@ { "label": "O", "location": [ - 23.90298652648926, + 18.70298576354981, 1.502738118171692, 0.0 ] @@ -530,7 +530,7 @@ { "label": "C", "location": [ - 24.76780891418457, + 19.56780815124512, 0.0021001100540161139, 0.0 ] @@ -538,7 +538,7 @@ { "label": "O", "location": [ - 25.634231567382817, + 20.43423080444336, 0.5013126134872437, 0.0 ] @@ -546,7 +546,7 @@ { "label": "C", "location": [ - 26.499853134155278, + 21.29985237121582, 0.0006999969482421875, 0.0 ] @@ -554,7 +554,7 @@ { "label": "C", "location": [ - 26.49905395507813, + 21.299053192138673, -0.999325394630432, 0.0 ] @@ -562,7 +562,7 @@ { "label": "C", "location": [ - 27.36467552185059, + 22.164674758911138, -1.4999380111694337, 0.0 ] @@ -570,7 +570,7 @@ { "label": "C", "location": [ - 28.231096267700197, + 23.031095504760747, -1.0007253885269166, 0.0 ] @@ -578,7 +578,7 @@ { "label": "C", "location": [ - 29.096717834472658, + 23.896717071533204, -1.5013381242752076, 0.0 ] @@ -586,7 +586,7 @@ { "label": "C", "location": [ - 29.96314239501953, + 24.76314163208008, -1.0021255016326905, 0.0 ] @@ -594,7 +594,7 @@ { "label": "N", "location": [ - 30.82876205444336, + 25.628761291503908, -1.502738118171692, 0.0 ] @@ -602,7 +602,7 @@ { "label": "O", "location": [ - 29.96394157409668, + 24.763940811157228, -0.002099990844726563, 0.0 ] @@ -610,7 +610,7 @@ { "label": "C", "location": [ - 28.231897354125978, + 23.031896591186525, -0.0006999969482421875, 0.0 ] @@ -618,7 +618,7 @@ { "label": "C", "location": [ - 27.366275787353517, + 22.166275024414064, 0.4999126195907593, 0.0 ] diff --git a/api/tests/integration/tests/formats/ref/all_aminoacids.ket b/api/tests/integration/tests/formats/ref/all_aminoacids.ket index 3fc9cc2bf3..ded36163e5 100644 --- a/api/tests/integration/tests/formats/ref/all_aminoacids.ket +++ b/api/tests/integration/tests/formats/ref/all_aminoacids.ket @@ -383,7 +383,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "C", @@ -394,7 +394,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "D", @@ -405,7 +405,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "E", @@ -416,7 +416,7 @@ "id": "4", "seqid": 5, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "F", @@ -427,7 +427,7 @@ "id": "5", "seqid": 6, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "G", @@ -438,7 +438,7 @@ "id": "6", "seqid": 7, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "H", @@ -449,7 +449,7 @@ "id": "7", "seqid": 8, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "I", @@ -460,7 +460,7 @@ "id": "8", "seqid": 9, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "K", @@ -471,7 +471,7 @@ "id": "9", "seqid": 10, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "L", @@ -482,7 +482,7 @@ "id": "10", "seqid": 11, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "M", @@ -493,7 +493,7 @@ "id": "11", "seqid": 12, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "N", @@ -504,7 +504,7 @@ "id": "12", "seqid": 13, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "O", @@ -515,7 +515,7 @@ "id": "13", "seqid": 14, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "P", @@ -526,7 +526,7 @@ "id": "14", "seqid": 15, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "Q", @@ -537,7 +537,7 @@ "id": "15", "seqid": 16, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "R", @@ -548,7 +548,7 @@ "id": "16", "seqid": 17, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "S", @@ -559,7 +559,7 @@ "id": "17", "seqid": 18, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "R", @@ -570,7 +570,7 @@ "id": "18", "seqid": 19, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "U", @@ -581,7 +581,7 @@ "id": "19", "seqid": 20, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "V", @@ -592,7 +592,7 @@ "id": "20", "seqid": 21, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "W", @@ -603,7 +603,7 @@ "id": "21", "seqid": 22, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "Y", diff --git a/api/tests/integration/tests/formats/ref/aminoacids_variants.ket b/api/tests/integration/tests/formats/ref/aminoacids_variants.ket index 775c341e81..42fd8cf1a5 100644 --- a/api/tests/integration/tests/formats/ref/aminoacids_variants.ket +++ b/api/tests/integration/tests/formats/ref/aminoacids_variants.ket @@ -145,7 +145,7 @@ "type": "ambiguousMonomer", "id": "1", "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "seqid": 2, @@ -156,7 +156,7 @@ "type": "ambiguousMonomer", "id": "2", "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "seqid": 3, @@ -167,7 +167,7 @@ "type": "ambiguousMonomer", "id": "3", "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "seqid": 4, diff --git a/api/tests/integration/tests/formats/ref/break_peptide.ket b/api/tests/integration/tests/formats/ref/break_peptide.ket index dbf7d4d47f..fb993d052c 100644 --- a/api/tests/integration/tests/formats/ref/break_peptide.ket +++ b/api/tests/integration/tests/formats/ref/break_peptide.ket @@ -4961,7 +4961,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "D", @@ -4972,7 +4972,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "D", @@ -4983,7 +4983,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "Q", @@ -4994,7 +4994,7 @@ "id": "4", "seqid": 5, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "S", @@ -5005,7 +5005,7 @@ "id": "5", "seqid": 6, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -5016,7 +5016,7 @@ "id": "6", "seqid": 7, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "A", @@ -5027,7 +5027,7 @@ "id": "7", "seqid": 8, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "E", @@ -5038,7 +5038,7 @@ "id": "8", "seqid": 9, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "K", @@ -5049,7 +5049,7 @@ "id": "9", "seqid": 10, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "K", @@ -5060,7 +5060,7 @@ "id": "10", "seqid": 11, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "G", @@ -5071,7 +5071,7 @@ "id": "11", "seqid": 12, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "L", @@ -5082,7 +5082,7 @@ "id": "12", "seqid": 13, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "R", @@ -5093,7 +5093,7 @@ "id": "13", "seqid": 14, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "C", @@ -5104,7 +5104,7 @@ "id": "14", "seqid": 15, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "Q", @@ -5115,7 +5115,7 @@ "id": "15", "seqid": 16, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "N", @@ -5126,7 +5126,7 @@ "id": "16", "seqid": 17, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "P", @@ -5137,7 +5137,7 @@ "id": "17", "seqid": 18, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "A", @@ -5148,7 +5148,7 @@ "id": "18", "seqid": 19, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "C", @@ -5159,7 +5159,7 @@ "id": "19", "seqid": 20, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "M", @@ -5170,7 +5170,7 @@ "id": "20", "seqid": 21, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "D", @@ -5181,7 +5181,7 @@ "id": "21", "seqid": 22, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "K", @@ -5192,7 +5192,7 @@ "id": "22", "seqid": 23, "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "alias": "G", @@ -5203,7 +5203,7 @@ "id": "23", "seqid": 24, "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "alias": "R", @@ -5214,7 +5214,7 @@ "id": "24", "seqid": 25, "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "alias": "A", @@ -5225,7 +5225,7 @@ "id": "25", "seqid": 26, "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "alias": "A", @@ -5236,7 +5236,7 @@ "id": "26", "seqid": 27, "position": { - "x": 26.000000, + "x": 39.000000, "y": -0.000000 }, "alias": "K", @@ -5247,7 +5247,7 @@ "id": "27", "seqid": 28, "position": { - "x": 27.000000, + "x": 40.500000, "y": -0.000000 }, "alias": "V", @@ -5258,7 +5258,7 @@ "id": "28", "seqid": 29, "position": { - "x": 28.000000, + "x": 42.000000, "y": -0.000000 }, "alias": "C", @@ -5269,7 +5269,7 @@ "id": "29", "seqid": 30, "position": { - "x": 29.000000, + "x": 43.500000, "y": -0.000000 }, "alias": "H", @@ -5280,7 +5280,7 @@ "id": "30", "seqid": 31, "position": { - "x": 30.000000, + "x": 45.000000, "y": -0.000000 }, "alias": "H", @@ -5291,7 +5291,7 @@ "id": "31", "seqid": 32, "position": { - "x": 31.000000, + "x": 46.500000, "y": -0.000000 }, "alias": "A", @@ -5302,7 +5302,7 @@ "id": "32", "seqid": 33, "position": { - "x": 32.000000, + "x": 48.000000, "y": -0.000000 }, "alias": "D", @@ -5313,7 +5313,7 @@ "id": "33", "seqid": 34, "position": { - "x": 33.000000, + "x": 49.500000, "y": -0.000000 }, "alias": "C", @@ -5324,7 +5324,7 @@ "id": "34", "seqid": 35, "position": { - "x": 34.000000, + "x": 51.000000, "y": -0.000000 }, "alias": "Q", @@ -5335,7 +5335,7 @@ "id": "35", "seqid": 36, "position": { - "x": 35.000000, + "x": 52.500000, "y": -0.000000 }, "alias": "Q", @@ -5346,7 +5346,7 @@ "id": "36", "seqid": 37, "position": { - "x": 36.000000, + "x": 54.000000, "y": -0.000000 }, "alias": "L", @@ -5357,7 +5357,7 @@ "id": "37", "seqid": 38, "position": { - "x": 37.000000, + "x": 55.500000, "y": -0.000000 }, "alias": "H", @@ -5368,7 +5368,7 @@ "id": "38", "seqid": 39, "position": { - "x": 38.000000, + "x": 57.000000, "y": -0.000000 }, "alias": "R", @@ 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"y": -0.000000 }, "alias": "E", @@ -5467,7 +5467,7 @@ "id": "47", "seqid": 48, "position": { - "x": 47.000000, + "x": 70.500000, "y": -0.000000 }, "alias": "A", @@ -5478,7 +5478,7 @@ "id": "48", "seqid": 49, "position": { - "x": 48.000000, + "x": 72.000000, "y": -0.000000 }, "alias": "C", @@ -5489,7 +5489,7 @@ "id": "49", "seqid": 50, "position": { - "x": 49.000000, + "x": 73.500000, "y": -0.000000 }, "alias": "D", @@ -5500,7 +5500,7 @@ "id": "50", "seqid": 51, "position": { - "x": 50.000000, + "x": 75.000000, "y": -0.000000 }, "alias": "S", @@ -5511,7 +5511,7 @@ "id": "51", "seqid": 52, "position": { - "x": 51.000000, + "x": 76.500000, "y": -0.000000 }, "alias": "K", @@ -5522,7 +5522,7 @@ "id": "52", "seqid": 53, "position": { - "x": 52.000000, + "x": 78.000000, "y": -0.000000 }, "alias": "F", @@ -5533,7 +5533,7 @@ "id": "53", "seqid": 54, "position": { - "x": 53.000000, + "x": 79.500000, "y": -0.000000 }, "alias": "H", @@ -5544,7 +5544,7 @@ "id": "54", "seqid": 55, "position": { - 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"alias": "Q", @@ -5720,7 +5720,7 @@ "id": "70", "seqid": 71, "position": { - "x": 70.000000, + "x": 105.000000, "y": -0.000000 }, "alias": "G", @@ -5731,7 +5731,7 @@ "id": "71", "seqid": 72, "position": { - "x": 71.000000, + "x": 106.500000, "y": -0.000000 }, "alias": "S", @@ -5742,7 +5742,7 @@ "id": "72", "seqid": 73, "position": { - "x": 72.000000, + "x": 108.000000, "y": -0.000000 }, "alias": "V", @@ -5753,7 +5753,7 @@ "id": "73", "seqid": 74, "position": { - "x": 73.000000, + "x": 109.500000, "y": -0.000000 }, "alias": "L", @@ -5764,7 +5764,7 @@ "id": "74", "seqid": 75, "position": { - "x": 74.000000, + "x": 111.000000, "y": -0.000000 }, "alias": "A", @@ -5775,7 +5775,7 @@ "id": "75", "seqid": 76, "position": { - "x": 75.000000, + "x": 112.500000, "y": -0.000000 }, "alias": "R", @@ -5786,7 +5786,7 @@ "id": "76", "seqid": 77, "position": { - "x": 76.000000, + "x": 114.000000, "y": -0.000000 }, "alias": "N", @@ -5797,7 +5797,7 @@ "id": "77", "seqid": 78, "position": { - "x": 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"alias": "L", @@ -5973,7 +5973,7 @@ "id": "93", "seqid": 94, "position": { - "x": 93.000000, + "x": 139.500000, "y": -0.000000 }, "alias": "E", @@ -5984,7 +5984,7 @@ "id": "94", "seqid": 95, "position": { - "x": 94.000000, + "x": 141.000000, "y": -0.000000 }, "alias": "E", @@ -5995,7 +5995,7 @@ "id": "95", "seqid": 96, "position": { - "x": 95.000000, + "x": 142.500000, "y": -0.000000 }, "alias": "E", @@ -6006,7 +6006,7 @@ "id": "96", "seqid": 97, "position": { - "x": 96.000000, + "x": 144.000000, "y": -0.000000 }, "alias": "E", @@ -6017,7 +6017,7 @@ "id": "97", "seqid": 98, "position": { - "x": 97.000000, + "x": 145.500000, "y": -0.000000 }, "alias": "E", @@ -6028,7 +6028,7 @@ "id": "98", "seqid": 99, "position": { - "x": 98.000000, + "x": 147.000000, "y": -0.000000 }, "alias": "E", @@ -6039,7 +6039,7 @@ "id": "99", "seqid": 100, "position": { - "x": 99.000000, + "x": 148.500000, "y": -0.000000 }, "alias": "S", @@ -6050,7 +6050,7 @@ "id": "100", "seqid": 101, "position": { - "x": 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145.000000, + "x": 217.500000, "y": -0.000000 }, "alias": "E", @@ -6556,7 +6556,7 @@ "id": "146", "seqid": 147, "position": { - "x": 146.000000, + "x": 219.000000, "y": -0.000000 }, "alias": "I", @@ -6567,7 +6567,7 @@ "id": "147", "seqid": 148, "position": { - "x": 147.000000, + "x": 220.500000, "y": -0.000000 }, "alias": "V", @@ -6578,7 +6578,7 @@ "id": "148", "seqid": 149, "position": { - "x": 148.000000, + "x": 222.000000, "y": -0.000000 }, "alias": "P", @@ -6589,7 +6589,7 @@ "id": "149", "seqid": 150, "position": { - "x": 149.000000, + "x": 223.500000, "y": -0.000000 }, "alias": "A", @@ -6600,7 +6600,7 @@ "id": "150", "seqid": 151, "position": { - "x": 150.000000, + "x": 225.000000, "y": -0.000000 }, "alias": "M", @@ -6611,7 +6611,7 @@ "id": "151", "seqid": 152, "position": { - "x": 151.000000, + "x": 226.500000, "y": -0.000000 }, "alias": "K", @@ -6622,7 +6622,7 @@ "id": "152", "seqid": 153, "position": { - "x": 152.000000, + "x": 228.000000, "y": -0.000000 }, "alias": "K", @@ 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160.000000, + "x": 240.000000, "y": -0.000000 }, "alias": "L", @@ -6721,7 +6721,7 @@ "id": "161", "seqid": 162, "position": { - "x": 161.000000, + "x": 241.500000, "y": -0.000000 }, "alias": "P", @@ -6732,7 +6732,7 @@ "id": "162", "seqid": 163, "position": { - "x": 162.000000, + "x": 243.000000, "y": -0.000000 }, "alias": "V", @@ -6743,7 +6743,7 @@ "id": "163", "seqid": 164, "position": { - "x": 163.000000, + "x": 244.500000, "y": -0.000000 }, "alias": "F", @@ -6754,7 +6754,7 @@ "id": "164", "seqid": 165, "position": { - "x": 164.000000, + "x": 246.000000, "y": -0.000000 }, "alias": "E", @@ -6765,7 +6765,7 @@ "id": "165", "seqid": 166, "position": { - "x": 165.000000, + "x": 247.500000, "y": -0.000000 }, "alias": "R", @@ -6776,7 +6776,7 @@ "id": "166", "seqid": 167, "position": { - "x": 166.000000, + "x": 249.000000, "y": -0.000000 }, "alias": "K", @@ -6787,7 +6787,7 @@ "id": "167", "seqid": 168, "position": { - "x": 167.000000, + "x": 250.500000, "y": -0.000000 }, "alias": "G", @@ -6798,7 +6798,7 @@ "id": "168", "seqid": 169, "position": { - "x": 168.000000, + "x": 252.000000, "y": -0.000000 }, "alias": "I", @@ -6809,7 +6809,7 @@ "id": "169", "seqid": 170, "position": { - "x": 169.000000, + "x": 253.500000, "y": -0.000000 }, "alias": "A", @@ -6820,7 +6820,7 @@ "id": "170", "seqid": 171, "position": { - "x": 170.000000, + "x": 255.000000, "y": -0.000000 }, "alias": "L", @@ -6831,7 +6831,7 @@ "id": "171", "seqid": 172, "position": { - "x": 171.000000, + "x": 256.500000, "y": -0.000000 }, "alias": "G", @@ -6842,7 +6842,7 @@ "id": "172", "seqid": 173, "position": { - "x": 172.000000, + "x": 258.000000, "y": -0.000000 }, "alias": "K", @@ -6853,7 +6853,7 @@ "id": "173", "seqid": 174, "position": { - "x": 173.000000, + "x": 259.500000, "y": -0.000000 }, "alias": "V", @@ -6864,7 +6864,7 @@ "id": "174", "seqid": 175, "position": { - "x": 174.000000, + "x": 261.000000, "y": -0.000000 }, "alias": "D", @@ -6875,7 +6875,7 @@ "id": "175", "seqid": 176, "position": { - "x": 175.000000, + "x": 262.500000, "y": -0.000000 }, "alias": "I", @@ -6886,7 +6886,7 @@ "id": "176", "seqid": 177, "position": { - "x": 176.000000, + "x": 264.000000, "y": -0.000000 }, "alias": "Y", @@ -6897,7 +6897,7 @@ "id": "177", "seqid": 178, "position": { - "x": 177.000000, + "x": 265.500000, "y": -0.000000 }, "alias": "L", @@ -6908,7 +6908,7 @@ "id": "178", "seqid": 179, "position": { - "x": 178.000000, + "x": 267.000000, "y": -0.000000 }, "alias": "D", @@ -6919,7 +6919,7 @@ "id": "179", "seqid": 180, "position": { - "x": 179.000000, + "x": 268.500000, "y": -0.000000 }, "alias": "Q", @@ -6930,7 +6930,7 @@ "id": "180", "seqid": 181, "position": { - "x": 180.000000, + "x": 270.000000, "y": -0.000000 }, "alias": "S", @@ -6941,7 +6941,7 @@ "id": "181", "seqid": 182, "position": { - "x": 181.000000, + "x": 271.500000, "y": -0.000000 }, "alias": "N", @@ -6952,7 +6952,7 @@ "id": "182", "seqid": 183, "position": { - "x": 182.000000, + "x": 273.000000, "y": -0.000000 }, "alias": "T", @@ -6964,7 +6964,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -6974,8 +6974,8 @@ "id": "184", "seqid": 2, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -6985,8 +6985,8 @@ "id": "185", "seqid": 3, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -6996,8 +6996,8 @@ "id": "186", "seqid": 4, "position": { - "x": 3.000000, - "y": -1.000000 + "x": 4.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7007,8 +7007,8 @@ "id": "187", "seqid": 5, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -7018,8 +7018,8 @@ "id": "188", "seqid": 6, "position": { - "x": 5.000000, - "y": -1.000000 + "x": 7.500000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -7029,8 +7029,8 @@ "id": "189", "seqid": 7, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7040,8 +7040,8 @@ "id": "190", "seqid": 8, "position": { - "x": 7.000000, - "y": -1.000000 + "x": 10.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7051,8 +7051,8 @@ "id": "191", "seqid": 9, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "Y", "templateId": "Y___Tyrosine" @@ -7062,8 +7062,8 @@ "id": "192", "seqid": 10, "position": { - "x": 9.000000, - "y": -1.000000 + "x": 13.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7073,8 +7073,8 @@ "id": "193", "seqid": 11, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -7084,8 +7084,8 @@ "id": "194", "seqid": 12, "position": { - "x": 11.000000, - "y": -1.000000 + "x": 16.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7095,8 +7095,8 @@ "id": "195", "seqid": 13, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7106,8 +7106,8 @@ "id": "196", "seqid": 14, "position": { - "x": 13.000000, - "y": -1.000000 + "x": 19.500000, + "y": -1.500000 }, "alias": "H", "templateId": "H___Histidine" @@ -7117,8 +7117,8 @@ "id": "197", "seqid": 15, "position": { - "x": 14.000000, - "y": -1.000000 + "x": 21.000000, + "y": -1.500000 }, "alias": "Y", "templateId": "Y___Tyrosine" @@ -7128,8 +7128,8 @@ "id": "198", "seqid": 16, "position": { - "x": 15.000000, - "y": -1.000000 + "x": 22.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7139,8 +7139,8 @@ "id": "199", "seqid": 17, "position": { - "x": 16.000000, - "y": -1.000000 + "x": 24.000000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7150,8 +7150,8 @@ "id": "200", "seqid": 18, "position": { - "x": 17.000000, - "y": -1.000000 + "x": 25.500000, + "y": -1.500000 }, "alias": "V", "templateId": "V___Valine" @@ -7161,8 +7161,8 @@ "id": "201", "seqid": 19, "position": { - "x": 18.000000, - "y": -1.000000 + "x": 27.000000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -7172,8 +7172,8 @@ "id": "202", "seqid": 20, "position": { - "x": 19.000000, - "y": -1.000000 + "x": 28.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7183,8 +7183,8 @@ "id": "203", "seqid": 21, "position": { - "x": 20.000000, - "y": -1.000000 + "x": 30.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7194,8 +7194,8 @@ "id": "204", "seqid": 22, "position": { - "x": 21.000000, - "y": -1.000000 + "x": 31.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7205,8 +7205,8 @@ "id": "205", "seqid": 23, "position": { - "x": 22.000000, - "y": -1.000000 + "x": 33.000000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -7216,8 +7216,8 @@ "id": "206", "seqid": 24, "position": { - "x": 23.000000, - "y": -1.000000 + "x": 34.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7227,8 +7227,8 @@ "id": "207", "seqid": 25, "position": { - "x": 24.000000, - "y": -1.000000 + "x": 36.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7238,8 +7238,8 @@ "id": "208", "seqid": 26, "position": { - "x": 25.000000, - "y": -1.000000 + "x": 37.500000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -7249,8 +7249,8 @@ "id": "209", "seqid": 27, "position": { - "x": 26.000000, - "y": -1.000000 + "x": 39.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7260,8 +7260,8 @@ "id": "210", "seqid": 28, "position": { - "x": 27.000000, - "y": -1.000000 + "x": 40.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7271,8 +7271,8 @@ "id": "211", "seqid": 29, "position": { - "x": 28.000000, - "y": -1.000000 + "x": 42.000000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -7282,8 +7282,8 @@ "id": "212", "seqid": 30, "position": { - "x": 29.000000, - "y": -1.000000 + "x": 43.500000, + "y": -1.500000 }, "alias": "V", "templateId": "V___Valine" @@ -7293,8 +7293,8 @@ "id": "213", "seqid": 31, "position": { - "x": 30.000000, - "y": -1.000000 + "x": 45.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7304,8 +7304,8 @@ "id": "214", "seqid": 32, "position": { - "x": 31.000000, - "y": -1.000000 + "x": 46.500000, + "y": -1.500000 }, "alias": "Q", "templateId": "Q___Glutamine" @@ -7315,8 +7315,8 @@ "id": "215", "seqid": 33, "position": { - "x": 32.000000, - "y": -1.000000 + "x": 48.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7326,8 +7326,8 @@ "id": "216", "seqid": 34, "position": { - "x": 33.000000, - "y": -1.000000 + "x": 49.500000, + "y": -1.500000 }, "alias": "M", "templateId": "M___Methionine" @@ -7337,8 +7337,8 @@ "id": "217", "seqid": 35, "position": { - "x": 34.000000, - "y": -1.000000 + "x": 51.000000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -7348,8 +7348,8 @@ "id": "218", "seqid": 36, "position": { - "x": 35.000000, - "y": -1.000000 + "x": 52.500000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -7359,8 +7359,8 @@ "id": "219", "seqid": 37, "position": { - "x": 36.000000, - "y": -1.000000 + "x": 54.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7370,8 +7370,8 @@ "id": "220", "seqid": 38, "position": { - "x": 37.000000, - "y": -1.000000 + "x": 55.500000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -7381,8 +7381,8 @@ "id": "221", "seqid": 39, "position": { - "x": 38.000000, - "y": -1.000000 + "x": 57.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7392,8 +7392,8 @@ "id": "222", "seqid": 40, "position": { - "x": 39.000000, - "y": -1.000000 + "x": 58.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7403,8 +7403,8 @@ "id": "223", "seqid": 41, "position": { - "x": 40.000000, - "y": -1.000000 + "x": 60.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7414,8 +7414,8 @@ "id": "224", "seqid": 42, "position": { - "x": 41.000000, - "y": -1.000000 + "x": 61.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7425,8 +7425,8 @@ "id": "225", "seqid": 43, "position": { - "x": 42.000000, - "y": -1.000000 + "x": 63.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7436,8 +7436,8 @@ "id": "226", "seqid": 44, "position": { - "x": 43.000000, - "y": -1.000000 + "x": 64.500000, + "y": -1.500000 }, "alias": "I", "templateId": "I___Isoleucine" @@ -7447,8 +7447,8 @@ "id": "227", "seqid": 45, "position": { - "x": 44.000000, - "y": -1.000000 + "x": 66.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7458,8 +7458,8 @@ "id": "228", "seqid": 46, "position": { - "x": 45.000000, - "y": -1.000000 + "x": 67.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7469,8 +7469,8 @@ "id": "229", "seqid": 47, "position": { - "x": 46.000000, - "y": -1.000000 + "x": 69.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7480,8 +7480,8 @@ "id": "230", "seqid": 48, "position": { - "x": 47.000000, - "y": -1.000000 + "x": 70.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7491,8 +7491,8 @@ "id": "231", "seqid": 49, "position": { - "x": 48.000000, - "y": -1.000000 + "x": 72.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7502,8 +7502,8 @@ "id": "232", "seqid": 50, "position": { - "x": 49.000000, - "y": -1.000000 + "x": 73.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -7513,8 +7513,8 @@ "id": "233", "seqid": 51, "position": { - "x": 50.000000, - "y": -1.000000 + "x": 75.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7524,8 +7524,8 @@ "id": "234", "seqid": 52, "position": { - "x": 51.000000, - "y": -1.000000 + "x": 76.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7535,8 +7535,8 @@ "id": "235", "seqid": 53, "position": { - "x": 52.000000, - "y": -1.000000 + "x": 78.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7546,8 +7546,8 @@ "id": "236", "seqid": 54, "position": { - "x": 53.000000, - "y": -1.000000 + "x": 79.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7557,8 +7557,8 @@ "id": "237", "seqid": 55, "position": { - "x": 54.000000, - "y": -1.000000 + "x": 81.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7568,8 +7568,8 @@ "id": "238", "seqid": 56, "position": { - "x": 55.000000, - "y": -1.000000 + "x": 82.500000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7579,8 +7579,8 @@ "id": "239", "seqid": 57, "position": { - "x": 56.000000, - "y": -1.000000 + "x": 84.000000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7590,8 +7590,8 @@ "id": "240", "seqid": 58, "position": { - "x": 57.000000, - "y": -1.000000 + "x": 85.500000, + "y": -1.500000 }, "alias": "V", "templateId": "V___Valine" @@ -7601,8 +7601,8 @@ "id": "241", "seqid": 59, "position": { - "x": 58.000000, - "y": -1.000000 + "x": 87.000000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -7612,8 +7612,8 @@ "id": "242", "seqid": 60, "position": { - "x": 59.000000, - "y": -1.000000 + "x": 88.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7623,8 +7623,8 @@ "id": "243", "seqid": 61, "position": { - "x": 60.000000, - "y": -1.000000 + "x": 90.000000, + "y": -1.500000 }, "alias": "Q", "templateId": "Q___Glutamine" @@ -7634,8 +7634,8 @@ "id": "244", "seqid": 62, "position": { - "x": 61.000000, - "y": -1.000000 + "x": 91.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7645,8 +7645,8 @@ "id": "245", "seqid": 63, "position": { - "x": 62.000000, - "y": -1.000000 + "x": 93.000000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7656,8 +7656,8 @@ "id": "246", "seqid": 64, "position": { - "x": 63.000000, - "y": -1.000000 + "x": 94.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7667,8 +7667,8 @@ "id": "247", "seqid": 65, "position": { - "x": 64.000000, - "y": -1.000000 + "x": 96.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7678,8 +7678,8 @@ "id": "248", "seqid": 66, "position": { - "x": 65.000000, - "y": -1.000000 + "x": 97.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7689,8 +7689,8 @@ "id": "249", "seqid": 67, "position": { - "x": 66.000000, - "y": -1.000000 + "x": 99.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7700,8 +7700,8 @@ "id": "250", "seqid": 68, "position": { - "x": 67.000000, - "y": -1.000000 + "x": 100.500000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -7711,8 +7711,8 @@ "id": "251", "seqid": 69, "position": { - "x": 68.000000, - "y": -1.000000 + "x": 102.000000, + "y": -1.500000 }, "alias": "I", "templateId": "I___Isoleucine" @@ -7722,8 +7722,8 @@ "id": "252", "seqid": 70, "position": { - "x": 69.000000, - "y": -1.000000 + "x": 103.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7733,8 +7733,8 @@ "id": "253", "seqid": 71, "position": { - "x": 70.000000, - "y": -1.000000 + "x": 105.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7744,8 +7744,8 @@ "id": "254", "seqid": 72, "position": { - "x": 71.000000, - "y": -1.000000 + "x": 106.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7755,8 +7755,8 @@ "id": "255", "seqid": 73, "position": { - "x": 72.000000, - "y": -1.000000 + "x": 108.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7766,8 +7766,8 @@ "id": "256", "seqid": 74, "position": { - "x": 73.000000, - "y": -1.000000 + "x": 109.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7777,8 +7777,8 @@ "id": "257", "seqid": 75, "position": { - "x": 74.000000, - "y": -1.000000 + "x": 111.000000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7788,8 +7788,8 @@ "id": "258", "seqid": 76, "position": { - "x": 75.000000, - "y": -1.000000 + "x": 112.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -7799,8 +7799,8 @@ "id": "259", "seqid": 77, "position": { - "x": 76.000000, - "y": -1.000000 + "x": 114.000000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -7810,8 +7810,8 @@ "id": "260", "seqid": 78, "position": { - "x": 77.000000, - "y": -1.000000 + "x": 115.500000, + "y": -1.500000 }, "alias": "N", "templateId": "N___Asparagine" @@ -7821,8 +7821,8 @@ "id": "261", "seqid": 79, "position": { - "x": 78.000000, - "y": -1.000000 + "x": 117.000000, + "y": -1.500000 }, "alias": "M", "templateId": "M___Methionine" @@ -7832,8 +7832,8 @@ "id": "262", "seqid": 80, "position": { - "x": 79.000000, - "y": -1.000000 + "x": 118.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7843,8 +7843,8 @@ "id": "263", "seqid": 81, "position": { - "x": 80.000000, - "y": -1.000000 + "x": 120.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7854,8 +7854,8 @@ "id": "264", "seqid": 82, "position": { - "x": 81.000000, - "y": -1.000000 + "x": 121.500000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -7865,8 +7865,8 @@ "id": "265", "seqid": 83, "position": { - "x": 82.000000, - "y": -1.000000 + "x": 123.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -7876,8 +7876,8 @@ "id": "266", "seqid": 84, "position": { - "x": 83.000000, - "y": -1.000000 + "x": 124.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7887,8 +7887,8 @@ "id": "267", "seqid": 85, "position": { - "x": 84.000000, - "y": -1.000000 + "x": 126.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7898,8 +7898,8 @@ "id": "268", "seqid": 86, "position": { - "x": 85.000000, - "y": -1.000000 + "x": 127.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -7909,8 +7909,8 @@ "id": "269", "seqid": 87, "position": { - "x": 86.000000, - "y": -1.000000 + "x": 129.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -7920,8 +7920,8 @@ "id": "270", "seqid": 88, "position": { - "x": 87.000000, - "y": -1.000000 + "x": 130.500000, + "y": -1.500000 }, "alias": "I", "templateId": "I___Isoleucine" @@ -7931,8 +7931,8 @@ "id": "271", "seqid": 89, "position": { - "x": 88.000000, - "y": -1.000000 + "x": 132.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7942,8 +7942,8 @@ "id": "272", "seqid": 90, "position": { - "x": 89.000000, - "y": -1.000000 + "x": 133.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -7953,8 +7953,8 @@ "id": "273", "seqid": 91, "position": { - "x": 90.000000, - "y": -1.000000 + "x": 135.000000, + "y": -1.500000 }, "alias": "Q", "templateId": "Q___Glutamine" @@ -7964,8 +7964,8 @@ "id": "274", "seqid": 92, "position": { - "x": 91.000000, - "y": -1.000000 + "x": 136.500000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -7975,8 +7975,8 @@ "id": "275", "seqid": 93, "position": { - "x": 92.000000, - "y": -1.000000 + "x": 138.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7986,8 +7986,8 @@ "id": "276", "seqid": 94, "position": { - "x": 93.000000, - "y": -1.000000 + "x": 139.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -7997,8 +7997,8 @@ "id": "277", "seqid": 95, "position": { - "x": 94.000000, - "y": -1.000000 + "x": 141.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -8008,8 +8008,8 @@ "id": "278", "seqid": 96, "position": { - "x": 95.000000, - "y": -1.000000 + "x": 142.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -8019,8 +8019,8 @@ "id": "279", "seqid": 97, "position": { - "x": 96.000000, - "y": -1.000000 + "x": 144.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8030,8 +8030,8 @@ "id": "280", "seqid": 98, "position": { - "x": 97.000000, - "y": -1.000000 + "x": 145.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8041,8 +8041,8 @@ "id": "281", "seqid": 99, "position": { - "x": 98.000000, - "y": -1.000000 + "x": 147.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -8052,8 +8052,8 @@ "id": "282", "seqid": 100, "position": { - "x": 99.000000, - "y": -1.000000 + "x": 148.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8063,8 +8063,8 @@ "id": "283", "seqid": 101, "position": { - "x": 100.000000, - "y": -1.000000 + "x": 150.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8074,8 +8074,8 @@ "id": "284", "seqid": 102, "position": { - "x": 101.000000, - "y": -1.000000 + "x": 151.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -8085,8 +8085,8 @@ "id": "285", "seqid": 103, "position": { - "x": 102.000000, - "y": -1.000000 + "x": 153.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8096,8 +8096,8 @@ "id": "286", "seqid": 104, "position": { - "x": 103.000000, - "y": -1.000000 + "x": 154.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8107,8 +8107,8 @@ "id": "287", "seqid": 105, "position": { - "x": 104.000000, - "y": -1.000000 + "x": 156.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8118,8 +8118,8 @@ "id": "288", "seqid": 106, "position": { - "x": 105.000000, - "y": -1.000000 + "x": 157.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8129,8 +8129,8 @@ "id": "289", "seqid": 107, "position": { - "x": 106.000000, - "y": -1.000000 + "x": 159.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8140,8 +8140,8 @@ "id": "290", "seqid": 108, "position": { - "x": 107.000000, - "y": -1.000000 + "x": 160.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8151,8 +8151,8 @@ "id": "291", "seqid": 109, "position": { - "x": 108.000000, - "y": -1.000000 + "x": 162.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -8162,8 +8162,8 @@ "id": "292", "seqid": 110, "position": { - "x": 109.000000, - "y": -1.000000 + "x": 163.500000, + "y": -1.500000 }, "alias": "N", "templateId": "N___Asparagine" @@ -8173,8 +8173,8 @@ "id": "293", "seqid": 111, "position": { - "x": 110.000000, - "y": -1.000000 + "x": 165.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -8184,8 +8184,8 @@ "id": "294", "seqid": 112, "position": { - "x": 111.000000, - "y": -1.000000 + "x": 166.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8195,8 +8195,8 @@ "id": "295", "seqid": 113, "position": { - "x": 112.000000, - "y": -1.000000 + "x": 168.000000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -8206,8 +8206,8 @@ "id": "296", "seqid": 114, "position": { - "x": 113.000000, - "y": -1.000000 + "x": 169.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8217,8 +8217,8 @@ "id": "297", "seqid": 115, "position": { - "x": 114.000000, - "y": -1.000000 + "x": 171.000000, + "y": -1.500000 }, "alias": "W", "templateId": "W___Tryptophan" @@ -8228,8 +8228,8 @@ "id": "298", "seqid": 116, "position": { - "x": 115.000000, - "y": -1.000000 + "x": 172.500000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -8239,8 +8239,8 @@ "id": "299", "seqid": 117, "position": { - "x": 116.000000, - "y": -1.000000 + "x": 174.000000, + "y": -1.500000 }, "alias": "N", "templateId": "N___Asparagine" @@ -8250,8 +8250,8 @@ "id": "300", "seqid": 118, "position": { - "x": 117.000000, - "y": -1.000000 + "x": 175.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -8261,8 +8261,8 @@ "id": "301", "seqid": 119, "position": { - "x": 118.000000, - "y": -1.000000 + "x": 177.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -8272,8 +8272,8 @@ "id": "302", "seqid": 120, "position": { - "x": 119.000000, - "y": -1.000000 + "x": 178.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -8283,8 +8283,8 @@ "id": "303", "seqid": 121, "position": { - "x": 120.000000, - "y": -1.000000 + "x": 180.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8294,8 +8294,8 @@ "id": "304", "seqid": 122, "position": { - "x": 121.000000, - "y": -1.000000 + "x": 181.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -8305,8 +8305,8 @@ "id": "305", "seqid": 123, "position": { - "x": 122.000000, - "y": -1.000000 + "x": 183.000000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -8316,8 +8316,8 @@ "id": "306", "seqid": 124, "position": { - "x": 123.000000, - "y": -1.000000 + "x": 184.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8327,8 +8327,8 @@ "id": "307", "seqid": 125, "position": { - "x": 124.000000, - "y": -1.000000 + "x": 186.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8338,8 +8338,8 @@ "id": "308", "seqid": 126, "position": { - "x": 125.000000, - "y": -1.000000 + "x": 187.500000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -8349,8 +8349,8 @@ "id": "309", "seqid": 127, "position": { - "x": 126.000000, - "y": -1.000000 + "x": 189.000000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -8360,8 +8360,8 @@ "id": "310", "seqid": 128, "position": { - "x": 127.000000, - "y": -1.000000 + "x": 190.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8371,8 +8371,8 @@ "id": "311", "seqid": 129, "position": { - "x": 128.000000, - "y": -1.000000 + "x": 192.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8382,8 +8382,8 @@ "id": "312", "seqid": 130, "position": { - "x": 129.000000, - "y": -1.000000 + "x": 193.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8393,8 +8393,8 @@ "id": "313", "seqid": 131, "position": { - "x": 130.000000, - "y": -1.000000 + "x": 195.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -8404,8 +8404,8 @@ "id": "314", "seqid": 132, "position": { - "x": 131.000000, - "y": -1.000000 + "x": 196.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8415,8 +8415,8 @@ "id": "315", "seqid": 133, "position": { - "x": 132.000000, - "y": -1.000000 + "x": 198.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -8426,8 +8426,8 @@ "id": "316", "seqid": 134, "position": { - "x": 133.000000, - "y": -1.000000 + "x": 199.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8437,8 +8437,8 @@ "id": "317", "seqid": 135, "position": { - "x": 134.000000, - "y": -1.000000 + "x": 201.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -8448,8 +8448,8 @@ "id": "318", "seqid": 136, "position": { - "x": 135.000000, - "y": -1.000000 + "x": 202.500000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -8459,8 +8459,8 @@ "id": "319", "seqid": 137, "position": { - "x": 136.000000, - "y": -1.000000 + "x": 204.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8470,8 +8470,8 @@ "id": "320", "seqid": 138, "position": { - "x": 137.000000, - "y": -1.000000 + "x": 205.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -8481,8 +8481,8 @@ "id": "321", "seqid": 139, "position": { - "x": 138.000000, - "y": -1.000000 + "x": 207.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -8492,8 +8492,8 @@ "id": "322", "seqid": 140, "position": { - "x": 139.000000, - "y": -1.000000 + "x": 208.500000, + "y": -1.500000 }, "alias": "V", "templateId": "V___Valine" @@ -8503,8 +8503,8 @@ "id": "323", "seqid": 141, "position": { - "x": 140.000000, - "y": -1.000000 + "x": 210.000000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -8514,8 +8514,8 @@ "id": "324", "seqid": 142, "position": { - "x": 141.000000, - "y": -1.000000 + "x": 211.500000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -8525,8 +8525,8 @@ "id": "325", "seqid": 143, "position": { - "x": 142.000000, - "y": -1.000000 + "x": 213.000000, + "y": -1.500000 }, "alias": "M", "templateId": "M___Methionine" @@ -8536,8 +8536,8 @@ "id": "326", "seqid": 144, "position": { - "x": 143.000000, - "y": -1.000000 + "x": 214.500000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -8547,8 +8547,8 @@ "id": "327", "seqid": 145, "position": { - "x": 144.000000, - "y": -1.000000 + "x": 216.000000, + "y": -1.500000 }, "alias": "Q", "templateId": "Q___Glutamine" @@ -8558,8 +8558,8 @@ "id": "328", "seqid": 146, "position": { - "x": 145.000000, - "y": -1.000000 + "x": 217.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8569,8 +8569,8 @@ "id": "329", "seqid": 147, "position": { - "x": 146.000000, - "y": -1.000000 + "x": 219.000000, + "y": -1.500000 }, "alias": "E", "templateId": "E___Glutamic acid" @@ -8580,8 +8580,8 @@ "id": "330", "seqid": 148, "position": { - "x": 147.000000, - "y": -1.000000 + "x": 220.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8591,8 +8591,8 @@ "id": "331", "seqid": 149, "position": { - "x": 148.000000, - "y": -1.000000 + "x": 222.000000, + "y": -1.500000 }, "alias": "K", "templateId": "K___Lysine" @@ -8602,8 +8602,8 @@ "id": "332", "seqid": 150, "position": { - "x": 149.000000, - "y": -1.000000 + "x": 223.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8613,8 +8613,8 @@ "id": "333", "seqid": 151, "position": { - "x": 150.000000, - "y": -1.000000 + "x": 225.000000, + "y": -1.500000 }, "alias": "H", "templateId": "H___Histidine" @@ -8624,8 +8624,8 @@ "id": "334", "seqid": 152, "position": { - "x": 151.000000, - "y": -1.000000 + "x": 226.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -8635,8 +8635,8 @@ "id": "335", "seqid": 153, "position": { - "x": 152.000000, - "y": -1.000000 + "x": 228.000000, + "y": -1.500000 }, "alias": "Y", "templateId": "Y___Tyrosine" @@ -8646,8 +8646,8 @@ "id": "336", "seqid": 154, "position": { - "x": 153.000000, - "y": -1.000000 + "x": 229.500000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -8657,8 +8657,8 @@ "id": "337", "seqid": 155, "position": { - "x": 154.000000, - "y": -1.000000 + "x": 231.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8668,8 +8668,8 @@ "id": "338", "seqid": 156, "position": { - "x": 155.000000, - "y": -1.000000 + "x": 232.500000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" @@ -8679,8 +8679,8 @@ "id": "339", "seqid": 157, "position": { - "x": 156.000000, - "y": -1.000000 + "x": 234.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8690,8 +8690,8 @@ "id": "340", "seqid": 158, "position": { - "x": 157.000000, - "y": -1.000000 + "x": 235.500000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8701,8 +8701,8 @@ "id": "341", "seqid": 159, "position": { - "x": 158.000000, - "y": -1.000000 + "x": 237.000000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -8712,8 +8712,8 @@ "id": "342", "seqid": 160, "position": { - "x": 159.000000, - "y": -1.000000 + "x": 238.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -8723,8 +8723,8 @@ "id": "343", "seqid": 161, "position": { - "x": 160.000000, - "y": -1.000000 + "x": 240.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8734,8 +8734,8 @@ "id": "344", "seqid": 162, "position": { - "x": 161.000000, - "y": -1.000000 + "x": 241.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -8745,8 +8745,8 @@ "id": "345", "seqid": 163, "position": { - "x": 162.000000, - "y": -1.000000 + "x": 243.000000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -8756,8 +8756,8 @@ "id": "346", "seqid": 164, "position": { - "x": 163.000000, - "y": -1.000000 + "x": 244.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -8767,8 +8767,8 @@ "id": "347", "seqid": 165, "position": { - "x": 164.000000, - "y": -1.000000 + "x": 246.000000, + "y": -1.500000 }, "alias": "L", "templateId": "L___Leucine" @@ -8778,8 +8778,8 @@ "id": "348", "seqid": 166, "position": { - "x": 165.000000, - "y": -1.000000 + "x": 247.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -8789,8 +8789,8 @@ "id": "349", "seqid": 167, "position": { - "x": 166.000000, - "y": -1.000000 + "x": 249.000000, + "y": -1.500000 }, "alias": "F", "templateId": "F___Phenylalanine" diff --git a/api/tests/integration/tests/formats/ref/comment.ket b/api/tests/integration/tests/formats/ref/comment.ket index f6d6c05771..461587db8d 100644 --- a/api/tests/integration/tests/formats/ref/comment.ket +++ b/api/tests/integration/tests/formats/ref/comment.ket @@ -1973,7 +1973,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "C", @@ -1984,7 +1984,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "A", @@ -1995,7 +1995,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "G", @@ -2006,7 +2006,7 @@ "id": "4", "seqid": 5, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "T", @@ -2017,7 +2017,7 @@ "id": "5", "seqid": 6, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "G", @@ -2028,7 +2028,7 @@ "id": "6", "seqid": 7, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "G", @@ -2039,7 +2039,7 @@ "id": "7", "seqid": 8, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "G", @@ -2050,7 +2050,7 @@ "id": "8", "seqid": 9, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "A", @@ -2061,7 +2061,7 @@ "id": "9", "seqid": 10, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "A", @@ -2072,7 +2072,7 @@ "id": "10", "seqid": 11, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "G", @@ -2083,7 +2083,7 @@ "id": "11", "seqid": 12, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "A", @@ -2094,7 +2094,7 @@ "id": "12", "seqid": 13, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "G", @@ -2105,7 +2105,7 @@ "id": "13", "seqid": 14, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "G", @@ -2116,7 +2116,7 @@ "id": "14", "seqid": 15, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "A", @@ -2127,7 +2127,7 @@ "id": "15", "seqid": 16, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "G", @@ -2138,7 +2138,7 @@ "id": "16", "seqid": 17, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "C", @@ -2149,7 +2149,7 @@ "id": "17", "seqid": 18, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "T", @@ -2160,7 +2160,7 @@ "id": "18", "seqid": 19, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "T", @@ -2171,7 +2171,7 @@ "id": "19", "seqid": 20, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "T", @@ -2182,7 +2182,7 @@ "id": "20", "seqid": 21, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "G", @@ -2193,7 +2193,7 @@ "id": "21", "seqid": 22, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "T", @@ -2204,7 +2204,7 @@ "id": "22", "seqid": 23, "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "alias": "T", @@ -2215,7 +2215,7 @@ "id": "23", "seqid": 24, "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "alias": "C", @@ -2226,7 +2226,7 @@ "id": "24", "seqid": 25, "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "alias": "C", @@ -2237,7 +2237,7 @@ "id": "25", "seqid": 26, "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "alias": "T", @@ -2248,7 +2248,7 @@ "id": "26", "seqid": 27, "position": { - "x": 26.000000, + "x": 39.000000, "y": -0.000000 }, "alias": "T", @@ -2259,7 +2259,7 @@ "id": "27", "seqid": 28, "position": { - "x": 27.000000, + "x": 40.500000, "y": -0.000000 }, "alias": "G", @@ -2270,7 +2270,7 @@ "id": "28", "seqid": 29, "position": { - "x": 28.000000, + "x": 42.000000, "y": -0.000000 }, "alias": "G", @@ -2281,7 +2281,7 @@ "id": "29", "seqid": 30, "position": { - "x": 29.000000, + "x": 43.500000, "y": -0.000000 }, "alias": "G", @@ -2292,7 +2292,7 @@ "id": "30", "seqid": 31, "position": { - "x": 30.000000, + "x": 45.000000, "y": -0.000000 }, "alias": "T", @@ -2303,7 +2303,7 @@ "id": "31", "seqid": 32, "position": { - "x": 31.000000, + "x": 46.500000, "y": -0.000000 }, "alias": "T", @@ -2314,7 +2314,7 @@ "id": "32", "seqid": 33, "position": { - "x": 32.000000, + "x": 48.000000, "y": -0.000000 }, "alias": "C", @@ -2325,7 +2325,7 @@ "id": "33", "seqid": 34, "position": { - "x": 33.000000, + "x": 49.500000, "y": -0.000000 }, "alias": "T", @@ -2336,7 +2336,7 @@ "id": "34", "seqid": 35, "position": { - "x": 34.000000, + "x": 51.000000, "y": -0.000000 }, "alias": "T", @@ -2347,7 +2347,7 @@ "id": "35", "seqid": 36, "position": { - "x": 35.000000, + "x": 52.500000, "y": -0.000000 }, "alias": "G", @@ -2358,7 +2358,7 @@ "id": "36", "seqid": 37, "position": { - "x": 36.000000, + "x": 54.000000, "y": -0.000000 }, "alias": "G", @@ -2369,7 +2369,7 @@ "id": "37", "seqid": 38, "position": { - "x": 37.000000, + "x": 55.500000, "y": -0.000000 }, "alias": "G", @@ -2380,7 +2380,7 @@ "id": "38", "seqid": 39, "position": { - "x": 38.000000, + "x": 57.000000, "y": -0.000000 }, "alias": "A", @@ -2391,7 +2391,7 @@ "id": "39", "seqid": 40, "position": { - "x": 39.000000, + "x": 58.500000, "y": -0.000000 }, "alias": "G", @@ -2402,7 +2402,7 @@ "id": "40", "seqid": 41, "position": { - "x": 40.000000, + "x": 60.000000, "y": -0.000000 }, "alias": "C", @@ -2413,7 +2413,7 @@ "id": "41", "seqid": 42, "position": { - "x": 41.000000, + "x": 61.500000, "y": -0.000000 }, "alias": "A", @@ -2424,7 +2424,7 @@ "id": "42", "seqid": 43, "position": { - "x": 42.000000, + "x": 63.000000, "y": -0.000000 }, "alias": "G", @@ -2435,7 +2435,7 @@ "id": "43", "seqid": 44, "position": { - "x": 43.000000, + "x": 64.500000, "y": -0.000000 }, "alias": "C", @@ -2446,7 +2446,7 @@ "id": "44", "seqid": 45, "position": { - "x": 44.000000, + "x": 66.000000, "y": -0.000000 }, "alias": "A", @@ -2457,7 +2457,7 @@ "id": "45", "seqid": 46, "position": { - "x": 45.000000, + "x": 67.500000, "y": -0.000000 }, "alias": "G", @@ -2468,7 +2468,7 @@ "id": "46", "seqid": 47, "position": { - "x": 46.000000, + "x": 69.000000, "y": -0.000000 }, "alias": "G", @@ -2479,7 +2479,7 @@ "id": "47", "seqid": 48, "position": { - "x": 47.000000, + "x": 70.500000, "y": -0.000000 }, "alias": "A", @@ -2490,7 +2490,7 @@ "id": "48", "seqid": 49, "position": { - "x": 48.000000, + "x": 72.000000, "y": -0.000000 }, "alias": "A", @@ -2501,7 +2501,7 @@ "id": "49", "seqid": 50, "position": { - "x": 49.000000, + "x": 73.500000, "y": -0.000000 }, "alias": "G", @@ -2512,7 +2512,7 @@ "id": "50", "seqid": 51, "position": { - "x": 50.000000, + "x": 75.000000, "y": -0.000000 }, "alias": "C", @@ -2523,7 +2523,7 @@ "id": "51", "seqid": 52, "position": { - "x": 51.000000, + "x": 76.500000, "y": -0.000000 }, "alias": "A", @@ -2534,7 +2534,7 @@ "id": "52", "seqid": 53, "position": { - "x": 52.000000, + "x": 78.000000, "y": -0.000000 }, "alias": "C", @@ -2545,7 +2545,7 @@ "id": "53", "seqid": 54, "position": { - "x": 53.000000, + "x": 79.500000, "y": -0.000000 }, "alias": "T", @@ -2556,7 +2556,7 @@ "id": "54", "seqid": 55, "position": { - "x": 54.000000, + "x": 81.000000, "y": -0.000000 }, "alias": "A", @@ -2567,7 +2567,7 @@ "id": "55", "seqid": 56, "position": { - "x": 55.000000, + "x": 82.500000, "y": -0.000000 }, "alias": "T", @@ -2578,7 +2578,7 @@ "id": "56", "seqid": 57, "position": { - "x": 56.000000, + "x": 84.000000, "y": -0.000000 }, "alias": "G", @@ -2589,7 +2589,7 @@ "id": "57", "seqid": 58, "position": { - "x": 57.000000, + "x": 85.500000, "y": -0.000000 }, "alias": "G", @@ -2600,7 +2600,7 @@ "id": "58", "seqid": 59, "position": { - "x": 58.000000, + "x": 87.000000, "y": -0.000000 }, "alias": "G", @@ -2611,7 +2611,7 @@ "id": "59", "seqid": 60, "position": { - "x": 59.000000, + "x": 88.500000, "y": -0.000000 }, "alias": "C", @@ -2622,7 +2622,7 @@ "id": "60", "seqid": 61, "position": { - "x": 60.000000, + "x": 90.000000, "y": -0.000000 }, "alias": "G", @@ -2633,7 +2633,7 @@ "id": "61", "seqid": 62, "position": { - "x": 61.000000, + "x": 91.500000, "y": -0.000000 }, "alias": "C", @@ -2644,7 +2644,7 @@ "id": "62", "seqid": 63, "position": { - "x": 62.000000, + "x": 93.000000, "y": -0.000000 }, "alias": "A", @@ -2655,7 +2655,7 @@ "id": "63", "seqid": 64, "position": { - "x": 63.000000, + "x": 94.500000, "y": -0.000000 }, "alias": "G", @@ -2666,7 +2666,7 @@ "id": "64", "seqid": 65, "position": { - "x": 64.000000, + "x": 96.000000, "y": -0.000000 }, "alias": "C", @@ -2677,7 +2677,7 @@ "id": "65", "seqid": 66, "position": { - "x": 65.000000, + "x": 97.500000, "y": -0.000000 }, "alias": "C", @@ -2688,7 +2688,7 @@ "id": "66", "seqid": 67, "position": { - "x": 66.000000, + "x": 99.000000, "y": -0.000000 }, "alias": "T", @@ -2699,7 +2699,7 @@ "id": "67", "seqid": 68, "position": { - "x": 67.000000, + "x": 100.500000, "y": -0.000000 }, "alias": "C", @@ -2710,7 +2710,7 @@ "id": "68", "seqid": 69, "position": { - "x": 68.000000, + "x": 102.000000, "y": -0.000000 }, "alias": "A", @@ -2721,7 +2721,7 @@ "id": "69", "seqid": 70, "position": { - "x": 69.000000, + "x": 103.500000, "y": -0.000000 }, "alias": "A", @@ -2733,7 +2733,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2743,8 +2743,8 @@ "id": "71", "seqid": 2, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -2754,8 +2754,8 @@ "id": "72", "seqid": 3, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -2765,8 +2765,8 @@ "id": "73", "seqid": 4, "position": { - "x": 3.000000, - "y": -1.000000 + "x": 4.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2776,8 +2776,8 @@ "id": "74", "seqid": 5, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -2787,8 +2787,8 @@ "id": "75", "seqid": 6, "position": { - "x": 5.000000, - "y": -1.000000 + "x": 7.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2798,8 +2798,8 @@ "id": "76", "seqid": 7, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2809,8 +2809,8 @@ "id": "77", "seqid": 8, "position": { - "x": 7.000000, - "y": -1.000000 + "x": 10.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2820,8 +2820,8 @@ "id": "78", "seqid": 9, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -2831,8 +2831,8 @@ "id": "79", "seqid": 10, "position": { - "x": 9.000000, - "y": -1.000000 + "x": 13.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -2842,8 +2842,8 @@ "id": "80", "seqid": 11, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2853,8 +2853,8 @@ "id": "81", "seqid": 12, "position": { - "x": 11.000000, - "y": -1.000000 + "x": 16.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -2864,8 +2864,8 @@ "id": "82", "seqid": 13, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2875,8 +2875,8 @@ "id": "83", "seqid": 14, "position": { - "x": 13.000000, - "y": -1.000000 + "x": 19.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2886,8 +2886,8 @@ "id": "84", "seqid": 15, "position": { - "x": 14.000000, - "y": -1.000000 + "x": 21.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -2897,8 +2897,8 @@ "id": "85", "seqid": 16, "position": { - "x": 15.000000, - "y": -1.000000 + "x": 22.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2908,8 +2908,8 @@ "id": "86", "seqid": 17, "position": { - "x": 16.000000, - "y": -1.000000 + "x": 24.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -2919,8 +2919,8 @@ "id": "87", "seqid": 18, "position": { - "x": 17.000000, - "y": -1.000000 + "x": 25.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -2930,8 +2930,8 @@ "id": "88", "seqid": 19, "position": { - "x": 18.000000, - "y": -1.000000 + "x": 27.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -2941,8 +2941,8 @@ "id": "89", "seqid": 20, "position": { - "x": 19.000000, - "y": -1.000000 + "x": 28.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -2952,8 +2952,8 @@ "id": "90", "seqid": 21, "position": { - "x": 20.000000, - "y": -1.000000 + "x": 30.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -2963,8 +2963,8 @@ "id": "91", "seqid": 22, "position": { - "x": 21.000000, - "y": -1.000000 + "x": 31.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -2974,8 +2974,8 @@ "id": "92", "seqid": 23, "position": { - "x": 22.000000, - "y": -1.000000 + "x": 33.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -2985,8 +2985,8 @@ "id": "93", "seqid": 24, "position": { - "x": 23.000000, - "y": -1.000000 + "x": 34.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -2996,8 +2996,8 @@ "id": "94", "seqid": 25, "position": { - "x": 24.000000, - "y": -1.000000 + "x": 36.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3007,8 +3007,8 @@ "id": "95", "seqid": 26, "position": { - "x": 25.000000, - "y": -1.000000 + "x": 37.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3018,8 +3018,8 @@ "id": "96", "seqid": 27, "position": { - "x": 26.000000, - "y": -1.000000 + "x": 39.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3029,8 +3029,8 @@ "id": "97", "seqid": 28, "position": { - "x": 27.000000, - "y": -1.000000 + "x": 40.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3040,8 +3040,8 @@ "id": "98", "seqid": 29, "position": { - "x": 28.000000, - "y": -1.000000 + "x": 42.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3051,8 +3051,8 @@ "id": "99", "seqid": 30, "position": { - "x": 29.000000, - "y": -1.000000 + "x": 43.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3062,8 +3062,8 @@ "id": "100", "seqid": 31, "position": { - "x": 30.000000, - "y": -1.000000 + "x": 45.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3073,8 +3073,8 @@ "id": "101", "seqid": 32, "position": { - "x": 31.000000, - "y": -1.000000 + "x": 46.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3084,8 +3084,8 @@ "id": "102", "seqid": 33, "position": { - "x": 32.000000, - "y": -1.000000 + "x": 48.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3095,8 +3095,8 @@ "id": "103", "seqid": 34, "position": { - "x": 33.000000, - "y": -1.000000 + "x": 49.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3106,8 +3106,8 @@ "id": "104", "seqid": 35, "position": { - "x": 34.000000, - "y": -1.000000 + "x": 51.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3117,8 +3117,8 @@ "id": "105", "seqid": 36, "position": { - "x": 35.000000, - "y": -1.000000 + "x": 52.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3128,8 +3128,8 @@ "id": "106", "seqid": 37, "position": { - "x": 36.000000, - "y": -1.000000 + "x": 54.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3139,8 +3139,8 @@ "id": "107", "seqid": 38, "position": { - "x": 37.000000, - "y": -1.000000 + "x": 55.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3150,8 +3150,8 @@ "id": "108", "seqid": 39, "position": { - "x": 38.000000, - "y": -1.000000 + "x": 57.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3161,8 +3161,8 @@ "id": "109", "seqid": 40, "position": { - "x": 39.000000, - "y": -1.000000 + "x": 58.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3172,8 +3172,8 @@ "id": "110", "seqid": 41, "position": { - "x": 40.000000, - "y": -1.000000 + "x": 60.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3183,8 +3183,8 @@ "id": "111", "seqid": 42, "position": { - "x": 41.000000, - "y": -1.000000 + "x": 61.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3194,8 +3194,8 @@ "id": "112", "seqid": 43, "position": { - "x": 42.000000, - "y": -1.000000 + "x": 63.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3205,8 +3205,8 @@ "id": "113", "seqid": 44, "position": { - "x": 43.000000, - "y": -1.000000 + "x": 64.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3216,8 +3216,8 @@ "id": "114", "seqid": 45, "position": { - "x": 44.000000, - "y": -1.000000 + "x": 66.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3227,8 +3227,8 @@ "id": "115", "seqid": 46, "position": { - "x": 45.000000, - "y": -1.000000 + "x": 67.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3238,8 +3238,8 @@ "id": "116", "seqid": 47, "position": { - "x": 46.000000, - "y": -1.000000 + "x": 69.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3249,8 +3249,8 @@ "id": "117", "seqid": 48, "position": { - "x": 47.000000, - "y": -1.000000 + "x": 70.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3260,8 +3260,8 @@ "id": "118", "seqid": 49, "position": { - "x": 48.000000, - "y": -1.000000 + "x": 72.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3271,8 +3271,8 @@ "id": "119", "seqid": 50, "position": { - "x": 49.000000, - "y": -1.000000 + "x": 73.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3282,8 +3282,8 @@ "id": "120", "seqid": 51, "position": { - "x": 50.000000, - "y": -1.000000 + "x": 75.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3293,8 +3293,8 @@ "id": "121", "seqid": 52, "position": { - "x": 51.000000, - "y": -1.000000 + "x": 76.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3304,8 +3304,8 @@ "id": "122", "seqid": 53, "position": { - "x": 52.000000, - "y": -1.000000 + "x": 78.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3315,8 +3315,8 @@ "id": "123", "seqid": 54, "position": { - "x": 53.000000, - "y": -1.000000 + "x": 79.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3326,8 +3326,8 @@ "id": "124", "seqid": 55, "position": { - "x": 54.000000, - "y": -1.000000 + "x": 81.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3337,8 +3337,8 @@ "id": "125", "seqid": 56, "position": { - "x": 55.000000, - "y": -1.000000 + "x": 82.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3348,8 +3348,8 @@ "id": "126", "seqid": 57, "position": { - "x": 56.000000, - "y": -1.000000 + "x": 84.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3359,8 +3359,8 @@ "id": "127", "seqid": 58, "position": { - "x": 57.000000, - "y": -1.000000 + "x": 85.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3370,8 +3370,8 @@ "id": "128", "seqid": 59, "position": { - "x": 58.000000, - "y": -1.000000 + "x": 87.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3381,8 +3381,8 @@ "id": "129", "seqid": 60, "position": { - "x": 59.000000, - "y": -1.000000 + "x": 88.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3392,8 +3392,8 @@ "id": "130", "seqid": 61, "position": { - "x": 60.000000, - "y": -1.000000 + "x": 90.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3403,8 +3403,8 @@ "id": "131", "seqid": 62, "position": { - "x": 61.000000, - "y": -1.000000 + "x": 91.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3414,8 +3414,8 @@ "id": "132", "seqid": 63, "position": { - "x": 62.000000, - "y": -1.000000 + "x": 93.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3425,8 +3425,8 @@ "id": "133", "seqid": 64, "position": { - "x": 63.000000, - "y": -1.000000 + "x": 94.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -3436,8 +3436,8 @@ "id": "134", "seqid": 65, "position": { - "x": 64.000000, - "y": -1.000000 + "x": 96.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3447,8 +3447,8 @@ "id": "135", "seqid": 66, "position": { - "x": 65.000000, - "y": -1.000000 + "x": 97.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3458,8 +3458,8 @@ "id": "136", "seqid": 67, "position": { - "x": 66.000000, - "y": -1.000000 + "x": 99.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Threonine" @@ -3469,8 +3469,8 @@ "id": "137", "seqid": 68, "position": { - "x": 67.000000, - "y": -1.000000 + "x": 100.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" @@ -3480,8 +3480,8 @@ "id": "138", "seqid": 69, "position": { - "x": 68.000000, - "y": -1.000000 + "x": 102.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -3491,8 +3491,8 @@ "id": "139", "seqid": 70, "position": { - "x": 69.000000, - "y": -1.000000 + "x": 103.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" diff --git a/api/tests/integration/tests/formats/ref/dna_acgtu.ket b/api/tests/integration/tests/formats/ref/dna_acgtu.ket index 9e91a7354f..e697fcdc77 100644 --- a/api/tests/integration/tests/formats/ref/dna_acgtu.ket +++ b/api/tests/integration/tests/formats/ref/dna_acgtu.ket @@ -230,7 +230,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -240,7 +240,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -251,8 +251,8 @@ "id": "3", "seqid": 2, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -262,7 +262,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -273,7 +273,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -284,8 +284,8 @@ "id": "6", "seqid": 3, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -295,7 +295,7 @@ "id": "7", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -306,7 +306,7 @@ "id": "8", "seqid": 4, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -317,8 +317,8 @@ "id": "9", "seqid": 4, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -328,7 +328,7 @@ "id": "10", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -339,7 +339,7 @@ "id": "11", "seqid": 5, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "dR", @@ -350,8 +350,8 @@ "id": "12", "seqid": 5, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -361,7 +361,7 @@ "id": "13", "seqid": 4, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/dna_variants.ket b/api/tests/integration/tests/formats/ref/dna_variants.ket index cb4fc68cf4..13fbcbf076 100644 --- a/api/tests/integration/tests/formats/ref/dna_variants.ket +++ b/api/tests/integration/tests/formats/ref/dna_variants.ket @@ -106,7 +106,7 @@ "id": "1", "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "seqid": 1, "alias": "B", @@ -117,7 +117,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -127,8 +127,8 @@ "type": "ambiguousMonomer", "id": "3", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 2, "alias": "N", @@ -139,7 +139,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/helm_aminoacids_variants.ket b/api/tests/integration/tests/formats/ref/helm_aminoacids_variants.ket index 69d232d31d..95d19f10b7 100644 --- a/api/tests/integration/tests/formats/ref/helm_aminoacids_variants.ket +++ b/api/tests/integration/tests/formats/ref/helm_aminoacids_variants.ket @@ -148,7 +148,7 @@ "type": "ambiguousMonomer", "id": "1", "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "seqid": 2, @@ -159,7 +159,7 @@ "type": "ambiguousMonomer", "id": "2", "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "seqid": 3, @@ -170,7 +170,7 @@ "type": "ambiguousMonomer", "id": "3", "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "seqid": 4, diff --git a/api/tests/integration/tests/formats/ref/helm_annotations.ket b/api/tests/integration/tests/formats/ref/helm_annotations.ket index cf9d63b988..081c782a88 100644 --- a/api/tests/integration/tests/formats/ref/helm_annotations.ket +++ b/api/tests/integration/tests/formats/ref/helm_annotations.ket @@ -149,7 +149,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "hxy", "templateId": "hxy___Hexynyl alcohol" @@ -160,7 +160,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -2.000000 + "y": -3.000000 }, "alias": "R", "templateId": "R___Ribose" @@ -171,7 +171,7 @@ "seqid": 3, "position": { "x": 0.000000, - "y": -3.000000 + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -181,8 +181,8 @@ "id": "3", "seqid": 4, "position": { - "x": 1.000000, - "y": -2.000000 + "x": 1.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -192,8 +192,8 @@ "id": "4", "seqid": 5, "position": { - "x": 2.000000, - "y": -2.000000 + "x": 3.000000, + "y": -3.000000 }, "alias": "R", "templateId": "R___Ribose" @@ -203,8 +203,8 @@ "id": "5", "seqid": 6, "position": { - "x": 2.000000, - "y": -3.000000 + "x": 3.000000, + "y": -4.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -214,8 +214,8 @@ "id": "6", "seqid": 7, "position": { - "x": 3.000000, - "y": -2.000000 + "x": 4.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -225,8 +225,8 @@ "id": "7", "seqid": 8, "position": { - "x": 4.000000, - "y": -2.000000 + "x": 6.000000, + "y": -3.000000 }, "alias": "R", "templateId": "R___Ribose" @@ -236,8 +236,8 @@ "id": "8", "seqid": 9, "position": { - "x": 4.000000, - "y": -3.000000 + "x": 6.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -247,8 +247,8 @@ "id": "9", "seqid": 10, "position": { - "x": 5.000000, - "y": -2.000000 + "x": 7.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" diff --git a/api/tests/integration/tests/formats/ref/helm_chem_peptide.ket b/api/tests/integration/tests/formats/ref/helm_chem_peptide.ket index 2f05eb9740..e83496a2cc 100644 --- a/api/tests/integration/tests/formats/ref/helm_chem_peptide.ket +++ b/api/tests/integration/tests/formats/ref/helm_chem_peptide.ket @@ -239,7 +239,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "W", "templateId": "W___Tryptophan" @@ -249,8 +249,8 @@ "id": "2", "seqid": 3, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "N", "templateId": "N___Asparagine" @@ -260,8 +260,8 @@ "id": "3", "seqid": 4, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -271,8 +271,8 @@ "id": "4", "seqid": 5, "position": { - "x": 3.000000, - "y": -1.000000 + "x": 4.500000, + "y": -1.500000 }, "alias": "Pen", "templateId": "Pen___penicillamine (3-mercaptovaline)" @@ -282,8 +282,8 @@ "id": "5", "seqid": 6, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -293,8 +293,8 @@ "id": "6", "seqid": 7, "position": { - "x": 5.000000, - "y": -1.000000 + "x": 7.500000, + "y": -1.500000 }, "alias": "Orn", "templateId": "Orn___L-ornithine" @@ -304,8 +304,8 @@ "id": "7", "seqid": 8, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -315,8 +315,8 @@ "id": "8", "seqid": 9, "position": { - "x": 7.000000, - "y": -1.000000 + "x": 10.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -326,8 +326,8 @@ "id": "9", "seqid": 10, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -337,8 +337,8 @@ "id": "10", "seqid": 11, "position": { - "x": 9.000000, - "y": -1.000000 + "x": 13.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -348,8 +348,8 @@ "id": "11", "seqid": 12, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -359,8 +359,8 @@ "id": "12", "seqid": 13, "position": { - "x": 11.000000, - "y": -1.000000 + "x": 16.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -370,8 +370,8 @@ "id": "13", "seqid": 14, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "Cap", "templateId": "Cap___gamma-amino-beta-hydroxycyclohexanepentanoic acid" diff --git a/api/tests/integration/tests/formats/ref/helm_chem_rna.ket b/api/tests/integration/tests/formats/ref/helm_chem_rna.ket index 64045a2e95..da9d1f427d 100644 --- a/api/tests/integration/tests/formats/ref/helm_chem_rna.ket +++ b/api/tests/integration/tests/formats/ref/helm_chem_rna.ket @@ -81,7 +81,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "R", "templateId": "R___Ribose" @@ -92,7 +92,7 @@ "seqid": 3, "position": { "x": 0.000000, - "y": -2.000000 + "y": -3.000000 }, "alias": "U", "templateId": "U___Uracil" @@ -102,8 +102,8 @@ "id": "3", "seqid": 4, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Phosphate" diff --git a/api/tests/integration/tests/formats/ref/helm_chem_rna_hydro.ket b/api/tests/integration/tests/formats/ref/helm_chem_rna_hydro.ket index 132af9e70a..5c2984bfff 100644 --- a/api/tests/integration/tests/formats/ref/helm_chem_rna_hydro.ket +++ b/api/tests/integration/tests/formats/ref/helm_chem_rna_hydro.ket @@ -79,7 +79,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "R", "templateId": "R___Ribose" @@ -90,7 +90,7 @@ "seqid": 3, "position": { "x": 0.000000, - "y": -2.000000 + "y": -3.000000 }, "alias": "U", "templateId": "U___Uracil" @@ -100,8 +100,8 @@ "id": "3", "seqid": 4, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Phosphate" diff --git a/api/tests/integration/tests/formats/ref/helm_mixed_base.ket b/api/tests/integration/tests/formats/ref/helm_mixed_base.ket index 4b261f1e30..09a407dc28 100644 --- a/api/tests/integration/tests/formats/ref/helm_mixed_base.ket +++ b/api/tests/integration/tests/formats/ref/helm_mixed_base.ket @@ -188,7 +188,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -198,7 +198,7 @@ "id": "2", "seqid": 3, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -209,7 +209,7 @@ "id": "3", "seqid": 4, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -219,8 +219,8 @@ "type": "ambiguousMonomer", "id": "4", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 5, "alias": "Var0", @@ -231,7 +231,7 @@ "id": "5", "seqid": 6, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -242,7 +242,7 @@ "id": "6", "seqid": 7, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -253,8 +253,8 @@ "id": "7", "seqid": 8, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -264,7 +264,7 @@ "id": "8", "seqid": 9, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -275,7 +275,7 @@ "id": "9", "seqid": 10, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -285,8 +285,8 @@ "type": "ambiguousMonomer", "id": "10", "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "seqid": 11, "alias": "Var1", diff --git a/api/tests/integration/tests/formats/ref/helm_mixed_custom.ket b/api/tests/integration/tests/formats/ref/helm_mixed_custom.ket index c3f1d20779..6040afd837 100644 --- a/api/tests/integration/tests/formats/ref/helm_mixed_custom.ket +++ b/api/tests/integration/tests/formats/ref/helm_mixed_custom.ket @@ -154,7 +154,7 @@ "id": "1", "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "seqid": 2, "alias": "Var0", @@ -165,7 +165,7 @@ "id": "2", "seqid": 3, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -176,7 +176,7 @@ "id": "3", "seqid": 4, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -186,8 +186,8 @@ "type": "ambiguousMonomer", "id": "4", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 5, "alias": "Var1", @@ -198,7 +198,7 @@ "id": "5", "seqid": 6, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -209,7 +209,7 @@ "id": "6", "seqid": 7, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -219,8 +219,8 @@ "type": "ambiguousMonomer", "id": "7", "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "seqid": 8, "alias": "Var2", diff --git a/api/tests/integration/tests/formats/ref/helm_multi_char_rna.ket b/api/tests/integration/tests/formats/ref/helm_multi_char_rna.ket index 45a06de8eb..6342f7a228 100644 --- a/api/tests/integration/tests/formats/ref/helm_multi_char_rna.ket +++ b/api/tests/integration/tests/formats/ref/helm_multi_char_rna.ket @@ -230,7 +230,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -240,7 +240,7 @@ "id": "2", "seqid": 3, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -251,7 +251,7 @@ "id": "3", "seqid": 4, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "R", @@ -262,8 +262,8 @@ "id": "4", "seqid": 5, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -273,7 +273,7 @@ "id": "5", "seqid": 6, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -284,7 +284,7 @@ "id": "6", "seqid": 7, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "R", @@ -295,8 +295,8 @@ "id": "7", "seqid": 8, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -306,7 +306,7 @@ "id": "8", "seqid": 9, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -317,7 +317,7 @@ "id": "9", "seqid": 10, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "R", @@ -328,8 +328,8 @@ "id": "10", "seqid": 11, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -339,7 +339,7 @@ "id": "11", "seqid": 12, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", @@ -350,7 +350,7 @@ "id": "12", "seqid": 13, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "R", @@ -361,8 +361,8 @@ "id": "13", "seqid": 14, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "daA", "templateId": "daA___N,N-dimethyl-Adenine" diff --git a/api/tests/integration/tests/formats/ref/helm_no_left_ap.ket b/api/tests/integration/tests/formats/ref/helm_no_left_ap.ket index dd590f0ca2..182c86d35e 100644 --- a/api/tests/integration/tests/formats/ref/helm_no_left_ap.ket +++ b/api/tests/integration/tests/formats/ref/helm_no_left_ap.ket @@ -46,7 +46,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "C", diff --git a/api/tests/integration/tests/formats/ref/helm_peptide.ket b/api/tests/integration/tests/formats/ref/helm_peptide.ket index 9a04bf48df..82ee2872be 100644 --- a/api/tests/integration/tests/formats/ref/helm_peptide.ket +++ b/api/tests/integration/tests/formats/ref/helm_peptide.ket @@ -63,7 +63,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "meA", @@ -74,7 +74,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "C", diff --git a/api/tests/integration/tests/formats/ref/helm_rna_without_base.ket b/api/tests/integration/tests/formats/ref/helm_rna_without_base.ket index 1e08aacf95..8dfc9e4f3f 100644 --- a/api/tests/integration/tests/formats/ref/helm_rna_without_base.ket +++ b/api/tests/integration/tests/formats/ref/helm_rna_without_base.ket @@ -46,7 +46,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/helm_simple_rna.ket b/api/tests/integration/tests/formats/ref/helm_simple_rna.ket index 2d53709939..ffdb6e5014 100644 --- a/api/tests/integration/tests/formats/ref/helm_simple_rna.ket +++ b/api/tests/integration/tests/formats/ref/helm_simple_rna.ket @@ -230,7 +230,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -240,7 +240,7 @@ "id": "2", "seqid": 3, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -251,7 +251,7 @@ "id": "3", "seqid": 4, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "R", @@ -262,8 +262,8 @@ "id": "4", "seqid": 5, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -273,7 +273,7 @@ "id": "5", "seqid": 6, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -284,7 +284,7 @@ "id": "6", "seqid": 7, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "R", @@ -295,8 +295,8 @@ "id": "7", "seqid": 8, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -306,7 +306,7 @@ "id": "8", "seqid": 9, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -317,7 +317,7 @@ "id": "9", "seqid": 10, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "R", @@ -328,8 +328,8 @@ "id": "10", "seqid": 11, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -339,7 +339,7 @@ "id": "11", "seqid": 12, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", @@ -350,7 +350,7 @@ "id": "12", "seqid": 13, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "R", @@ -361,8 +361,8 @@ "id": "13", "seqid": 14, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/helm_smiles.ket b/api/tests/integration/tests/formats/ref/helm_smiles.ket index 98f7c5299a..f5ede5110a 100644 --- a/api/tests/integration/tests/formats/ref/helm_smiles.ket +++ b/api/tests/integration/tests/formats/ref/helm_smiles.ket @@ -97,7 +97,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "Mod0", @@ -108,7 +108,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "C", @@ -120,7 +120,7 @@ "seqid": 4, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "G", "templateId": "G___Glycine" @@ -130,8 +130,8 @@ "id": "4", "seqid": 5, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "Mod1", "templateId": "Mod1" @@ -141,8 +141,8 @@ "id": "5", "seqid": 6, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cysteine" diff --git a/api/tests/integration/tests/formats/ref/helm_smiles_sugar.ket b/api/tests/integration/tests/formats/ref/helm_smiles_sugar.ket index a94518b786..4934708930 100644 --- a/api/tests/integration/tests/formats/ref/helm_smiles_sugar.ket +++ b/api/tests/integration/tests/formats/ref/helm_smiles_sugar.ket @@ -64,7 +64,7 @@ "seqid": 2, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -74,7 +74,7 @@ "id": "2", "seqid": 3, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_32moera.ket b/api/tests/integration/tests/formats/ref/idt_32moera.ket index 7950a6fa70..dbe1ca55a6 100644 --- a/api/tests/integration/tests/formats/ref/idt_32moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_32moera.ket @@ -47,7 +47,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_52moera.ket b/api/tests/integration/tests/formats/ref/idt_52moera.ket index ccb75cedc4..4f1a8fe13f 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera.ket @@ -64,7 +64,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -74,7 +74,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_52moera_32moera.ket b/api/tests/integration/tests/formats/ref/idt_52moera_32moera.ket index 2005b51de8..229442ad86 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera_32moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera_32moera.ket @@ -92,7 +92,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -102,7 +102,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -113,7 +113,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -124,8 +124,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_52moera_i2moera.ket b/api/tests/integration/tests/formats/ref/idt_52moera_i2moera.ket index f0f48a3e88..9ca26a5b8e 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera_i2moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera_i2moera.ket @@ -106,7 +106,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -116,7 +116,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -127,7 +127,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -138,8 +138,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -149,7 +149,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_52moera_sp.ket b/api/tests/integration/tests/formats/ref/idt_52moera_sp.ket index 6751915cc1..9d6406a5e1 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera_sp.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera_sp.ket @@ -64,7 +64,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -74,7 +74,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", diff --git a/api/tests/integration/tests/formats/ref/idt_52moera_sp_32moera.ket b/api/tests/integration/tests/formats/ref/idt_52moera_sp_32moera.ket index 81cd0ec959..777db24ed5 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera_sp_32moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera_sp_32moera.ket @@ -92,7 +92,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -102,7 +102,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", @@ -113,7 +113,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -124,8 +124,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_52moera_sp_i2moera_sp.ket b/api/tests/integration/tests/formats/ref/idt_52moera_sp_i2moera_sp.ket index ea3652a433..caa5684410 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera_sp_i2moera_sp.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera_sp_i2moera_sp.ket @@ -106,7 +106,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -116,7 +116,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", @@ -127,7 +127,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -138,8 +138,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -149,7 +149,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "sP", diff --git a/api/tests/integration/tests/formats/ref/idt_52moera_with_3phos.ket b/api/tests/integration/tests/formats/ref/idt_52moera_with_3phos.ket index 25892f0f08..ecd5c705f8 100644 --- a/api/tests/integration/tests/formats/ref/idt_52moera_with_3phos.ket +++ b/api/tests/integration/tests/formats/ref/idt_52moera_with_3phos.ket @@ -78,7 +78,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -88,7 +88,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -99,7 +99,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_bases.ket b/api/tests/integration/tests/formats/ref/idt_bases.ket index e1172056bd..96a070e848 100644 --- a/api/tests/integration/tests/formats/ref/idt_bases.ket +++ b/api/tests/integration/tests/formats/ref/idt_bases.ket @@ -275,7 +275,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -285,7 +285,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -296,7 +296,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -307,8 +307,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -318,7 +318,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -329,7 +329,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -340,8 +340,8 @@ "id": "7", "seqid": 2, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -351,7 +351,7 @@ "id": "8", "seqid": 2, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -362,7 +362,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -373,8 +373,8 @@ "id": "10", "seqid": 3, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -384,7 +384,7 @@ "id": "11", "seqid": 3, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", @@ -395,7 +395,7 @@ "id": "12", "seqid": 4, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "dR", @@ -406,8 +406,8 @@ "id": "13", "seqid": 4, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -417,7 +417,7 @@ "id": "14", "seqid": 4, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "P", @@ -428,7 +428,7 @@ "id": "15", "seqid": 5, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "dR", @@ -439,8 +439,8 @@ "id": "16", "seqid": 5, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "In", "templateId": "In___Inosine" diff --git a/api/tests/integration/tests/formats/ref/idt_i2moera.ket b/api/tests/integration/tests/formats/ref/idt_i2moera.ket index ccb75cedc4..4f1a8fe13f 100644 --- a/api/tests/integration/tests/formats/ref/idt_i2moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_i2moera.ket @@ -64,7 +64,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -74,7 +74,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_i2moera_32moera.ket b/api/tests/integration/tests/formats/ref/idt_i2moera_32moera.ket index 2005b51de8..229442ad86 100644 --- a/api/tests/integration/tests/formats/ref/idt_i2moera_32moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_i2moera_32moera.ket @@ -92,7 +92,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -102,7 +102,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -113,7 +113,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -124,8 +124,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_i2moera_sp.ket b/api/tests/integration/tests/formats/ref/idt_i2moera_sp.ket index 6751915cc1..9d6406a5e1 100644 --- a/api/tests/integration/tests/formats/ref/idt_i2moera_sp.ket +++ b/api/tests/integration/tests/formats/ref/idt_i2moera_sp.ket @@ -64,7 +64,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -74,7 +74,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", diff --git a/api/tests/integration/tests/formats/ref/idt_i2moera_sp_32moera.ket b/api/tests/integration/tests/formats/ref/idt_i2moera_sp_32moera.ket index 81cd0ec959..777db24ed5 100644 --- a/api/tests/integration/tests/formats/ref/idt_i2moera_sp_32moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_i2moera_sp_32moera.ket @@ -92,7 +92,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -102,7 +102,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", @@ -113,7 +113,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -124,8 +124,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_i2moera_t.ket b/api/tests/integration/tests/formats/ref/idt_i2moera_t.ket index 879254e643..26d338536a 100644 --- a/api/tests/integration/tests/formats/ref/idt_i2moera_t.ket +++ b/api/tests/integration/tests/formats/ref/idt_i2moera_t.ket @@ -98,7 +98,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -108,7 +108,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -119,7 +119,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -130,8 +130,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" diff --git a/api/tests/integration/tests/formats/ref/idt_many_molecules.ket b/api/tests/integration/tests/formats/ref/idt_many_molecules.ket index a728fd3eb2..3b4846d9d4 100644 --- a/api/tests/integration/tests/formats/ref/idt_many_molecules.ket +++ b/api/tests/integration/tests/formats/ref/idt_many_molecules.ket @@ -584,7 +584,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -594,7 +594,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -605,7 +605,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -616,8 +616,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -627,7 +627,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -638,7 +638,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -649,8 +649,8 @@ "id": "7", "seqid": 2, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -660,7 +660,7 @@ "id": "8", "seqid": 2, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -671,7 +671,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -682,8 +682,8 @@ "id": "10", "seqid": 3, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -694,7 +694,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -2.000000 + "y": -3.000000 }, "alias": "MOE", "templateId": "MOE___2'-O-Methoxyethyl ribose" @@ -705,7 +705,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -3.000000 + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -715,8 +715,8 @@ "id": "13", "seqid": 0, "position": { - "x": 1.000000, - "y": -2.000000 + "x": 1.500000, + "y": -3.000000 }, "alias": "sP", "templateId": "sP___Phosporothioate" @@ -726,8 +726,8 @@ "id": "14", "seqid": 1, "position": { - "x": 2.000000, - "y": -2.000000 + "x": 3.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -737,8 +737,8 @@ "id": "15", "seqid": 1, "position": { - "x": 2.000000, - "y": -3.000000 + "x": 3.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -748,8 +748,8 @@ "id": "16", "seqid": 1, "position": { - "x": 3.000000, - "y": -2.000000 + "x": 4.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -759,8 +759,8 @@ "id": "17", "seqid": 2, "position": { - "x": 4.000000, - "y": -2.000000 + "x": 6.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -770,8 +770,8 @@ "id": "18", "seqid": 2, "position": { - "x": 4.000000, - "y": -3.000000 + "x": 6.000000, + "y": -4.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -781,8 +781,8 @@ "id": "19", "seqid": 2, "position": { - "x": 5.000000, - "y": -2.000000 + "x": 7.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -793,7 +793,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -4.000000 + "y": -6.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -804,7 +804,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -5.000000 + "y": -7.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -814,8 +814,8 @@ "id": "22", "seqid": 0, "position": { - "x": 1.000000, - "y": -4.000000 + "x": 1.500000, + "y": -6.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -825,8 +825,8 @@ "id": "23", "seqid": 1, "position": { - "x": 2.000000, - "y": -4.000000 + "x": 3.000000, + "y": -6.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -836,8 +836,8 @@ "id": "24", "seqid": 1, "position": { - "x": 2.000000, - "y": -5.000000 + "x": 3.000000, + "y": -7.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -847,8 +847,8 @@ "id": "25", "seqid": 1, "position": { - "x": 3.000000, - "y": -4.000000 + "x": 4.500000, + "y": -6.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -858,8 +858,8 @@ "id": "26", "seqid": 2, "position": { - "x": 4.000000, - "y": -4.000000 + "x": 6.000000, + "y": -6.000000 }, "alias": "MOE", "templateId": "MOE___2'-O-Methoxyethyl ribose" @@ -869,8 +869,8 @@ "id": "27", "seqid": 2, "position": { - "x": 4.000000, - "y": -5.000000 + "x": 6.000000, + "y": -7.500000 }, "alias": "5meC", "templateId": "5meC___5-methyl-cytidine" @@ -880,8 +880,8 @@ "id": "28", "seqid": 2, "position": { - "x": 5.000000, - "y": -4.000000 + "x": 7.500000, + "y": -6.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -891,8 +891,8 @@ "id": "29", "seqid": 3, "position": { - "x": 6.000000, - "y": -4.000000 + "x": 9.000000, + "y": -6.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -903,7 +903,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -6.000000 + "y": -9.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -914,7 +914,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -7.000000 + "y": -10.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -924,8 +924,8 @@ "id": "32", "seqid": 0, "position": { - "x": 1.000000, - "y": -6.000000 + "x": 1.500000, + "y": -9.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -935,8 +935,8 @@ "id": "33", "seqid": 1, "position": { - "x": 2.000000, - "y": -6.000000 + "x": 3.000000, + "y": -9.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -946,8 +946,8 @@ "id": "34", "seqid": 1, "position": { - "x": 2.000000, - "y": -7.000000 + "x": 3.000000, + "y": -10.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -957,8 +957,8 @@ "id": "35", "seqid": 1, "position": { - "x": 3.000000, - "y": -6.000000 + "x": 4.500000, + "y": -9.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -968,8 +968,8 @@ "id": "36", "seqid": 2, "position": { - "x": 4.000000, - "y": -6.000000 + "x": 6.000000, + "y": -9.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -979,8 +979,8 @@ "id": "37", "seqid": 2, "position": { - "x": 4.000000, - "y": -7.000000 + "x": 6.000000, + "y": -10.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -990,8 +990,8 @@ "id": "38", "seqid": 2, "position": { - "x": 5.000000, - "y": -6.000000 + "x": 7.500000, + "y": -9.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -1001,8 +1001,8 @@ "id": "39", "seqid": 3, "position": { - "x": 6.000000, - "y": -6.000000 + "x": 9.000000, + "y": -9.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -1012,8 +1012,8 @@ "id": "40", "seqid": 3, "position": { - "x": 6.000000, - "y": -7.000000 + "x": 9.000000, + "y": -10.500000 }, "alias": "G", "templateId": "G___Guanine" diff --git a/api/tests/integration/tests/formats/ref/idt_mixed.ket b/api/tests/integration/tests/formats/ref/idt_mixed.ket index fe0153d030..d189fdad83 100644 --- a/api/tests/integration/tests/formats/ref/idt_mixed.ket +++ b/api/tests/integration/tests/formats/ref/idt_mixed.ket @@ -173,7 +173,7 @@ "id": "1", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "LR", @@ -184,8 +184,8 @@ "id": "2", "seqid": 1, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -195,7 +195,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "sP", @@ -206,7 +206,7 @@ "id": "4", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "MOE", @@ -217,8 +217,8 @@ "id": "5", "seqid": 2, "position": { - "x": 3.000000, - "y": -1.000000 + "x": 4.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -228,7 +228,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "sP", @@ -239,7 +239,7 @@ "id": "7", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "R", @@ -250,8 +250,8 @@ "id": "8", "seqid": 3, "position": { - "x": 5.000000, - "y": -1.000000 + "x": 7.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -261,7 +261,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_mixed_custom.ket b/api/tests/integration/tests/formats/ref/idt_mixed_custom.ket index fe58232512..6b53c1170b 100644 --- a/api/tests/integration/tests/formats/ref/idt_mixed_custom.ket +++ b/api/tests/integration/tests/formats/ref/idt_mixed_custom.ket @@ -148,7 +148,7 @@ "id": "1", "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "seqid": 0, "alias": "(N1)", @@ -159,7 +159,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -170,7 +170,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -180,8 +180,8 @@ "type": "ambiguousMonomer", "id": "4", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 1, "alias": "(N1)", @@ -192,7 +192,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -203,7 +203,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -213,8 +213,8 @@ "type": "ambiguousMonomer", "id": "7", "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "seqid": 2, "alias": "N", diff --git a/api/tests/integration/tests/formats/ref/idt_mixed_std.ket b/api/tests/integration/tests/formats/ref/idt_mixed_std.ket index b5772f2c54..617bb63fb3 100644 --- a/api/tests/integration/tests/formats/ref/idt_mixed_std.ket +++ b/api/tests/integration/tests/formats/ref/idt_mixed_std.ket @@ -188,7 +188,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -198,7 +198,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -209,7 +209,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -219,8 +219,8 @@ "type": "ambiguousMonomer", "id": "4", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 1, "alias": "R", @@ -231,7 +231,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -242,7 +242,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -253,8 +253,8 @@ "id": "7", "seqid": 2, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -264,7 +264,7 @@ "id": "8", "seqid": 2, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -275,7 +275,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -285,8 +285,8 @@ "type": "ambiguousMonomer", "id": "10", "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "seqid": 3, "alias": "S", diff --git a/api/tests/integration/tests/formats/ref/idt_mod_phosphates.ket b/api/tests/integration/tests/formats/ref/idt_mod_phosphates.ket index e7bf9a0d9e..f83f1156b7 100644 --- a/api/tests/integration/tests/formats/ref/idt_mod_phosphates.ket +++ b/api/tests/integration/tests/formats/ref/idt_mod_phosphates.ket @@ -91,7 +91,7 @@ "id": "1", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "MOE", @@ -102,8 +102,8 @@ "id": "2", "seqid": 1, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "5meC", "templateId": "5meC___5-methyl-cytidine" @@ -113,7 +113,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "P", @@ -124,7 +124,7 @@ "id": "4", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_modifications.ket b/api/tests/integration/tests/formats/ref/idt_modifications.ket index 59b45dd7e9..b81ac48312 100644 --- a/api/tests/integration/tests/formats/ref/idt_modifications.ket +++ b/api/tests/integration/tests/formats/ref/idt_modifications.ket @@ -137,7 +137,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -147,7 +147,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", @@ -158,7 +158,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -169,8 +169,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -180,7 +180,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -191,7 +191,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "MOE", @@ -202,8 +202,8 @@ "id": "7", "seqid": 2, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_prefix_suffix.ket b/api/tests/integration/tests/formats/ref/idt_prefix_suffix.ket index 36c6060480..b8606071db 100644 --- a/api/tests/integration/tests/formats/ref/idt_prefix_suffix.ket +++ b/api/tests/integration/tests/formats/ref/idt_prefix_suffix.ket @@ -329,7 +329,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -339,7 +339,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "sP", @@ -350,7 +350,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "R", @@ -361,8 +361,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -372,7 +372,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "sP", @@ -383,7 +383,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "LR", @@ -394,8 +394,8 @@ "id": "7", "seqid": 2, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -405,7 +405,7 @@ "id": "8", "seqid": 2, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "sP", @@ -416,7 +416,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -427,8 +427,8 @@ "id": "10", "seqid": 3, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -438,7 +438,7 @@ "id": "11", "seqid": 3, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "sP", @@ -449,7 +449,7 @@ "id": "12", "seqid": 4, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "LR", @@ -460,8 +460,8 @@ "id": "13", "seqid": 4, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -471,7 +471,7 @@ "id": "14", "seqid": 4, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "P", @@ -482,7 +482,7 @@ "id": "15", "seqid": 5, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "R", @@ -493,8 +493,8 @@ "id": "16", "seqid": 5, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "In", "templateId": "In___Inosine" @@ -504,7 +504,7 @@ "id": "17", "seqid": 5, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "P", @@ -515,7 +515,7 @@ "id": "18", "seqid": 6, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "mR", @@ -526,8 +526,8 @@ "id": "19", "seqid": 6, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_rna_dna_mixed_custom.ket b/api/tests/integration/tests/formats/ref/idt_rna_dna_mixed_custom.ket index 3ae74b2caa..9591afedd6 100644 --- a/api/tests/integration/tests/formats/ref/idt_rna_dna_mixed_custom.ket +++ b/api/tests/integration/tests/formats/ref/idt_rna_dna_mixed_custom.ket @@ -100,7 +100,7 @@ "id": "1", "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "seqid": 0, "alias": "(R1)", @@ -111,7 +111,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -122,7 +122,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -132,8 +132,8 @@ "type": "ambiguousMonomer", "id": "4", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 1, "alias": "(R1)", diff --git a/api/tests/integration/tests/formats/ref/idt_single_nucleoside.ket b/api/tests/integration/tests/formats/ref/idt_single_nucleoside.ket index 1dfc487465..5b8c2c589d 100644 --- a/api/tests/integration/tests/formats/ref/idt_single_nucleoside.ket +++ b/api/tests/integration/tests/formats/ref/idt_single_nucleoside.ket @@ -47,7 +47,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" diff --git a/api/tests/integration/tests/formats/ref/idt_std_phosphates.ket b/api/tests/integration/tests/formats/ref/idt_std_phosphates.ket index 0a4c001d24..38ab194dd9 100644 --- a/api/tests/integration/tests/formats/ref/idt_std_phosphates.ket +++ b/api/tests/integration/tests/formats/ref/idt_std_phosphates.ket @@ -167,7 +167,7 @@ "id": "1", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "dR", @@ -178,8 +178,8 @@ "id": "2", "seqid": 1, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -189,7 +189,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "P", @@ -200,7 +200,7 @@ "id": "4", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "dR", @@ -211,8 +211,8 @@ "id": "5", "seqid": 2, "position": { - "x": 3.000000, - "y": -1.000000 + "x": 4.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -222,7 +222,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "P", @@ -233,7 +233,7 @@ "id": "7", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "dR", @@ -244,8 +244,8 @@ "id": "8", "seqid": 3, "position": { - "x": 5.000000, - "y": -1.000000 + "x": 7.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -255,7 +255,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_t_i2moera.ket b/api/tests/integration/tests/formats/ref/idt_t_i2moera.ket index c61170c128..dca32d3ef4 100644 --- a/api/tests/integration/tests/formats/ref/idt_t_i2moera.ket +++ b/api/tests/integration/tests/formats/ref/idt_t_i2moera.ket @@ -112,7 +112,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -122,7 +122,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -133,7 +133,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "MOE", @@ -144,8 +144,8 @@ "id": "4", "seqid": 1, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -155,7 +155,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/idt_unresolved.ket b/api/tests/integration/tests/formats/ref/idt_unresolved.ket index 5eac1c04d2..c9a5314f99 100644 --- a/api/tests/integration/tests/formats/ref/idt_unresolved.ket +++ b/api/tests/integration/tests/formats/ref/idt_unresolved.ket @@ -46,7 +46,7 @@ "id": "1", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "unr2", diff --git a/api/tests/integration/tests/formats/ref/idt_unresolved_many.ket b/api/tests/integration/tests/formats/ref/idt_unresolved_many.ket index bca41dd547..5d26696f72 100644 --- a/api/tests/integration/tests/formats/ref/idt_unresolved_many.ket +++ b/api/tests/integration/tests/formats/ref/idt_unresolved_many.ket @@ -409,7 +409,7 @@ "id": "1", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "dR", @@ -420,8 +420,8 @@ "id": "2", "seqid": 1, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -431,7 +431,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "P", @@ -442,7 +442,7 @@ "id": "4", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "unr1", @@ -453,7 +453,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -464,8 +464,8 @@ "id": "6", "seqid": 3, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -475,7 +475,7 @@ "id": "7", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -486,7 +486,7 @@ "id": "8", "seqid": 4, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "unr2", @@ -497,7 +497,7 @@ "id": "9", "seqid": 5, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "dR", @@ -508,8 +508,8 @@ "id": "10", "seqid": 5, "position": { - "x": 7.000000, - "y": -1.000000 + "x": 10.500000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -519,7 +519,7 @@ "id": "11", "seqid": 5, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "P", @@ -530,7 +530,7 @@ "id": "12", "seqid": 6, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "dR", @@ -541,8 +541,8 @@ "id": "13", "seqid": 6, "position": { - "x": 9.000000, - "y": -1.000000 + "x": 13.500000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -552,7 +552,7 @@ "id": "14", "seqid": 6, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "P", @@ -563,7 +563,7 @@ "id": "15", "seqid": 7, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "dR", @@ -574,8 +574,8 @@ "id": "16", "seqid": 7, "position": { - "x": 11.000000, - "y": -1.000000 + "x": 16.500000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -585,7 +585,7 @@ "id": "17", "seqid": 7, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "P", @@ -596,7 +596,7 @@ "id": "18", "seqid": 8, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "dR", @@ -607,8 +607,8 @@ "id": "19", "seqid": 8, "position": { - "x": 13.000000, - "y": -1.000000 + "x": 19.500000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -618,7 +618,7 @@ "id": "20", "seqid": 8, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "P", @@ -629,7 +629,7 @@ "id": "21", "seqid": 9, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "unr3", @@ -640,7 +640,7 @@ "id": "22", "seqid": 10, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "dR", @@ -651,8 +651,8 @@ "id": "23", "seqid": 10, "position": { - "x": 16.000000, - "y": -1.000000 + "x": 24.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -662,7 +662,7 @@ "id": "24", "seqid": 10, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "P", @@ -673,7 +673,7 @@ "id": "25", "seqid": 11, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "unr4", diff --git a/api/tests/integration/tests/formats/ref/idt_unsplit.ket b/api/tests/integration/tests/formats/ref/idt_unsplit.ket index 841324bb7d..3ac895a672 100644 --- a/api/tests/integration/tests/formats/ref/idt_unsplit.ket +++ b/api/tests/integration/tests/formats/ref/idt_unsplit.ket @@ -57,7 +57,7 @@ "id": "1", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "UNSPLIT", @@ -68,7 +68,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "UNSPLIT", diff --git a/api/tests/integration/tests/formats/ref/multiseq.ket b/api/tests/integration/tests/formats/ref/multiseq.ket index de7b8081c6..9d9af529c1 100644 --- a/api/tests/integration/tests/formats/ref/multiseq.ket +++ b/api/tests/integration/tests/formats/ref/multiseq.ket @@ -5872,7 +5872,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5882,7 +5882,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -5893,8 +5893,8 @@ "id": "3", "seqid": 2, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5904,7 +5904,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -5915,7 +5915,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -5926,8 +5926,8 @@ "id": "6", "seqid": 3, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5937,7 +5937,7 @@ "id": "7", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -5948,7 +5948,7 @@ "id": "8", "seqid": 4, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -5959,8 +5959,8 @@ "id": "9", "seqid": 4, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5970,7 +5970,7 @@ "id": "10", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -5981,7 +5981,7 @@ "id": "11", "seqid": 5, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "dR", @@ -5992,8 +5992,8 @@ "id": "12", "seqid": 5, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6003,7 +6003,7 @@ "id": "13", "seqid": 4, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", @@ -6014,7 +6014,7 @@ "id": "14", "seqid": 6, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "dR", @@ -6025,8 +6025,8 @@ "id": "15", "seqid": 6, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6036,7 +6036,7 @@ "id": "16", "seqid": 5, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "P", @@ -6047,7 +6047,7 @@ "id": "17", "seqid": 7, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "dR", @@ -6058,8 +6058,8 @@ "id": "18", "seqid": 7, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6069,7 +6069,7 @@ "id": "19", "seqid": 6, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "P", @@ -6080,7 +6080,7 @@ "id": "20", "seqid": 8, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "dR", @@ -6091,8 +6091,8 @@ "id": "21", "seqid": 8, "position": { - "x": 14.000000, - "y": -1.000000 + "x": 21.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6102,7 +6102,7 @@ "id": "22", "seqid": 7, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "P", @@ -6113,7 +6113,7 @@ "id": "23", "seqid": 9, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "dR", @@ -6124,8 +6124,8 @@ "id": "24", "seqid": 9, "position": { - "x": 16.000000, - "y": -1.000000 + "x": 24.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6135,7 +6135,7 @@ "id": "25", "seqid": 8, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "P", @@ -6146,7 +6146,7 @@ "id": "26", "seqid": 10, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "dR", @@ -6157,8 +6157,8 @@ "id": "27", "seqid": 10, "position": { - "x": 18.000000, - "y": -1.000000 + "x": 27.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6168,7 +6168,7 @@ "id": "28", "seqid": 9, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "P", @@ -6179,7 +6179,7 @@ "id": "29", "seqid": 11, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "dR", @@ -6190,8 +6190,8 @@ "id": "30", "seqid": 11, "position": { - "x": 20.000000, - "y": -1.000000 + "x": 30.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6201,7 +6201,7 @@ "id": "31", "seqid": 10, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "P", @@ -6212,7 +6212,7 @@ "id": "32", "seqid": 12, "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "alias": "dR", @@ -6223,8 +6223,8 @@ "id": "33", "seqid": 12, "position": { - "x": 22.000000, - "y": -1.000000 + "x": 33.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6234,7 +6234,7 @@ "id": "34", "seqid": 11, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "P", @@ -6245,7 +6245,7 @@ "id": "35", "seqid": 13, "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "alias": "dR", @@ -6256,8 +6256,8 @@ "id": "36", "seqid": 13, "position": { - "x": 24.000000, - "y": -1.000000 + "x": 36.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6267,7 +6267,7 @@ "id": "37", "seqid": 12, "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "alias": "P", @@ -6278,7 +6278,7 @@ "id": "38", "seqid": 14, "position": { - "x": 26.000000, + "x": 39.000000, "y": -0.000000 }, "alias": "dR", @@ -6289,8 +6289,8 @@ "id": "39", "seqid": 14, "position": { - "x": 26.000000, - "y": -1.000000 + "x": 39.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6300,7 +6300,7 @@ "id": "40", "seqid": 13, "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "alias": "P", @@ -6311,7 +6311,7 @@ "id": "41", "seqid": 15, "position": { - "x": 28.000000, + "x": 42.000000, "y": -0.000000 }, "alias": "dR", @@ -6322,8 +6322,8 @@ "id": "42", "seqid": 15, "position": { - "x": 28.000000, - "y": -1.000000 + "x": 42.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6333,7 +6333,7 @@ "id": "43", "seqid": 14, "position": { - "x": 27.000000, + "x": 40.500000, "y": -0.000000 }, "alias": "P", @@ -6344,7 +6344,7 @@ "id": "44", "seqid": 16, "position": { - "x": 30.000000, + "x": 45.000000, "y": -0.000000 }, "alias": "dR", @@ -6355,8 +6355,8 @@ "id": "45", "seqid": 16, "position": { - "x": 30.000000, - "y": -1.000000 + "x": 45.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6366,7 +6366,7 @@ "id": "46", "seqid": 15, "position": { - "x": 29.000000, + "x": 43.500000, "y": -0.000000 }, "alias": "P", @@ -6377,7 +6377,7 @@ "id": "47", "seqid": 17, "position": { - "x": 32.000000, + "x": 48.000000, "y": -0.000000 }, "alias": "dR", @@ -6388,8 +6388,8 @@ "id": "48", "seqid": 17, "position": { - "x": 32.000000, - "y": -1.000000 + "x": 48.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6399,7 +6399,7 @@ "id": "49", "seqid": 16, "position": { - "x": 31.000000, + "x": 46.500000, "y": -0.000000 }, "alias": "P", @@ -6410,7 +6410,7 @@ "id": "50", "seqid": 18, "position": { - "x": 34.000000, + "x": 51.000000, "y": -0.000000 }, "alias": "dR", @@ -6421,8 +6421,8 @@ "id": "51", "seqid": 18, "position": { - "x": 34.000000, - "y": -1.000000 + "x": 51.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6432,7 +6432,7 @@ "id": "52", "seqid": 17, "position": { - "x": 33.000000, + "x": 49.500000, "y": -0.000000 }, "alias": "P", @@ -6443,7 +6443,7 @@ "id": "53", "seqid": 19, "position": { - "x": 36.000000, + "x": 54.000000, "y": -0.000000 }, "alias": "dR", @@ -6454,8 +6454,8 @@ "id": "54", "seqid": 19, "position": { - "x": 36.000000, - "y": -1.000000 + "x": 54.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6465,7 +6465,7 @@ "id": "55", "seqid": 18, "position": { - "x": 35.000000, + "x": 52.500000, "y": -0.000000 }, "alias": "P", @@ -6476,7 +6476,7 @@ "id": "56", "seqid": 20, "position": { - "x": 38.000000, + "x": 57.000000, "y": -0.000000 }, "alias": "dR", @@ -6487,8 +6487,8 @@ "id": "57", "seqid": 20, "position": { - "x": 38.000000, - "y": -1.000000 + "x": 57.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6498,7 +6498,7 @@ "id": "58", "seqid": 19, "position": { - "x": 37.000000, + "x": 55.500000, "y": -0.000000 }, "alias": "P", @@ -6509,7 +6509,7 @@ "id": "59", "seqid": 21, "position": { - "x": 40.000000, + "x": 60.000000, "y": -0.000000 }, "alias": "dR", @@ -6520,8 +6520,8 @@ "id": "60", "seqid": 21, "position": { - "x": 40.000000, - "y": -1.000000 + "x": 60.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6531,7 +6531,7 @@ "id": "61", "seqid": 20, "position": { - "x": 39.000000, + "x": 58.500000, "y": -0.000000 }, "alias": "P", @@ -6542,7 +6542,7 @@ "id": "62", "seqid": 22, "position": { - "x": 42.000000, + "x": 63.000000, "y": -0.000000 }, "alias": "dR", @@ -6553,8 +6553,8 @@ "id": "63", "seqid": 22, "position": { - "x": 42.000000, - "y": -1.000000 + "x": 63.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6564,7 +6564,7 @@ "id": "64", "seqid": 21, "position": { - "x": 41.000000, + "x": 61.500000, "y": -0.000000 }, "alias": "P", @@ -6575,7 +6575,7 @@ "id": "65", "seqid": 23, "position": { - "x": 44.000000, + "x": 66.000000, "y": -0.000000 }, "alias": "dR", @@ -6586,8 +6586,8 @@ "id": "66", "seqid": 23, "position": { - "x": 44.000000, - "y": -1.000000 + "x": 66.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6597,7 +6597,7 @@ "id": "67", "seqid": 22, "position": { - "x": 43.000000, + "x": 64.500000, "y": -0.000000 }, "alias": "P", @@ -6608,7 +6608,7 @@ "id": "68", "seqid": 24, "position": { - "x": 46.000000, + "x": 69.000000, "y": -0.000000 }, "alias": "dR", @@ -6619,8 +6619,8 @@ "id": "69", "seqid": 24, "position": { - "x": 46.000000, - "y": -1.000000 + "x": 69.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6630,7 +6630,7 @@ "id": "70", "seqid": 23, "position": { - "x": 45.000000, + "x": 67.500000, "y": -0.000000 }, "alias": "P", @@ -6641,7 +6641,7 @@ "id": "71", "seqid": 25, "position": { - "x": 48.000000, + "x": 72.000000, "y": -0.000000 }, "alias": "dR", @@ -6652,8 +6652,8 @@ "id": "72", "seqid": 25, "position": { - "x": 48.000000, - "y": -1.000000 + "x": 72.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6663,7 +6663,7 @@ "id": "73", "seqid": 24, "position": { - "x": 47.000000, + "x": 70.500000, "y": -0.000000 }, "alias": "P", @@ -6674,7 +6674,7 @@ "id": "74", "seqid": 26, "position": { - "x": 50.000000, + "x": 75.000000, "y": -0.000000 }, "alias": "dR", @@ -6685,8 +6685,8 @@ "id": "75", "seqid": 26, "position": { - "x": 50.000000, - "y": -1.000000 + "x": 75.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6696,7 +6696,7 @@ "id": "76", "seqid": 25, "position": { - "x": 49.000000, + "x": 73.500000, "y": -0.000000 }, "alias": "P", @@ -6707,7 +6707,7 @@ "id": "77", "seqid": 27, "position": { - "x": 52.000000, + "x": 78.000000, "y": -0.000000 }, "alias": "dR", @@ -6718,8 +6718,8 @@ "id": "78", "seqid": 27, "position": { - "x": 52.000000, - "y": -1.000000 + "x": 78.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6729,7 +6729,7 @@ "id": "79", "seqid": 26, "position": { - "x": 51.000000, + "x": 76.500000, "y": -0.000000 }, "alias": "P", @@ -6740,7 +6740,7 @@ "id": "80", "seqid": 28, "position": { - "x": 54.000000, + "x": 81.000000, "y": -0.000000 }, "alias": "dR", @@ -6751,8 +6751,8 @@ "id": "81", "seqid": 28, "position": { - "x": 54.000000, - "y": -1.000000 + "x": 81.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6762,7 +6762,7 @@ "id": "82", "seqid": 27, "position": { - "x": 53.000000, + "x": 79.500000, "y": -0.000000 }, "alias": "P", @@ -6773,7 +6773,7 @@ "id": "83", "seqid": 29, "position": { - "x": 56.000000, + "x": 84.000000, "y": -0.000000 }, "alias": "dR", @@ -6784,8 +6784,8 @@ "id": "84", "seqid": 29, "position": { - "x": 56.000000, - "y": -1.000000 + "x": 84.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6795,7 +6795,7 @@ "id": "85", "seqid": 28, "position": { - "x": 55.000000, + "x": 82.500000, "y": -0.000000 }, "alias": "P", @@ -6806,7 +6806,7 @@ "id": "86", "seqid": 30, "position": { - "x": 58.000000, + "x": 87.000000, "y": -0.000000 }, "alias": "dR", @@ -6817,8 +6817,8 @@ "id": "87", "seqid": 30, "position": { - "x": 58.000000, - "y": -1.000000 + "x": 87.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6828,7 +6828,7 @@ "id": "88", "seqid": 29, "position": { - "x": 57.000000, + "x": 85.500000, "y": -0.000000 }, "alias": "P", @@ -6839,7 +6839,7 @@ "id": "89", "seqid": 31, "position": { - "x": 60.000000, + "x": 90.000000, "y": -0.000000 }, "alias": "dR", @@ -6850,8 +6850,8 @@ "id": "90", "seqid": 31, "position": { - "x": 60.000000, - "y": -1.000000 + "x": 90.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6861,7 +6861,7 @@ "id": "91", "seqid": 30, "position": { - "x": 59.000000, + "x": 88.500000, "y": -0.000000 }, "alias": "P", @@ -6872,7 +6872,7 @@ "id": "92", "seqid": 32, "position": { - "x": 62.000000, + "x": 93.000000, "y": -0.000000 }, "alias": "dR", @@ -6883,8 +6883,8 @@ "id": "93", "seqid": 32, "position": { - "x": 62.000000, - "y": -1.000000 + "x": 93.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6894,7 +6894,7 @@ "id": "94", "seqid": 31, "position": { - "x": 61.000000, + "x": 91.500000, "y": -0.000000 }, "alias": "P", @@ -6905,7 +6905,7 @@ "id": "95", "seqid": 33, "position": { - "x": 64.000000, + "x": 96.000000, "y": -0.000000 }, "alias": "dR", @@ -6916,8 +6916,8 @@ "id": "96", "seqid": 33, "position": { - "x": 64.000000, - "y": -1.000000 + "x": 96.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6927,7 +6927,7 @@ "id": "97", "seqid": 32, "position": { - "x": 63.000000, + "x": 94.500000, "y": -0.000000 }, "alias": "P", @@ -6938,7 +6938,7 @@ "id": "98", "seqid": 34, "position": { - "x": 66.000000, + "x": 99.000000, "y": -0.000000 }, "alias": "dR", @@ -6949,8 +6949,8 @@ "id": "99", "seqid": 34, "position": { - "x": 66.000000, - "y": -1.000000 + "x": 99.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6960,7 +6960,7 @@ "id": "100", "seqid": 33, "position": { - "x": 65.000000, + "x": 97.500000, "y": -0.000000 }, "alias": "P", @@ -6971,7 +6971,7 @@ "id": "101", "seqid": 35, "position": { - "x": 68.000000, + "x": 102.000000, "y": -0.000000 }, "alias": "dR", @@ -6982,8 +6982,8 @@ "id": "102", "seqid": 35, "position": { - "x": 68.000000, - "y": -1.000000 + "x": 102.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6993,7 +6993,7 @@ "id": "103", "seqid": 34, "position": { - "x": 67.000000, + "x": 100.500000, "y": -0.000000 }, "alias": "P", @@ -7004,7 +7004,7 @@ "id": "104", "seqid": 36, "position": { - "x": 70.000000, + "x": 105.000000, "y": -0.000000 }, "alias": "dR", @@ -7015,8 +7015,8 @@ "id": "105", "seqid": 36, "position": { - "x": 70.000000, - "y": -1.000000 + "x": 105.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7026,7 +7026,7 @@ "id": "106", "seqid": 35, "position": { - "x": 69.000000, + "x": 103.500000, "y": -0.000000 }, "alias": "P", @@ -7037,7 +7037,7 @@ "id": "107", "seqid": 37, "position": { - "x": 72.000000, + "x": 108.000000, "y": -0.000000 }, "alias": "dR", @@ -7048,8 +7048,8 @@ "id": "108", "seqid": 37, "position": { - "x": 72.000000, - "y": -1.000000 + "x": 108.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7059,7 +7059,7 @@ "id": "109", "seqid": 36, "position": { - "x": 71.000000, + "x": 106.500000, "y": -0.000000 }, "alias": "P", @@ -7070,7 +7070,7 @@ "id": "110", "seqid": 38, "position": { - "x": 74.000000, + "x": 111.000000, "y": -0.000000 }, "alias": "dR", @@ -7081,8 +7081,8 @@ "id": "111", "seqid": 38, "position": { - "x": 74.000000, - "y": -1.000000 + "x": 111.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7092,7 +7092,7 @@ "id": "112", "seqid": 37, "position": { - "x": 73.000000, + "x": 109.500000, "y": -0.000000 }, "alias": "P", @@ -7103,7 +7103,7 @@ "id": "113", "seqid": 39, "position": { - "x": 76.000000, + "x": 114.000000, "y": -0.000000 }, "alias": "dR", @@ -7114,8 +7114,8 @@ "id": "114", "seqid": 39, "position": { - "x": 76.000000, - "y": -1.000000 + "x": 114.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7125,7 +7125,7 @@ "id": "115", "seqid": 38, "position": { - "x": 75.000000, + "x": 112.500000, "y": -0.000000 }, "alias": "P", @@ -7136,7 +7136,7 @@ "id": "116", "seqid": 40, "position": { - "x": 78.000000, + "x": 117.000000, "y": -0.000000 }, "alias": "dR", @@ -7147,8 +7147,8 @@ "id": "117", "seqid": 40, "position": { - "x": 78.000000, - "y": -1.000000 + "x": 117.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7158,7 +7158,7 @@ "id": "118", "seqid": 39, "position": { - "x": 77.000000, + "x": 115.500000, "y": -0.000000 }, "alias": "P", @@ -7169,7 +7169,7 @@ "id": "119", "seqid": 41, "position": { - "x": 80.000000, + "x": 120.000000, "y": -0.000000 }, "alias": "dR", @@ -7180,8 +7180,8 @@ "id": "120", "seqid": 41, "position": { - "x": 80.000000, - "y": -1.000000 + "x": 120.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7191,7 +7191,7 @@ "id": "121", "seqid": 40, "position": { - "x": 79.000000, + "x": 118.500000, "y": -0.000000 }, "alias": "P", @@ -7202,7 +7202,7 @@ "id": "122", "seqid": 42, "position": { - "x": 82.000000, + "x": 123.000000, "y": -0.000000 }, "alias": "dR", @@ -7213,8 +7213,8 @@ "id": "123", "seqid": 42, "position": { - "x": 82.000000, - "y": -1.000000 + "x": 123.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7224,7 +7224,7 @@ "id": "124", "seqid": 41, "position": { - "x": 81.000000, + "x": 121.500000, "y": -0.000000 }, "alias": "P", @@ -7235,7 +7235,7 @@ "id": "125", "seqid": 43, "position": { - "x": 84.000000, + "x": 126.000000, "y": -0.000000 }, "alias": "dR", @@ -7246,8 +7246,8 @@ "id": "126", "seqid": 43, "position": { - "x": 84.000000, - "y": -1.000000 + "x": 126.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7257,7 +7257,7 @@ "id": "127", "seqid": 42, "position": { - "x": 83.000000, + "x": 124.500000, "y": -0.000000 }, "alias": "P", @@ -7268,7 +7268,7 @@ "id": "128", "seqid": 44, "position": { - "x": 86.000000, + "x": 129.000000, "y": -0.000000 }, "alias": "dR", @@ -7279,8 +7279,8 @@ "id": "129", "seqid": 44, "position": { - "x": 86.000000, - "y": -1.000000 + "x": 129.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7290,7 +7290,7 @@ "id": "130", "seqid": 43, "position": { - "x": 85.000000, + "x": 127.500000, "y": -0.000000 }, "alias": "P", @@ -7301,7 +7301,7 @@ "id": "131", "seqid": 45, "position": { - "x": 88.000000, + "x": 132.000000, "y": -0.000000 }, "alias": "dR", @@ -7312,8 +7312,8 @@ "id": "132", "seqid": 45, "position": { - "x": 88.000000, - "y": -1.000000 + "x": 132.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7323,7 +7323,7 @@ "id": "133", "seqid": 44, "position": { - "x": 87.000000, + "x": 130.500000, "y": -0.000000 }, "alias": "P", @@ -7334,7 +7334,7 @@ "id": "134", "seqid": 46, "position": { - "x": 90.000000, + "x": 135.000000, "y": -0.000000 }, "alias": "dR", @@ -7345,8 +7345,8 @@ "id": "135", "seqid": 46, "position": { - "x": 90.000000, - "y": -1.000000 + "x": 135.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7356,7 +7356,7 @@ "id": "136", "seqid": 45, "position": { - "x": 89.000000, + "x": 133.500000, "y": -0.000000 }, "alias": "P", @@ -7367,7 +7367,7 @@ "id": "137", "seqid": 47, "position": { - "x": 92.000000, + "x": 138.000000, "y": -0.000000 }, "alias": "dR", @@ -7378,8 +7378,8 @@ "id": "138", "seqid": 47, "position": { - "x": 92.000000, - "y": -1.000000 + "x": 138.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7389,7 +7389,7 @@ "id": "139", "seqid": 46, "position": { - "x": 91.000000, + "x": 136.500000, "y": -0.000000 }, "alias": "P", @@ -7400,7 +7400,7 @@ "id": "140", "seqid": 48, "position": { - "x": 94.000000, + "x": 141.000000, "y": -0.000000 }, "alias": "dR", @@ -7411,8 +7411,8 @@ "id": "141", "seqid": 48, "position": { - "x": 94.000000, - "y": -1.000000 + "x": 141.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7422,7 +7422,7 @@ "id": "142", "seqid": 47, "position": { - "x": 93.000000, + "x": 139.500000, "y": -0.000000 }, "alias": "P", @@ -7433,7 +7433,7 @@ "id": "143", "seqid": 49, "position": { - "x": 96.000000, + "x": 144.000000, "y": -0.000000 }, "alias": "dR", @@ -7444,8 +7444,8 @@ "id": "144", "seqid": 49, "position": { - "x": 96.000000, - "y": -1.000000 + "x": 144.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7455,7 +7455,7 @@ "id": "145", "seqid": 48, "position": { - "x": 95.000000, + "x": 142.500000, "y": -0.000000 }, "alias": "P", @@ -7466,7 +7466,7 @@ "id": "146", "seqid": 50, "position": { - "x": 98.000000, + "x": 147.000000, "y": -0.000000 }, "alias": "dR", @@ -7477,8 +7477,8 @@ "id": "147", "seqid": 50, "position": { - "x": 98.000000, - "y": -1.000000 + "x": 147.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7488,7 +7488,7 @@ "id": "148", "seqid": 49, "position": { - "x": 97.000000, + "x": 145.500000, "y": -0.000000 }, "alias": "P", @@ -7499,7 +7499,7 @@ "id": "149", "seqid": 51, "position": { - "x": 100.000000, + "x": 150.000000, "y": -0.000000 }, "alias": "dR", @@ -7510,8 +7510,8 @@ "id": "150", "seqid": 51, "position": { - "x": 100.000000, - "y": -1.000000 + "x": 150.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7521,7 +7521,7 @@ "id": "151", "seqid": 50, "position": { - "x": 99.000000, + "x": 148.500000, "y": -0.000000 }, "alias": "P", @@ -7532,7 +7532,7 @@ "id": "152", "seqid": 52, "position": { - "x": 102.000000, + "x": 153.000000, "y": -0.000000 }, "alias": "dR", @@ -7543,8 +7543,8 @@ "id": "153", "seqid": 52, "position": { - "x": 102.000000, - "y": -1.000000 + "x": 153.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7554,7 +7554,7 @@ "id": "154", "seqid": 51, "position": { - "x": 101.000000, + "x": 151.500000, "y": -0.000000 }, "alias": "P", @@ -7565,7 +7565,7 @@ "id": "155", "seqid": 53, "position": { - "x": 104.000000, + "x": 156.000000, "y": -0.000000 }, "alias": "dR", @@ -7576,8 +7576,8 @@ "id": "156", "seqid": 53, "position": { - "x": 104.000000, - "y": -1.000000 + "x": 156.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7587,7 +7587,7 @@ "id": "157", "seqid": 52, "position": { - "x": 103.000000, + "x": 154.500000, "y": -0.000000 }, "alias": "P", @@ -7598,7 +7598,7 @@ "id": "158", "seqid": 54, "position": { - "x": 106.000000, + "x": 159.000000, "y": -0.000000 }, "alias": "dR", @@ -7609,8 +7609,8 @@ "id": "159", "seqid": 54, "position": { - "x": 106.000000, - "y": -1.000000 + "x": 159.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7620,7 +7620,7 @@ "id": "160", "seqid": 53, "position": { - "x": 105.000000, + "x": 157.500000, "y": -0.000000 }, "alias": "P", @@ -7631,7 +7631,7 @@ "id": "161", "seqid": 55, "position": { - "x": 108.000000, + "x": 162.000000, "y": -0.000000 }, "alias": "dR", @@ -7642,8 +7642,8 @@ "id": "162", "seqid": 55, "position": { - "x": 108.000000, - "y": -1.000000 + "x": 162.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7653,7 +7653,7 @@ "id": "163", "seqid": 54, "position": { - "x": 107.000000, + "x": 160.500000, "y": -0.000000 }, "alias": "P", @@ -7664,7 +7664,7 @@ "id": "164", "seqid": 56, "position": { - "x": 110.000000, + "x": 165.000000, "y": -0.000000 }, "alias": "dR", @@ -7675,8 +7675,8 @@ "id": "165", "seqid": 56, "position": { - "x": 110.000000, - "y": -1.000000 + "x": 165.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7686,7 +7686,7 @@ "id": "166", "seqid": 55, "position": { - "x": 109.000000, + "x": 163.500000, "y": -0.000000 }, "alias": "P", @@ -7697,7 +7697,7 @@ "id": "167", "seqid": 57, "position": { - "x": 112.000000, + "x": 168.000000, "y": -0.000000 }, "alias": "dR", @@ -7708,8 +7708,8 @@ "id": "168", "seqid": 57, "position": { - "x": 112.000000, - "y": -1.000000 + "x": 168.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7719,7 +7719,7 @@ "id": "169", "seqid": 56, "position": { - "x": 111.000000, + "x": 166.500000, "y": -0.000000 }, "alias": "P", @@ -7730,7 +7730,7 @@ "id": "170", "seqid": 58, "position": { - "x": 114.000000, + "x": 171.000000, "y": -0.000000 }, "alias": "dR", @@ -7741,8 +7741,8 @@ "id": "171", "seqid": 58, "position": { - "x": 114.000000, - "y": -1.000000 + "x": 171.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7752,7 +7752,7 @@ "id": "172", "seqid": 57, "position": { - "x": 113.000000, + "x": 169.500000, "y": -0.000000 }, "alias": "P", @@ -7763,7 +7763,7 @@ "id": "173", "seqid": 59, "position": { - "x": 116.000000, + "x": 174.000000, "y": -0.000000 }, "alias": "dR", @@ -7774,8 +7774,8 @@ "id": "174", "seqid": 59, "position": { - "x": 116.000000, - "y": -1.000000 + "x": 174.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7785,7 +7785,7 @@ "id": "175", "seqid": 58, "position": { - "x": 115.000000, + "x": 172.500000, "y": -0.000000 }, "alias": "P", @@ -7796,7 +7796,7 @@ "id": "176", "seqid": 60, "position": { - "x": 118.000000, + "x": 177.000000, "y": -0.000000 }, "alias": "dR", @@ -7807,8 +7807,8 @@ "id": "177", "seqid": 60, "position": { - "x": 118.000000, - "y": -1.000000 + "x": 177.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7818,7 +7818,7 @@ "id": "178", "seqid": 59, "position": { - "x": 117.000000, + "x": 175.500000, "y": -0.000000 }, "alias": "P", @@ -7829,7 +7829,7 @@ "id": "179", "seqid": 61, "position": { - "x": 120.000000, + "x": 180.000000, "y": -0.000000 }, "alias": "dR", @@ -7840,8 +7840,8 @@ "id": "180", "seqid": 61, "position": { - "x": 120.000000, - "y": -1.000000 + "x": 180.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7851,7 +7851,7 @@ "id": "181", "seqid": 60, "position": { - "x": 119.000000, + "x": 178.500000, "y": -0.000000 }, "alias": "P", @@ -7862,7 +7862,7 @@ "id": "182", "seqid": 62, "position": { - "x": 122.000000, + "x": 183.000000, "y": -0.000000 }, "alias": "dR", @@ -7873,8 +7873,8 @@ "id": "183", "seqid": 62, "position": { - "x": 122.000000, - "y": -1.000000 + "x": 183.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7884,7 +7884,7 @@ "id": "184", "seqid": 61, "position": { - "x": 121.000000, + "x": 181.500000, "y": -0.000000 }, "alias": "P", @@ -7895,7 +7895,7 @@ "id": "185", "seqid": 63, "position": { - "x": 124.000000, + "x": 186.000000, "y": -0.000000 }, "alias": "dR", @@ -7906,8 +7906,8 @@ "id": "186", "seqid": 63, "position": { - "x": 124.000000, - "y": -1.000000 + "x": 186.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7917,7 +7917,7 @@ "id": "187", "seqid": 62, "position": { - "x": 123.000000, + "x": 184.500000, "y": -0.000000 }, "alias": "P", @@ -7928,7 +7928,7 @@ "id": "188", "seqid": 64, "position": { - "x": 126.000000, + "x": 189.000000, "y": -0.000000 }, "alias": "dR", @@ -7939,8 +7939,8 @@ "id": "189", "seqid": 64, "position": { - "x": 126.000000, - "y": -1.000000 + "x": 189.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7950,7 +7950,7 @@ "id": "190", "seqid": 63, "position": { - "x": 125.000000, + "x": 187.500000, "y": -0.000000 }, "alias": "P", @@ -7961,7 +7961,7 @@ "id": "191", "seqid": 65, "position": { - "x": 128.000000, + "x": 192.000000, "y": -0.000000 }, "alias": "dR", @@ -7972,8 +7972,8 @@ "id": "192", "seqid": 65, "position": { - "x": 128.000000, - "y": -1.000000 + "x": 192.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7983,7 +7983,7 @@ "id": "193", "seqid": 64, "position": { - "x": 127.000000, + "x": 190.500000, "y": -0.000000 }, "alias": "P", @@ -7994,7 +7994,7 @@ "id": "194", "seqid": 66, "position": { - "x": 130.000000, + "x": 195.000000, "y": -0.000000 }, "alias": "dR", @@ -8005,8 +8005,8 @@ "id": "195", "seqid": 66, "position": { - "x": 130.000000, - "y": -1.000000 + "x": 195.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8016,7 +8016,7 @@ "id": "196", "seqid": 65, "position": { - "x": 129.000000, + "x": 193.500000, "y": -0.000000 }, "alias": "P", @@ -8027,7 +8027,7 @@ "id": "197", "seqid": 67, "position": { - "x": 132.000000, + "x": 198.000000, "y": -0.000000 }, "alias": "dR", @@ -8038,8 +8038,8 @@ "id": "198", "seqid": 67, "position": { - "x": 132.000000, - "y": -1.000000 + "x": 198.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8049,7 +8049,7 @@ "id": "199", "seqid": 66, "position": { - "x": 131.000000, + "x": 196.500000, "y": -0.000000 }, "alias": "P", @@ -8060,7 +8060,7 @@ "id": "200", "seqid": 68, "position": { - "x": 134.000000, + "x": 201.000000, "y": -0.000000 }, "alias": "dR", @@ -8071,8 +8071,8 @@ "id": "201", "seqid": 68, "position": { - "x": 134.000000, - "y": -1.000000 + "x": 201.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8082,7 +8082,7 @@ "id": "202", "seqid": 67, "position": { - "x": 133.000000, + "x": 199.500000, "y": -0.000000 }, "alias": "P", @@ -8093,7 +8093,7 @@ "id": "203", "seqid": 69, "position": { - "x": 136.000000, + "x": 204.000000, "y": -0.000000 }, "alias": "dR", @@ -8104,8 +8104,8 @@ "id": "204", "seqid": 69, "position": { - "x": 136.000000, - "y": -1.000000 + "x": 204.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8115,7 +8115,7 @@ "id": "205", "seqid": 68, "position": { - "x": 135.000000, + "x": 202.500000, "y": -0.000000 }, "alias": "P", @@ -8126,7 +8126,7 @@ "id": "206", "seqid": 70, "position": { - "x": 138.000000, + "x": 207.000000, "y": -0.000000 }, "alias": "dR", @@ -8137,8 +8137,8 @@ "id": "207", "seqid": 70, "position": { - "x": 138.000000, - "y": -1.000000 + "x": 207.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8148,7 +8148,7 @@ "id": "208", "seqid": 69, "position": { - "x": 137.000000, + "x": 205.500000, "y": -0.000000 }, "alias": "P", @@ -8160,7 +8160,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -2.000000 + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8171,7 +8171,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -3.000000 + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8181,8 +8181,8 @@ "id": "211", "seqid": 2, "position": { - "x": 2.000000, - "y": -2.000000 + "x": 3.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8192,8 +8192,8 @@ "id": "212", "seqid": 2, "position": { - "x": 2.000000, - "y": -3.000000 + "x": 3.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8203,8 +8203,8 @@ "id": "213", "seqid": 1, "position": { - "x": 1.000000, - "y": -2.000000 + "x": 1.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8214,8 +8214,8 @@ "id": "214", "seqid": 3, "position": { - "x": 4.000000, - "y": -2.000000 + "x": 6.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8225,8 +8225,8 @@ "id": "215", "seqid": 3, "position": { - "x": 4.000000, - "y": -3.000000 + "x": 6.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8236,8 +8236,8 @@ "id": "216", "seqid": 2, "position": { - "x": 3.000000, - "y": -2.000000 + "x": 4.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8247,8 +8247,8 @@ "id": "217", "seqid": 4, "position": { - "x": 6.000000, - "y": -2.000000 + "x": 9.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8258,8 +8258,8 @@ "id": "218", "seqid": 4, "position": { - "x": 6.000000, - "y": -3.000000 + "x": 9.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8269,8 +8269,8 @@ "id": "219", "seqid": 3, "position": { - "x": 5.000000, - "y": -2.000000 + "x": 7.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8280,8 +8280,8 @@ "id": "220", "seqid": 5, "position": { - "x": 8.000000, - "y": -2.000000 + "x": 12.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8291,8 +8291,8 @@ "id": "221", "seqid": 5, "position": { - "x": 8.000000, - "y": -3.000000 + "x": 12.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8302,8 +8302,8 @@ "id": "222", "seqid": 4, "position": { - "x": 7.000000, - "y": -2.000000 + "x": 10.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8313,8 +8313,8 @@ "id": "223", "seqid": 6, "position": { - "x": 10.000000, - "y": -2.000000 + "x": 15.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8324,8 +8324,8 @@ "id": "224", "seqid": 6, "position": { - "x": 10.000000, - "y": -3.000000 + "x": 15.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8335,8 +8335,8 @@ "id": "225", "seqid": 5, "position": { - "x": 9.000000, - "y": -2.000000 + "x": 13.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8346,8 +8346,8 @@ "id": "226", "seqid": 7, "position": { - "x": 12.000000, - "y": -2.000000 + "x": 18.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8357,8 +8357,8 @@ "id": "227", "seqid": 7, "position": { - "x": 12.000000, - "y": -3.000000 + "x": 18.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8368,8 +8368,8 @@ "id": "228", "seqid": 6, "position": { - "x": 11.000000, - "y": -2.000000 + "x": 16.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8379,8 +8379,8 @@ "id": "229", "seqid": 8, "position": { - "x": 14.000000, - "y": -2.000000 + "x": 21.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8390,8 +8390,8 @@ "id": "230", "seqid": 8, "position": { - "x": 14.000000, - "y": -3.000000 + "x": 21.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8401,8 +8401,8 @@ "id": "231", "seqid": 7, "position": { - "x": 13.000000, - "y": -2.000000 + "x": 19.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8412,8 +8412,8 @@ "id": "232", "seqid": 9, "position": { - "x": 16.000000, - "y": -2.000000 + "x": 24.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8423,8 +8423,8 @@ "id": "233", "seqid": 9, "position": { - "x": 16.000000, - "y": -3.000000 + "x": 24.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8434,8 +8434,8 @@ "id": "234", "seqid": 8, "position": { - "x": 15.000000, - "y": -2.000000 + "x": 22.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8445,8 +8445,8 @@ "id": "235", "seqid": 10, "position": { - "x": 18.000000, - "y": -2.000000 + "x": 27.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8456,8 +8456,8 @@ "id": "236", "seqid": 10, "position": { - "x": 18.000000, - "y": -3.000000 + "x": 27.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8467,8 +8467,8 @@ "id": "237", "seqid": 9, "position": { - "x": 17.000000, - "y": -2.000000 + "x": 25.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8478,8 +8478,8 @@ "id": "238", "seqid": 11, "position": { - "x": 20.000000, - "y": -2.000000 + "x": 30.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8489,8 +8489,8 @@ "id": "239", "seqid": 11, "position": { - "x": 20.000000, - "y": -3.000000 + "x": 30.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8500,8 +8500,8 @@ "id": "240", "seqid": 10, "position": { - "x": 19.000000, - "y": -2.000000 + "x": 28.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8511,8 +8511,8 @@ "id": "241", "seqid": 12, "position": { - "x": 22.000000, - "y": -2.000000 + "x": 33.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8522,8 +8522,8 @@ "id": "242", "seqid": 12, "position": { - "x": 22.000000, - "y": -3.000000 + "x": 33.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8533,8 +8533,8 @@ "id": "243", "seqid": 11, "position": { - "x": 21.000000, - "y": -2.000000 + "x": 31.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8544,8 +8544,8 @@ "id": "244", "seqid": 13, "position": { - "x": 24.000000, - "y": -2.000000 + "x": 36.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8555,8 +8555,8 @@ "id": "245", "seqid": 13, "position": { - "x": 24.000000, - "y": -3.000000 + "x": 36.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8566,8 +8566,8 @@ "id": "246", "seqid": 12, "position": { - "x": 23.000000, - "y": -2.000000 + "x": 34.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8577,8 +8577,8 @@ "id": "247", "seqid": 14, "position": { - "x": 26.000000, - "y": -2.000000 + "x": 39.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8588,8 +8588,8 @@ "id": "248", "seqid": 14, "position": { - "x": 26.000000, - "y": -3.000000 + "x": 39.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8599,8 +8599,8 @@ "id": "249", "seqid": 13, "position": { - "x": 25.000000, - "y": -2.000000 + "x": 37.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8610,8 +8610,8 @@ "id": "250", "seqid": 15, "position": { - "x": 28.000000, - "y": -2.000000 + "x": 42.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8621,8 +8621,8 @@ "id": "251", "seqid": 15, "position": { - "x": 28.000000, - "y": -3.000000 + "x": 42.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8632,8 +8632,8 @@ "id": "252", "seqid": 14, "position": { - "x": 27.000000, - "y": -2.000000 + "x": 40.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8643,8 +8643,8 @@ "id": "253", "seqid": 16, "position": { - "x": 30.000000, - "y": -2.000000 + "x": 45.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8654,8 +8654,8 @@ "id": "254", "seqid": 16, "position": { - "x": 30.000000, - "y": -3.000000 + "x": 45.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8665,8 +8665,8 @@ "id": "255", "seqid": 15, "position": { - "x": 29.000000, - "y": -2.000000 + "x": 43.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8676,8 +8676,8 @@ "id": "256", "seqid": 17, "position": { - "x": 32.000000, - "y": -2.000000 + "x": 48.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8687,8 +8687,8 @@ "id": "257", "seqid": 17, "position": { - "x": 32.000000, - "y": -3.000000 + "x": 48.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8698,8 +8698,8 @@ "id": "258", "seqid": 16, "position": { - "x": 31.000000, - "y": -2.000000 + "x": 46.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8709,8 +8709,8 @@ "id": "259", "seqid": 18, "position": { - "x": 34.000000, - "y": -2.000000 + "x": 51.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8720,8 +8720,8 @@ "id": "260", "seqid": 18, "position": { - "x": 34.000000, - "y": -3.000000 + "x": 51.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8731,8 +8731,8 @@ "id": "261", "seqid": 17, "position": { - "x": 33.000000, - "y": -2.000000 + "x": 49.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8742,8 +8742,8 @@ "id": "262", "seqid": 19, "position": { - "x": 36.000000, - "y": -2.000000 + "x": 54.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8753,8 +8753,8 @@ "id": "263", "seqid": 19, "position": { - "x": 36.000000, - "y": -3.000000 + "x": 54.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8764,8 +8764,8 @@ "id": "264", "seqid": 18, "position": { - "x": 35.000000, - "y": -2.000000 + "x": 52.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8775,8 +8775,8 @@ "id": "265", "seqid": 20, "position": { - "x": 38.000000, - "y": -2.000000 + "x": 57.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8786,8 +8786,8 @@ "id": "266", "seqid": 20, "position": { - "x": 38.000000, - "y": -3.000000 + "x": 57.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8797,8 +8797,8 @@ "id": "267", "seqid": 19, "position": { - "x": 37.000000, - "y": -2.000000 + "x": 55.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8808,8 +8808,8 @@ "id": "268", "seqid": 21, "position": { - "x": 40.000000, - "y": -2.000000 + "x": 60.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8819,8 +8819,8 @@ "id": "269", "seqid": 21, "position": { - "x": 40.000000, - "y": -3.000000 + "x": 60.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8830,8 +8830,8 @@ "id": "270", "seqid": 20, "position": { - "x": 39.000000, - "y": -2.000000 + "x": 58.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8841,8 +8841,8 @@ "id": "271", "seqid": 22, "position": { - "x": 42.000000, - "y": -2.000000 + "x": 63.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8852,8 +8852,8 @@ "id": "272", "seqid": 22, "position": { - "x": 42.000000, - "y": -3.000000 + "x": 63.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8863,8 +8863,8 @@ "id": "273", "seqid": 21, "position": { - "x": 41.000000, - "y": -2.000000 + "x": 61.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8874,8 +8874,8 @@ "id": "274", "seqid": 23, "position": { - "x": 44.000000, - "y": -2.000000 + "x": 66.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8885,8 +8885,8 @@ "id": "275", "seqid": 23, "position": { - "x": 44.000000, - "y": -3.000000 + "x": 66.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8896,8 +8896,8 @@ "id": "276", "seqid": 22, "position": { - "x": 43.000000, - "y": -2.000000 + "x": 64.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8907,8 +8907,8 @@ "id": "277", "seqid": 24, "position": { - "x": 46.000000, - "y": -2.000000 + "x": 69.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8918,8 +8918,8 @@ "id": "278", "seqid": 24, "position": { - "x": 46.000000, - "y": -3.000000 + "x": 69.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8929,8 +8929,8 @@ "id": "279", "seqid": 23, "position": { - "x": 45.000000, - "y": -2.000000 + "x": 67.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8940,8 +8940,8 @@ "id": "280", "seqid": 25, "position": { - "x": 48.000000, - "y": -2.000000 + "x": 72.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8951,8 +8951,8 @@ "id": "281", "seqid": 25, "position": { - "x": 48.000000, - "y": -3.000000 + "x": 72.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8962,8 +8962,8 @@ "id": "282", "seqid": 24, "position": { - "x": 47.000000, - "y": -2.000000 + "x": 70.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -8973,8 +8973,8 @@ "id": "283", "seqid": 26, "position": { - "x": 50.000000, - "y": -2.000000 + "x": 75.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -8984,8 +8984,8 @@ "id": "284", "seqid": 26, "position": { - "x": 50.000000, - "y": -3.000000 + "x": 75.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8995,8 +8995,8 @@ "id": "285", "seqid": 25, "position": { - "x": 49.000000, - "y": -2.000000 + "x": 73.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9006,8 +9006,8 @@ "id": "286", "seqid": 27, "position": { - "x": 52.000000, - "y": -2.000000 + "x": 78.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9017,8 +9017,8 @@ "id": "287", "seqid": 27, "position": { - "x": 52.000000, - "y": -3.000000 + "x": 78.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9028,8 +9028,8 @@ "id": "288", "seqid": 26, "position": { - "x": 51.000000, - "y": -2.000000 + "x": 76.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9039,8 +9039,8 @@ "id": "289", "seqid": 28, "position": { - "x": 54.000000, - "y": -2.000000 + "x": 81.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9050,8 +9050,8 @@ "id": "290", "seqid": 28, "position": { - "x": 54.000000, - "y": -3.000000 + "x": 81.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9061,8 +9061,8 @@ "id": "291", "seqid": 27, "position": { - "x": 53.000000, - "y": -2.000000 + "x": 79.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9072,8 +9072,8 @@ "id": "292", "seqid": 29, "position": { - "x": 56.000000, - "y": -2.000000 + "x": 84.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9083,8 +9083,8 @@ "id": "293", "seqid": 29, "position": { - "x": 56.000000, - "y": -3.000000 + "x": 84.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9094,8 +9094,8 @@ "id": "294", "seqid": 28, "position": { - "x": 55.000000, - "y": -2.000000 + "x": 82.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9105,8 +9105,8 @@ "id": "295", "seqid": 30, "position": { - "x": 58.000000, - "y": -2.000000 + "x": 87.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9116,8 +9116,8 @@ "id": "296", "seqid": 30, "position": { - "x": 58.000000, - "y": -3.000000 + "x": 87.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9127,8 +9127,8 @@ "id": "297", "seqid": 29, "position": { - "x": 57.000000, - "y": -2.000000 + "x": 85.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9138,8 +9138,8 @@ "id": "298", "seqid": 31, "position": { - "x": 60.000000, - "y": -2.000000 + "x": 90.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9149,8 +9149,8 @@ "id": "299", "seqid": 31, "position": { - "x": 60.000000, - "y": -3.000000 + "x": 90.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9160,8 +9160,8 @@ "id": "300", "seqid": 30, "position": { - "x": 59.000000, - "y": -2.000000 + "x": 88.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9171,8 +9171,8 @@ "id": "301", "seqid": 32, "position": { - "x": 62.000000, - "y": -2.000000 + "x": 93.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9182,8 +9182,8 @@ "id": "302", "seqid": 32, "position": { - "x": 62.000000, - "y": -3.000000 + "x": 93.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9193,8 +9193,8 @@ "id": "303", "seqid": 31, "position": { - "x": 61.000000, - "y": -2.000000 + "x": 91.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9204,8 +9204,8 @@ "id": "304", "seqid": 33, "position": { - "x": 64.000000, - "y": -2.000000 + "x": 96.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9215,8 +9215,8 @@ "id": "305", "seqid": 33, "position": { - "x": 64.000000, - "y": -3.000000 + "x": 96.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9226,8 +9226,8 @@ "id": "306", "seqid": 32, "position": { - "x": 63.000000, - "y": -2.000000 + "x": 94.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9237,8 +9237,8 @@ "id": "307", "seqid": 34, "position": { - "x": 66.000000, - "y": -2.000000 + "x": 99.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9248,8 +9248,8 @@ "id": "308", "seqid": 34, "position": { - "x": 66.000000, - "y": -3.000000 + "x": 99.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9259,8 +9259,8 @@ "id": "309", "seqid": 33, "position": { - "x": 65.000000, - "y": -2.000000 + "x": 97.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9270,8 +9270,8 @@ "id": "310", "seqid": 35, "position": { - "x": 68.000000, - "y": -2.000000 + "x": 102.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9281,8 +9281,8 @@ "id": "311", "seqid": 35, "position": { - "x": 68.000000, - "y": -3.000000 + "x": 102.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9292,8 +9292,8 @@ "id": "312", "seqid": 34, "position": { - "x": 67.000000, - "y": -2.000000 + "x": 100.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9303,8 +9303,8 @@ "id": "313", "seqid": 36, "position": { - "x": 70.000000, - "y": -2.000000 + "x": 105.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9314,8 +9314,8 @@ "id": "314", "seqid": 36, "position": { - "x": 70.000000, - "y": -3.000000 + "x": 105.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9325,8 +9325,8 @@ "id": "315", "seqid": 35, "position": { - "x": 69.000000, - "y": -2.000000 + "x": 103.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9336,8 +9336,8 @@ "id": "316", "seqid": 37, "position": { - "x": 72.000000, - "y": -2.000000 + "x": 108.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9347,8 +9347,8 @@ "id": "317", "seqid": 37, "position": { - "x": 72.000000, - "y": -3.000000 + "x": 108.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9358,8 +9358,8 @@ "id": "318", "seqid": 36, "position": { - "x": 71.000000, - "y": -2.000000 + "x": 106.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9369,8 +9369,8 @@ "id": "319", "seqid": 38, "position": { - "x": 74.000000, - "y": -2.000000 + "x": 111.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9380,8 +9380,8 @@ "id": "320", "seqid": 38, "position": { - "x": 74.000000, - "y": -3.000000 + "x": 111.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9391,8 +9391,8 @@ "id": "321", "seqid": 37, "position": { - "x": 73.000000, - "y": -2.000000 + "x": 109.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9402,8 +9402,8 @@ "id": "322", "seqid": 39, "position": { - "x": 76.000000, - "y": -2.000000 + "x": 114.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9413,8 +9413,8 @@ "id": "323", "seqid": 39, "position": { - "x": 76.000000, - "y": -3.000000 + "x": 114.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9424,8 +9424,8 @@ "id": "324", "seqid": 38, "position": { - "x": 75.000000, - "y": -2.000000 + "x": 112.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9435,8 +9435,8 @@ "id": "325", "seqid": 40, "position": { - "x": 78.000000, - "y": -2.000000 + "x": 117.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9446,8 +9446,8 @@ "id": "326", "seqid": 40, "position": { - "x": 78.000000, - "y": -3.000000 + "x": 117.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9457,8 +9457,8 @@ "id": "327", "seqid": 39, "position": { - "x": 77.000000, - "y": -2.000000 + "x": 115.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9468,8 +9468,8 @@ "id": "328", "seqid": 41, "position": { - "x": 80.000000, - "y": -2.000000 + "x": 120.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9479,8 +9479,8 @@ "id": "329", "seqid": 41, "position": { - "x": 80.000000, - "y": -3.000000 + "x": 120.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9490,8 +9490,8 @@ "id": "330", "seqid": 40, "position": { - "x": 79.000000, - "y": -2.000000 + "x": 118.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9501,8 +9501,8 @@ "id": "331", "seqid": 42, "position": { - "x": 82.000000, - "y": -2.000000 + "x": 123.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9512,8 +9512,8 @@ "id": "332", "seqid": 42, "position": { - "x": 82.000000, - "y": -3.000000 + "x": 123.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9523,8 +9523,8 @@ "id": "333", "seqid": 41, "position": { - "x": 81.000000, - "y": -2.000000 + "x": 121.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9534,8 +9534,8 @@ "id": "334", "seqid": 43, "position": { - "x": 84.000000, - "y": -2.000000 + "x": 126.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9545,8 +9545,8 @@ "id": "335", "seqid": 43, "position": { - "x": 84.000000, - "y": -3.000000 + "x": 126.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9556,8 +9556,8 @@ "id": "336", "seqid": 42, "position": { - "x": 83.000000, - "y": -2.000000 + "x": 124.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9567,8 +9567,8 @@ "id": "337", "seqid": 44, "position": { - "x": 86.000000, - "y": -2.000000 + "x": 129.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9578,8 +9578,8 @@ "id": "338", "seqid": 44, "position": { - "x": 86.000000, - "y": -3.000000 + "x": 129.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9589,8 +9589,8 @@ "id": "339", "seqid": 43, "position": { - "x": 85.000000, - "y": -2.000000 + "x": 127.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9600,8 +9600,8 @@ "id": "340", "seqid": 45, "position": { - "x": 88.000000, - "y": -2.000000 + "x": 132.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9611,8 +9611,8 @@ "id": "341", "seqid": 45, "position": { - "x": 88.000000, - "y": -3.000000 + "x": 132.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9622,8 +9622,8 @@ "id": "342", "seqid": 44, "position": { - "x": 87.000000, - "y": -2.000000 + "x": 130.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9633,8 +9633,8 @@ "id": "343", "seqid": 46, "position": { - "x": 90.000000, - "y": -2.000000 + "x": 135.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9644,8 +9644,8 @@ "id": "344", "seqid": 46, "position": { - "x": 90.000000, - "y": -3.000000 + "x": 135.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9655,8 +9655,8 @@ "id": "345", "seqid": 45, "position": { - "x": 89.000000, - "y": -2.000000 + "x": 133.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9666,8 +9666,8 @@ "id": "346", "seqid": 47, "position": { - "x": 92.000000, - "y": -2.000000 + "x": 138.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9677,8 +9677,8 @@ "id": "347", "seqid": 47, "position": { - "x": 92.000000, - "y": -3.000000 + "x": 138.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9688,8 +9688,8 @@ "id": "348", "seqid": 46, "position": { - "x": 91.000000, - "y": -2.000000 + "x": 136.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9699,8 +9699,8 @@ "id": "349", "seqid": 48, "position": { - "x": 94.000000, - "y": -2.000000 + "x": 141.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9710,8 +9710,8 @@ "id": "350", "seqid": 48, "position": { - "x": 94.000000, - "y": -3.000000 + "x": 141.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9721,8 +9721,8 @@ "id": "351", "seqid": 47, "position": { - "x": 93.000000, - "y": -2.000000 + "x": 139.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9732,8 +9732,8 @@ "id": "352", "seqid": 49, "position": { - "x": 96.000000, - "y": -2.000000 + "x": 144.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9743,8 +9743,8 @@ "id": "353", "seqid": 49, "position": { - "x": 96.000000, - "y": -3.000000 + "x": 144.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9754,8 +9754,8 @@ "id": "354", "seqid": 48, "position": { - "x": 95.000000, - "y": -2.000000 + "x": 142.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9765,8 +9765,8 @@ "id": "355", "seqid": 50, "position": { - "x": 98.000000, - "y": -2.000000 + "x": 147.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9776,8 +9776,8 @@ "id": "356", "seqid": 50, "position": { - "x": 98.000000, - "y": -3.000000 + "x": 147.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9787,8 +9787,8 @@ "id": "357", "seqid": 49, "position": { - "x": 97.000000, - "y": -2.000000 + "x": 145.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9798,8 +9798,8 @@ "id": "358", "seqid": 51, "position": { - "x": 100.000000, - "y": -2.000000 + "x": 150.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9809,8 +9809,8 @@ "id": "359", "seqid": 51, "position": { - "x": 100.000000, - "y": -3.000000 + "x": 150.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9820,8 +9820,8 @@ "id": "360", "seqid": 50, "position": { - "x": 99.000000, - "y": -2.000000 + "x": 148.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9831,8 +9831,8 @@ "id": "361", "seqid": 52, "position": { - "x": 102.000000, - "y": -2.000000 + "x": 153.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9842,8 +9842,8 @@ "id": "362", "seqid": 52, "position": { - "x": 102.000000, - "y": -3.000000 + "x": 153.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9853,8 +9853,8 @@ "id": "363", "seqid": 51, "position": { - "x": 101.000000, - "y": -2.000000 + "x": 151.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9864,8 +9864,8 @@ "id": "364", "seqid": 53, "position": { - "x": 104.000000, - "y": -2.000000 + "x": 156.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9875,8 +9875,8 @@ "id": "365", "seqid": 53, "position": { - "x": 104.000000, - "y": -3.000000 + "x": 156.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9886,8 +9886,8 @@ "id": "366", "seqid": 52, "position": { - "x": 103.000000, - "y": -2.000000 + "x": 154.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9897,8 +9897,8 @@ "id": "367", "seqid": 54, "position": { - "x": 106.000000, - "y": -2.000000 + "x": 159.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9908,8 +9908,8 @@ "id": "368", "seqid": 54, "position": { - "x": 106.000000, - "y": -3.000000 + "x": 159.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9919,8 +9919,8 @@ "id": "369", "seqid": 53, "position": { - "x": 105.000000, - "y": -2.000000 + "x": 157.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9930,8 +9930,8 @@ "id": "370", "seqid": 55, "position": { - "x": 108.000000, - "y": -2.000000 + "x": 162.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9941,8 +9941,8 @@ "id": "371", "seqid": 55, "position": { - "x": 108.000000, - "y": -3.000000 + "x": 162.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9952,8 +9952,8 @@ "id": "372", "seqid": 54, "position": { - "x": 107.000000, - "y": -2.000000 + "x": 160.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9963,8 +9963,8 @@ "id": "373", "seqid": 56, "position": { - "x": 110.000000, - "y": -2.000000 + "x": 165.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -9974,8 +9974,8 @@ "id": "374", "seqid": 56, "position": { - "x": 110.000000, - "y": -3.000000 + "x": 165.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9985,8 +9985,8 @@ "id": "375", "seqid": 55, "position": { - "x": 109.000000, - "y": -2.000000 + "x": 163.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -9996,8 +9996,8 @@ "id": "376", "seqid": 57, "position": { - "x": 112.000000, - "y": -2.000000 + "x": 168.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10007,8 +10007,8 @@ "id": "377", "seqid": 57, "position": { - "x": 112.000000, - "y": -3.000000 + "x": 168.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -10018,8 +10018,8 @@ "id": "378", "seqid": 56, "position": { - "x": 111.000000, - "y": -2.000000 + "x": 166.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10029,8 +10029,8 @@ "id": "379", "seqid": 58, "position": { - "x": 114.000000, - "y": -2.000000 + "x": 171.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10040,8 +10040,8 @@ "id": "380", "seqid": 58, "position": { - "x": 114.000000, - "y": -3.000000 + "x": 171.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -10051,8 +10051,8 @@ "id": "381", "seqid": 57, "position": { - "x": 113.000000, - "y": -2.000000 + "x": 169.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10062,8 +10062,8 @@ "id": "382", "seqid": 59, "position": { - "x": 116.000000, - "y": -2.000000 + "x": 174.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10073,8 +10073,8 @@ "id": "383", "seqid": 59, "position": { - "x": 116.000000, - "y": -3.000000 + "x": 174.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -10084,8 +10084,8 @@ "id": "384", "seqid": 58, "position": { - "x": 115.000000, - "y": -2.000000 + "x": 172.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10095,8 +10095,8 @@ "id": "385", "seqid": 60, "position": { - "x": 118.000000, - "y": -2.000000 + "x": 177.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10106,8 +10106,8 @@ "id": "386", "seqid": 60, "position": { - "x": 118.000000, - "y": -3.000000 + "x": 177.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -10117,8 +10117,8 @@ "id": "387", "seqid": 59, "position": { - "x": 117.000000, - "y": -2.000000 + "x": 175.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10128,8 +10128,8 @@ "id": "388", "seqid": 61, "position": { - "x": 120.000000, - "y": -2.000000 + "x": 180.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10139,8 +10139,8 @@ "id": "389", "seqid": 61, "position": { - "x": 120.000000, - "y": -3.000000 + "x": 180.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -10150,8 +10150,8 @@ "id": "390", "seqid": 60, "position": { - "x": 119.000000, - "y": -2.000000 + "x": 178.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10161,8 +10161,8 @@ "id": "391", "seqid": 62, "position": { - "x": 122.000000, - "y": -2.000000 + "x": 183.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10172,8 +10172,8 @@ "id": "392", "seqid": 62, "position": { - "x": 122.000000, - "y": -3.000000 + "x": 183.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -10183,8 +10183,8 @@ "id": "393", "seqid": 61, "position": { - "x": 121.000000, - "y": -2.000000 + "x": 181.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10194,8 +10194,8 @@ "id": "394", "seqid": 63, "position": { - "x": 124.000000, - "y": -2.000000 + "x": 186.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10205,8 +10205,8 @@ "id": "395", "seqid": 63, "position": { - "x": 124.000000, - "y": -3.000000 + "x": 186.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -10216,8 +10216,8 @@ "id": "396", "seqid": 62, "position": { - "x": 123.000000, - "y": -2.000000 + "x": 184.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10227,8 +10227,8 @@ "id": "397", "seqid": 64, "position": { - "x": 126.000000, - "y": -2.000000 + "x": 189.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10238,8 +10238,8 @@ "id": "398", "seqid": 64, "position": { - "x": 126.000000, - "y": -3.000000 + "x": 189.000000, + "y": -4.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -10249,8 +10249,8 @@ "id": "399", "seqid": 63, "position": { - "x": 125.000000, - "y": -2.000000 + "x": 187.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10260,8 +10260,8 @@ "id": "400", "seqid": 65, "position": { - "x": 128.000000, - "y": -2.000000 + "x": 192.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10271,8 +10271,8 @@ "id": "401", "seqid": 65, "position": { - "x": 128.000000, - "y": -3.000000 + "x": 192.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -10282,8 +10282,8 @@ "id": "402", "seqid": 64, "position": { - "x": 127.000000, - "y": -2.000000 + "x": 190.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10293,8 +10293,8 @@ "id": "403", "seqid": 66, "position": { - "x": 130.000000, - "y": -2.000000 + "x": 195.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10304,8 +10304,8 @@ "id": "404", "seqid": 66, "position": { - "x": 130.000000, - "y": -3.000000 + "x": 195.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -10315,8 +10315,8 @@ "id": "405", "seqid": 65, "position": { - "x": 129.000000, - "y": -2.000000 + "x": 193.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10326,8 +10326,8 @@ "id": "406", "seqid": 67, "position": { - "x": 132.000000, - "y": -2.000000 + "x": 198.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10337,8 +10337,8 @@ "id": "407", "seqid": 67, "position": { - "x": 132.000000, - "y": -3.000000 + "x": 198.000000, + "y": -4.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -10348,8 +10348,8 @@ "id": "408", "seqid": 66, "position": { - "x": 131.000000, - "y": -2.000000 + "x": 196.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10359,8 +10359,8 @@ "id": "409", "seqid": 68, "position": { - "x": 134.000000, - "y": -2.000000 + "x": 201.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10370,8 +10370,8 @@ "id": "410", "seqid": 68, "position": { - "x": 134.000000, - "y": -3.000000 + "x": 201.000000, + "y": -4.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -10381,8 +10381,8 @@ "id": "411", "seqid": 67, "position": { - "x": 133.000000, - "y": -2.000000 + "x": 199.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10392,8 +10392,8 @@ "id": "412", "seqid": 69, "position": { - "x": 136.000000, - "y": -2.000000 + "x": 204.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10403,8 +10403,8 @@ "id": "413", "seqid": 69, "position": { - "x": 136.000000, - "y": -3.000000 + "x": 204.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -10414,8 +10414,8 @@ "id": "414", "seqid": 68, "position": { - "x": 135.000000, - "y": -2.000000 + "x": 202.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" @@ -10425,8 +10425,8 @@ "id": "415", "seqid": 70, "position": { - "x": 138.000000, - "y": -2.000000 + "x": 207.000000, + "y": -3.000000 }, "alias": "dR", "templateId": "dR___Deoxy-Ribose" @@ -10436,8 +10436,8 @@ "id": "416", "seqid": 70, "position": { - "x": 138.000000, - "y": -3.000000 + "x": 207.000000, + "y": -4.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -10447,8 +10447,8 @@ "id": "417", "seqid": 69, "position": { - "x": 137.000000, - "y": -2.000000 + "x": 205.500000, + "y": -3.000000 }, "alias": "P", "templateId": "P___Phosphate" diff --git a/api/tests/integration/tests/formats/ref/peptides_3letter.ket b/api/tests/integration/tests/formats/ref/peptides_3letter.ket index 8b036afd8a..45063d15da 100644 --- a/api/tests/integration/tests/formats/ref/peptides_3letter.ket +++ b/api/tests/integration/tests/formats/ref/peptides_3letter.ket @@ -454,7 +454,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "R", @@ -465,7 +465,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "N", @@ -476,7 +476,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "D", @@ -487,7 +487,7 @@ "id": "4", "seqid": 5, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "C", @@ -498,7 +498,7 @@ "id": "5", "seqid": 6, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "Q", @@ -509,7 +509,7 @@ "id": "6", "seqid": 7, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "E", @@ -520,7 +520,7 @@ "id": "7", "seqid": 8, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "G", @@ -531,7 +531,7 @@ "id": "8", "seqid": 9, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "H", @@ -542,7 +542,7 @@ "id": "9", "seqid": 10, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "I", @@ -553,7 +553,7 @@ "id": "10", "seqid": 11, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "L", @@ -564,7 +564,7 @@ "id": "11", "seqid": 12, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "K", @@ -575,7 +575,7 @@ "id": "12", "seqid": 13, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "M", @@ -586,7 +586,7 @@ "id": "13", "seqid": 14, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "F", @@ -597,7 +597,7 @@ "id": "14", "seqid": 15, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "P", @@ -608,7 +608,7 @@ "id": "15", "seqid": 16, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "S", @@ -619,7 +619,7 @@ "id": "16", "seqid": 17, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "T", @@ -630,7 +630,7 @@ "id": "17", "seqid": 18, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "W", @@ -641,7 +641,7 @@ "id": "18", "seqid": 19, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "Y", @@ -652,7 +652,7 @@ "id": "19", "seqid": 20, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "V", @@ -663,7 +663,7 @@ "id": "20", "seqid": 21, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "U", @@ -674,7 +674,7 @@ "id": "21", "seqid": 22, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "O", @@ -684,7 +684,7 @@ "type": "ambiguousMonomer", "id": "22", "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "seqid": 23, @@ -695,7 +695,7 @@ "type": "ambiguousMonomer", "id": "23", "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "seqid": 24, @@ -706,7 +706,7 @@ "type": "ambiguousMonomer", "id": "24", "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "seqid": 25, @@ -717,7 +717,7 @@ "type": "ambiguousMonomer", "id": "25", "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "seqid": 26, diff --git a/api/tests/integration/tests/formats/ref/peptides_3letter_line_break.ket b/api/tests/integration/tests/formats/ref/peptides_3letter_line_break.ket index eaee756cc3..b99f70bede 100644 --- a/api/tests/integration/tests/formats/ref/peptides_3letter_line_break.ket +++ b/api/tests/integration/tests/formats/ref/peptides_3letter_line_break.ket @@ -80,7 +80,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "R", @@ -91,7 +91,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "N", @@ -102,7 +102,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "D", diff --git a/api/tests/integration/tests/formats/ref/rna_acgtu.ket b/api/tests/integration/tests/formats/ref/rna_acgtu.ket index 53f7ab829b..79ee98b47f 100644 --- a/api/tests/integration/tests/formats/ref/rna_acgtu.ket +++ b/api/tests/integration/tests/formats/ref/rna_acgtu.ket @@ -230,7 +230,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -240,7 +240,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "R", @@ -251,8 +251,8 @@ "id": "3", "seqid": 2, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -262,7 +262,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -273,7 +273,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "R", @@ -284,8 +284,8 @@ "id": "6", "seqid": 3, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -295,7 +295,7 @@ "id": "7", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -306,7 +306,7 @@ "id": "8", "seqid": 4, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "R", @@ -317,8 +317,8 @@ "id": "9", "seqid": 4, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -328,7 +328,7 @@ "id": "10", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -339,7 +339,7 @@ "id": "11", "seqid": 5, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "R", @@ -350,8 +350,8 @@ "id": "12", "seqid": 5, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -361,7 +361,7 @@ "id": "13", "seqid": 4, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/rna_variants.ket b/api/tests/integration/tests/formats/ref/rna_variants.ket index b0a3ecdcd2..74b5778cc7 100644 --- a/api/tests/integration/tests/formats/ref/rna_variants.ket +++ b/api/tests/integration/tests/formats/ref/rna_variants.ket @@ -151,7 +151,7 @@ "id": "1", "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "seqid": 1, "alias": "R", @@ -162,7 +162,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "R", @@ -172,8 +172,8 @@ "type": "ambiguousMonomer", "id": "3", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 2, "alias": "K", @@ -184,7 +184,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -195,7 +195,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "R", @@ -205,8 +205,8 @@ "type": "ambiguousMonomer", "id": "6", "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "seqid": 3, "alias": "N", @@ -217,7 +217,7 @@ "id": "7", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/spaces.ket b/api/tests/integration/tests/formats/ref/spaces.ket index 590c995fb1..a378b1818a 100644 --- a/api/tests/integration/tests/formats/ref/spaces.ket +++ b/api/tests/integration/tests/formats/ref/spaces.ket @@ -372,7 +372,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "C", @@ -383,7 +383,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "D", @@ -394,7 +394,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "E", @@ -405,7 +405,7 @@ "id": "4", "seqid": 5, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "F", @@ -416,7 +416,7 @@ "id": "5", "seqid": 6, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "G", @@ -427,7 +427,7 @@ "id": "6", "seqid": 7, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "H", @@ -438,7 +438,7 @@ "id": "7", "seqid": 8, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "I", @@ -449,7 +449,7 @@ "id": "8", "seqid": 9, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "K", @@ -460,7 +460,7 @@ "id": "9", "seqid": 10, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "L", @@ -471,7 +471,7 @@ "id": "10", "seqid": 11, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "M", @@ -482,7 +482,7 @@ "id": "11", "seqid": 12, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "N", @@ -494,7 +494,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "O", "templateId": "O___Pyrrolysine" @@ -504,8 +504,8 @@ "id": "13", "seqid": 2, "position": { - "x": 1.000000, - "y": -1.000000 + "x": 1.500000, + "y": -1.500000 }, "alias": "P", "templateId": "P___Proline" @@ -515,8 +515,8 @@ "id": "14", "seqid": 3, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "Q", "templateId": "Q___Glutamine" @@ -526,8 +526,8 @@ "id": "15", "seqid": 4, "position": { - "x": 3.000000, - "y": -1.000000 + "x": 4.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -537,8 +537,8 @@ "id": "16", "seqid": 5, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "S", "templateId": "S___Serine" @@ -548,8 +548,8 @@ "id": "17", "seqid": 6, "position": { - "x": 5.000000, - "y": -1.000000 + "x": 7.500000, + "y": -1.500000 }, "alias": "R", "templateId": "R___Arginine" @@ -559,8 +559,8 @@ "id": "18", "seqid": 7, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Selenocysteine" @@ -570,8 +570,8 @@ "id": "19", "seqid": 8, "position": { - "x": 7.000000, - "y": -1.000000 + "x": 10.500000, + "y": -1.500000 }, "alias": "V", "templateId": "V___Valine" @@ -581,8 +581,8 @@ "id": "20", "seqid": 9, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "W", "templateId": "W___Tryptophan" @@ -592,8 +592,8 @@ "id": "21", "seqid": 10, "position": { - "x": 9.000000, - "y": -1.000000 + "x": 13.500000, + "y": -1.500000 }, "alias": "Y", "templateId": "Y___Tyrosine" diff --git a/api/tests/integration/tests/formats/ref/test_1881.ket b/api/tests/integration/tests/formats/ref/test_1881.ket index e32d39a187..1bc072bf32 100644 --- a/api/tests/integration/tests/formats/ref/test_1881.ket +++ b/api/tests/integration/tests/formats/ref/test_1881.ket @@ -43,7 +43,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Alanine" @@ -54,7 +54,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -2.000000 + "y": -3.000000 }, "alias": "D", "templateId": "D___Aspartic acid" @@ -65,7 +65,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -3.000000 + "y": -4.500000 }, "alias": "C", "templateId": "C___Cysteine" diff --git a/api/tests/integration/tests/formats/ref/test_dna.ket b/api/tests/integration/tests/formats/ref/test_dna.ket index 69317001c8..3fbd919379 100644 --- a/api/tests/integration/tests/formats/ref/test_dna.ket +++ b/api/tests/integration/tests/formats/ref/test_dna.ket @@ -5351,7 +5351,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5361,7 +5361,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -5372,8 +5372,8 @@ "id": "3", "seqid": 2, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5383,7 +5383,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -5394,7 +5394,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -5405,8 +5405,8 @@ "id": "6", "seqid": 3, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5416,7 +5416,7 @@ "id": "7", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -5427,7 +5427,7 @@ "id": "8", "seqid": 4, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -5438,8 +5438,8 @@ "id": "9", "seqid": 4, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5449,7 +5449,7 @@ "id": "10", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -5460,7 +5460,7 @@ "id": "11", "seqid": 5, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "dR", @@ -5471,8 +5471,8 @@ "id": "12", "seqid": 5, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5482,7 +5482,7 @@ "id": "13", "seqid": 4, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", @@ -5493,7 +5493,7 @@ "id": "14", "seqid": 6, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "dR", @@ -5504,8 +5504,8 @@ "id": "15", "seqid": 6, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5515,7 +5515,7 @@ "id": "16", "seqid": 5, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "P", @@ -5526,7 +5526,7 @@ "id": "17", "seqid": 7, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "dR", @@ -5537,8 +5537,8 @@ "id": "18", "seqid": 7, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5548,7 +5548,7 @@ "id": "19", "seqid": 6, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "P", @@ -5559,7 +5559,7 @@ "id": "20", "seqid": 8, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "dR", @@ -5570,8 +5570,8 @@ "id": "21", "seqid": 8, "position": { - "x": 14.000000, - "y": -1.000000 + "x": 21.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5581,7 +5581,7 @@ "id": "22", "seqid": 7, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "P", @@ -5592,7 +5592,7 @@ "id": "23", "seqid": 9, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "dR", @@ -5603,8 +5603,8 @@ "id": "24", "seqid": 9, "position": { - "x": 16.000000, - "y": -1.000000 + "x": 24.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5614,7 +5614,7 @@ "id": "25", "seqid": 8, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "P", @@ -5625,7 +5625,7 @@ "id": "26", "seqid": 10, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "dR", @@ -5636,8 +5636,8 @@ "id": "27", "seqid": 10, "position": { - "x": 18.000000, - "y": -1.000000 + "x": 27.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5647,7 +5647,7 @@ "id": "28", "seqid": 9, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "P", @@ -5658,7 +5658,7 @@ "id": "29", "seqid": 11, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "dR", @@ -5669,8 +5669,8 @@ "id": "30", "seqid": 11, "position": { - "x": 20.000000, - "y": -1.000000 + "x": 30.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5680,7 +5680,7 @@ "id": "31", "seqid": 10, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "P", @@ -5691,7 +5691,7 @@ "id": "32", "seqid": 12, "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "alias": "dR", @@ -5702,8 +5702,8 @@ "id": "33", "seqid": 12, "position": { - "x": 22.000000, - "y": -1.000000 + "x": 33.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5713,7 +5713,7 @@ "id": "34", "seqid": 11, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "P", @@ -5724,7 +5724,7 @@ "id": "35", "seqid": 13, "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "alias": "dR", @@ -5735,8 +5735,8 @@ "id": "36", "seqid": 13, "position": { - "x": 24.000000, - "y": -1.000000 + "x": 36.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5746,7 +5746,7 @@ "id": "37", "seqid": 12, "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "alias": "P", @@ -5757,7 +5757,7 @@ "id": "38", "seqid": 14, "position": { - "x": 26.000000, + "x": 39.000000, "y": -0.000000 }, "alias": "dR", @@ -5768,8 +5768,8 @@ "id": "39", "seqid": 14, "position": { - "x": 26.000000, - "y": -1.000000 + "x": 39.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5779,7 +5779,7 @@ "id": "40", "seqid": 13, "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "alias": "P", @@ -5790,7 +5790,7 @@ "id": "41", "seqid": 15, "position": { - "x": 28.000000, + "x": 42.000000, "y": -0.000000 }, "alias": "dR", @@ -5801,8 +5801,8 @@ "id": "42", "seqid": 15, "position": { - "x": 28.000000, - "y": -1.000000 + "x": 42.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5812,7 +5812,7 @@ "id": "43", "seqid": 14, "position": { - "x": 27.000000, + "x": 40.500000, "y": -0.000000 }, "alias": "P", @@ -5823,7 +5823,7 @@ "id": "44", "seqid": 16, "position": { - "x": 30.000000, + "x": 45.000000, "y": -0.000000 }, "alias": "dR", @@ -5834,8 +5834,8 @@ "id": "45", "seqid": 16, "position": { - "x": 30.000000, - "y": -1.000000 + "x": 45.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5845,7 +5845,7 @@ "id": "46", "seqid": 15, "position": { - "x": 29.000000, + "x": 43.500000, "y": -0.000000 }, "alias": "P", @@ -5856,7 +5856,7 @@ "id": "47", "seqid": 17, "position": { - "x": 32.000000, + "x": 48.000000, "y": -0.000000 }, "alias": "dR", @@ -5867,8 +5867,8 @@ "id": "48", "seqid": 17, "position": { - "x": 32.000000, - "y": -1.000000 + "x": 48.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5878,7 +5878,7 @@ "id": "49", "seqid": 16, "position": { - "x": 31.000000, + "x": 46.500000, "y": -0.000000 }, "alias": "P", @@ -5889,7 +5889,7 @@ "id": "50", "seqid": 18, "position": { - "x": 34.000000, + "x": 51.000000, "y": -0.000000 }, "alias": "dR", @@ -5900,8 +5900,8 @@ "id": "51", "seqid": 18, "position": { - "x": 34.000000, - "y": -1.000000 + "x": 51.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5911,7 +5911,7 @@ "id": "52", "seqid": 17, "position": { - "x": 33.000000, + "x": 49.500000, "y": -0.000000 }, "alias": "P", @@ -5922,7 +5922,7 @@ "id": "53", "seqid": 19, "position": { - "x": 36.000000, + "x": 54.000000, "y": -0.000000 }, "alias": "dR", @@ -5933,8 +5933,8 @@ "id": "54", "seqid": 19, "position": { - "x": 36.000000, - "y": -1.000000 + "x": 54.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5944,7 +5944,7 @@ "id": "55", "seqid": 18, "position": { - "x": 35.000000, + "x": 52.500000, "y": -0.000000 }, "alias": "P", @@ -5955,7 +5955,7 @@ "id": "56", "seqid": 20, "position": { - "x": 38.000000, + "x": 57.000000, "y": -0.000000 }, "alias": "dR", @@ -5966,8 +5966,8 @@ "id": "57", "seqid": 20, "position": { - "x": 38.000000, - "y": -1.000000 + "x": 57.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -5977,7 +5977,7 @@ "id": "58", "seqid": 19, "position": { - "x": 37.000000, + "x": 55.500000, "y": -0.000000 }, "alias": "P", @@ -5988,7 +5988,7 @@ "id": "59", "seqid": 21, "position": { - "x": 40.000000, + "x": 60.000000, "y": -0.000000 }, "alias": "dR", @@ -5999,8 +5999,8 @@ "id": "60", "seqid": 21, "position": { - "x": 40.000000, - "y": -1.000000 + "x": 60.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6010,7 +6010,7 @@ "id": "61", "seqid": 20, "position": { - "x": 39.000000, + "x": 58.500000, "y": -0.000000 }, "alias": "P", @@ -6021,7 +6021,7 @@ "id": "62", "seqid": 22, "position": { - "x": 42.000000, + "x": 63.000000, "y": -0.000000 }, "alias": "dR", @@ -6032,8 +6032,8 @@ "id": "63", "seqid": 22, "position": { - "x": 42.000000, - "y": -1.000000 + "x": 63.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6043,7 +6043,7 @@ "id": "64", "seqid": 21, "position": { - "x": 41.000000, + "x": 61.500000, "y": -0.000000 }, "alias": "P", @@ -6054,7 +6054,7 @@ "id": "65", "seqid": 23, "position": { - "x": 44.000000, + "x": 66.000000, "y": -0.000000 }, "alias": "dR", @@ -6065,8 +6065,8 @@ "id": "66", "seqid": 23, "position": { - "x": 44.000000, - "y": -1.000000 + "x": 66.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6076,7 +6076,7 @@ "id": "67", "seqid": 22, "position": { - "x": 43.000000, + "x": 64.500000, "y": -0.000000 }, "alias": "P", @@ -6087,7 +6087,7 @@ "id": "68", "seqid": 24, "position": { - "x": 46.000000, + "x": 69.000000, "y": -0.000000 }, "alias": "dR", @@ -6098,8 +6098,8 @@ "id": "69", "seqid": 24, "position": { - "x": 46.000000, - "y": -1.000000 + "x": 69.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6109,7 +6109,7 @@ "id": "70", "seqid": 23, "position": { - "x": 45.000000, + "x": 67.500000, "y": -0.000000 }, "alias": "P", @@ -6120,7 +6120,7 @@ "id": "71", "seqid": 25, "position": { - "x": 48.000000, + "x": 72.000000, "y": -0.000000 }, "alias": "dR", @@ -6131,8 +6131,8 @@ "id": "72", "seqid": 25, "position": { - "x": 48.000000, - "y": -1.000000 + "x": 72.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6142,7 +6142,7 @@ "id": "73", "seqid": 24, "position": { - "x": 47.000000, + "x": 70.500000, "y": -0.000000 }, "alias": "P", @@ -6153,7 +6153,7 @@ "id": "74", "seqid": 26, "position": { - "x": 50.000000, + "x": 75.000000, "y": -0.000000 }, "alias": "dR", @@ -6164,8 +6164,8 @@ "id": "75", "seqid": 26, "position": { - "x": 50.000000, - "y": -1.000000 + "x": 75.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6175,7 +6175,7 @@ "id": "76", "seqid": 25, "position": { - "x": 49.000000, + "x": 73.500000, "y": -0.000000 }, "alias": "P", @@ -6186,7 +6186,7 @@ "id": "77", "seqid": 27, "position": { - "x": 52.000000, + "x": 78.000000, "y": -0.000000 }, "alias": "dR", @@ -6197,8 +6197,8 @@ "id": "78", "seqid": 27, "position": { - "x": 52.000000, - "y": -1.000000 + "x": 78.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6208,7 +6208,7 @@ "id": "79", "seqid": 26, "position": { - "x": 51.000000, + "x": 76.500000, "y": -0.000000 }, "alias": "P", @@ -6219,7 +6219,7 @@ "id": "80", "seqid": 28, "position": { - "x": 54.000000, + "x": 81.000000, "y": -0.000000 }, "alias": "dR", @@ -6230,8 +6230,8 @@ "id": "81", "seqid": 28, "position": { - "x": 54.000000, - "y": -1.000000 + "x": 81.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6241,7 +6241,7 @@ "id": "82", "seqid": 27, "position": { - "x": 53.000000, + "x": 79.500000, "y": -0.000000 }, "alias": "P", @@ -6252,7 +6252,7 @@ "id": "83", "seqid": 29, "position": { - "x": 56.000000, + "x": 84.000000, "y": -0.000000 }, "alias": "dR", @@ -6263,8 +6263,8 @@ "id": "84", "seqid": 29, "position": { - "x": 56.000000, - "y": -1.000000 + "x": 84.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6274,7 +6274,7 @@ "id": "85", "seqid": 28, "position": { - "x": 55.000000, + "x": 82.500000, "y": -0.000000 }, "alias": "P", @@ -6285,7 +6285,7 @@ "id": "86", "seqid": 30, "position": { - "x": 58.000000, + "x": 87.000000, "y": -0.000000 }, "alias": "dR", @@ -6296,8 +6296,8 @@ "id": "87", "seqid": 30, "position": { - "x": 58.000000, - "y": -1.000000 + "x": 87.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6307,7 +6307,7 @@ "id": "88", "seqid": 29, "position": { - "x": 57.000000, + "x": 85.500000, "y": -0.000000 }, "alias": "P", @@ -6318,7 +6318,7 @@ "id": "89", "seqid": 31, "position": { - "x": 60.000000, + "x": 90.000000, "y": -0.000000 }, "alias": "dR", @@ -6329,8 +6329,8 @@ "id": "90", "seqid": 31, "position": { - "x": 60.000000, - "y": -1.000000 + "x": 90.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6340,7 +6340,7 @@ "id": "91", "seqid": 30, "position": { - "x": 59.000000, + "x": 88.500000, "y": -0.000000 }, "alias": "P", @@ -6351,7 +6351,7 @@ "id": "92", "seqid": 32, "position": { - "x": 62.000000, + "x": 93.000000, "y": -0.000000 }, "alias": "dR", @@ -6362,8 +6362,8 @@ "id": "93", "seqid": 32, "position": { - "x": 62.000000, - "y": -1.000000 + "x": 93.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6373,7 +6373,7 @@ "id": "94", "seqid": 31, "position": { - "x": 61.000000, + "x": 91.500000, "y": -0.000000 }, "alias": "P", @@ -6384,7 +6384,7 @@ "id": "95", "seqid": 33, "position": { - "x": 64.000000, + "x": 96.000000, "y": -0.000000 }, "alias": "dR", @@ -6395,8 +6395,8 @@ "id": "96", "seqid": 33, "position": { - "x": 64.000000, - "y": -1.000000 + "x": 96.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6406,7 +6406,7 @@ "id": "97", "seqid": 32, "position": { - "x": 63.000000, + "x": 94.500000, "y": -0.000000 }, "alias": "P", @@ -6417,7 +6417,7 @@ "id": "98", "seqid": 34, "position": { - "x": 66.000000, + "x": 99.000000, "y": -0.000000 }, "alias": "dR", @@ -6428,8 +6428,8 @@ "id": "99", "seqid": 34, "position": { - "x": 66.000000, - "y": -1.000000 + "x": 99.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6439,7 +6439,7 @@ "id": "100", "seqid": 33, "position": { - "x": 65.000000, + "x": 97.500000, "y": -0.000000 }, "alias": "P", @@ -6450,7 +6450,7 @@ "id": "101", "seqid": 35, "position": { - "x": 68.000000, + "x": 102.000000, "y": -0.000000 }, "alias": "dR", @@ -6461,8 +6461,8 @@ "id": "102", "seqid": 35, "position": { - "x": 68.000000, - "y": -1.000000 + "x": 102.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6472,7 +6472,7 @@ "id": "103", "seqid": 34, "position": { - "x": 67.000000, + "x": 100.500000, "y": -0.000000 }, "alias": "P", @@ -6483,7 +6483,7 @@ "id": "104", "seqid": 36, "position": { - "x": 70.000000, + "x": 105.000000, "y": -0.000000 }, "alias": "dR", @@ -6494,8 +6494,8 @@ "id": "105", "seqid": 36, "position": { - "x": 70.000000, - "y": -1.000000 + "x": 105.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6505,7 +6505,7 @@ "id": "106", "seqid": 35, "position": { - "x": 69.000000, + "x": 103.500000, "y": -0.000000 }, "alias": "P", @@ -6516,7 +6516,7 @@ "id": "107", "seqid": 37, "position": { - "x": 72.000000, + "x": 108.000000, "y": -0.000000 }, "alias": "dR", @@ -6527,8 +6527,8 @@ "id": "108", "seqid": 37, "position": { - "x": 72.000000, - "y": -1.000000 + "x": 108.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6538,7 +6538,7 @@ "id": "109", "seqid": 36, "position": { - "x": 71.000000, + "x": 106.500000, "y": -0.000000 }, "alias": "P", @@ -6549,7 +6549,7 @@ "id": "110", "seqid": 38, "position": { - "x": 74.000000, + "x": 111.000000, "y": -0.000000 }, "alias": "dR", @@ -6560,8 +6560,8 @@ "id": "111", "seqid": 38, "position": { - "x": 74.000000, - "y": -1.000000 + "x": 111.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6571,7 +6571,7 @@ "id": "112", "seqid": 37, "position": { - "x": 73.000000, + "x": 109.500000, "y": -0.000000 }, "alias": "P", @@ -6582,7 +6582,7 @@ "id": "113", "seqid": 39, "position": { - "x": 76.000000, + "x": 114.000000, "y": -0.000000 }, "alias": "dR", @@ -6593,8 +6593,8 @@ "id": "114", "seqid": 39, "position": { - "x": 76.000000, - "y": -1.000000 + "x": 114.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6604,7 +6604,7 @@ "id": "115", "seqid": 38, "position": { - "x": 75.000000, + "x": 112.500000, "y": -0.000000 }, "alias": "P", @@ -6615,7 +6615,7 @@ "id": "116", "seqid": 40, "position": { - "x": 78.000000, + "x": 117.000000, "y": -0.000000 }, "alias": "dR", @@ -6626,8 +6626,8 @@ "id": "117", "seqid": 40, "position": { - "x": 78.000000, - "y": -1.000000 + "x": 117.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6637,7 +6637,7 @@ "id": "118", "seqid": 39, "position": { - "x": 77.000000, + "x": 115.500000, "y": -0.000000 }, "alias": "P", @@ -6648,7 +6648,7 @@ "id": "119", "seqid": 41, "position": { - "x": 80.000000, + "x": 120.000000, "y": -0.000000 }, "alias": "dR", @@ -6659,8 +6659,8 @@ "id": "120", "seqid": 41, "position": { - "x": 80.000000, - "y": -1.000000 + "x": 120.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6670,7 +6670,7 @@ "id": "121", "seqid": 40, "position": { - "x": 79.000000, + "x": 118.500000, "y": -0.000000 }, "alias": "P", @@ -6681,7 +6681,7 @@ "id": "122", "seqid": 42, "position": { - "x": 82.000000, + "x": 123.000000, "y": -0.000000 }, "alias": "dR", @@ -6692,8 +6692,8 @@ "id": "123", "seqid": 42, "position": { - "x": 82.000000, - "y": -1.000000 + "x": 123.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6703,7 +6703,7 @@ "id": "124", "seqid": 41, "position": { - "x": 81.000000, + "x": 121.500000, "y": -0.000000 }, "alias": "P", @@ -6714,7 +6714,7 @@ "id": "125", "seqid": 43, "position": { - "x": 84.000000, + "x": 126.000000, "y": -0.000000 }, "alias": "dR", @@ -6725,8 +6725,8 @@ "id": "126", "seqid": 43, "position": { - "x": 84.000000, - "y": -1.000000 + "x": 126.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6736,7 +6736,7 @@ "id": "127", "seqid": 42, "position": { - "x": 83.000000, + "x": 124.500000, "y": -0.000000 }, "alias": "P", @@ -6747,7 +6747,7 @@ "id": "128", "seqid": 44, "position": { - "x": 86.000000, + "x": 129.000000, "y": -0.000000 }, "alias": "dR", @@ -6758,8 +6758,8 @@ "id": "129", "seqid": 44, "position": { - "x": 86.000000, - "y": -1.000000 + "x": 129.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6769,7 +6769,7 @@ "id": "130", "seqid": 43, "position": { - "x": 85.000000, + "x": 127.500000, "y": -0.000000 }, "alias": "P", @@ -6780,7 +6780,7 @@ "id": "131", "seqid": 45, "position": { - "x": 88.000000, + "x": 132.000000, "y": -0.000000 }, "alias": "dR", @@ -6791,8 +6791,8 @@ "id": "132", "seqid": 45, "position": { - "x": 88.000000, - "y": -1.000000 + "x": 132.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6802,7 +6802,7 @@ "id": "133", "seqid": 44, "position": { - "x": 87.000000, + "x": 130.500000, "y": -0.000000 }, "alias": "P", @@ -6813,7 +6813,7 @@ "id": "134", "seqid": 46, "position": { - "x": 90.000000, + "x": 135.000000, "y": -0.000000 }, "alias": "dR", @@ -6824,8 +6824,8 @@ "id": "135", "seqid": 46, "position": { - "x": 90.000000, - "y": -1.000000 + "x": 135.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6835,7 +6835,7 @@ "id": "136", "seqid": 45, "position": { - "x": 89.000000, + "x": 133.500000, "y": -0.000000 }, "alias": "P", @@ -6846,7 +6846,7 @@ "id": "137", "seqid": 47, "position": { - "x": 92.000000, + "x": 138.000000, "y": -0.000000 }, "alias": "dR", @@ -6857,8 +6857,8 @@ "id": "138", "seqid": 47, "position": { - "x": 92.000000, - "y": -1.000000 + "x": 138.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6868,7 +6868,7 @@ "id": "139", "seqid": 46, "position": { - "x": 91.000000, + "x": 136.500000, "y": -0.000000 }, "alias": "P", @@ -6879,7 +6879,7 @@ "id": "140", "seqid": 48, "position": { - "x": 94.000000, + "x": 141.000000, "y": -0.000000 }, "alias": "dR", @@ -6890,8 +6890,8 @@ "id": "141", "seqid": 48, "position": { - "x": 94.000000, - "y": -1.000000 + "x": 141.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -6901,7 +6901,7 @@ "id": "142", "seqid": 47, "position": { - "x": 93.000000, + "x": 139.500000, "y": -0.000000 }, "alias": "P", @@ -6912,7 +6912,7 @@ "id": "143", "seqid": 49, "position": { - "x": 96.000000, + "x": 144.000000, "y": -0.000000 }, "alias": "dR", @@ -6923,8 +6923,8 @@ "id": "144", "seqid": 49, "position": { - "x": 96.000000, - "y": -1.000000 + "x": 144.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6934,7 +6934,7 @@ "id": "145", "seqid": 48, "position": { - "x": 95.000000, + "x": 142.500000, "y": -0.000000 }, "alias": "P", @@ -6945,7 +6945,7 @@ "id": "146", "seqid": 50, "position": { - "x": 98.000000, + "x": 147.000000, "y": -0.000000 }, "alias": "dR", @@ -6956,8 +6956,8 @@ "id": "147", "seqid": 50, "position": { - "x": 98.000000, - "y": -1.000000 + "x": 147.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6967,7 +6967,7 @@ "id": "148", "seqid": 49, "position": { - "x": 97.000000, + "x": 145.500000, "y": -0.000000 }, "alias": "P", @@ -6978,7 +6978,7 @@ "id": "149", "seqid": 51, "position": { - "x": 100.000000, + "x": 150.000000, "y": -0.000000 }, "alias": "dR", @@ -6989,8 +6989,8 @@ "id": "150", "seqid": 51, "position": { - "x": 100.000000, - "y": -1.000000 + "x": 150.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7000,7 +7000,7 @@ "id": "151", "seqid": 50, "position": { - "x": 99.000000, + "x": 148.500000, "y": -0.000000 }, "alias": "P", @@ -7011,7 +7011,7 @@ "id": "152", "seqid": 52, "position": { - "x": 102.000000, + "x": 153.000000, "y": -0.000000 }, "alias": "dR", @@ -7022,8 +7022,8 @@ "id": "153", "seqid": 52, "position": { - "x": 102.000000, - "y": -1.000000 + "x": 153.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7033,7 +7033,7 @@ "id": "154", "seqid": 51, "position": { - "x": 101.000000, + "x": 151.500000, "y": -0.000000 }, "alias": "P", @@ -7044,7 +7044,7 @@ "id": "155", "seqid": 53, "position": { - "x": 104.000000, + "x": 156.000000, "y": -0.000000 }, "alias": "dR", @@ -7055,8 +7055,8 @@ "id": "156", "seqid": 53, "position": { - "x": 104.000000, - "y": -1.000000 + "x": 156.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7066,7 +7066,7 @@ "id": "157", "seqid": 52, "position": { - "x": 103.000000, + "x": 154.500000, "y": -0.000000 }, "alias": "P", @@ -7077,7 +7077,7 @@ "id": "158", "seqid": 54, "position": { - "x": 106.000000, + "x": 159.000000, "y": -0.000000 }, "alias": "dR", @@ -7088,8 +7088,8 @@ "id": "159", "seqid": 54, "position": { - "x": 106.000000, - "y": -1.000000 + "x": 159.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7099,7 +7099,7 @@ "id": "160", "seqid": 53, "position": { - "x": 105.000000, + "x": 157.500000, "y": -0.000000 }, "alias": "P", @@ -7110,7 +7110,7 @@ "id": "161", "seqid": 55, "position": { - "x": 108.000000, + "x": 162.000000, "y": -0.000000 }, "alias": "dR", @@ -7121,8 +7121,8 @@ "id": "162", "seqid": 55, "position": { - "x": 108.000000, - "y": -1.000000 + "x": 162.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7132,7 +7132,7 @@ "id": "163", "seqid": 54, "position": { - "x": 107.000000, + "x": 160.500000, "y": -0.000000 }, "alias": "P", @@ -7143,7 +7143,7 @@ "id": "164", "seqid": 56, "position": { - "x": 110.000000, + "x": 165.000000, "y": -0.000000 }, "alias": "dR", @@ -7154,8 +7154,8 @@ "id": "165", "seqid": 56, "position": { - "x": 110.000000, - "y": -1.000000 + "x": 165.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7165,7 +7165,7 @@ "id": "166", "seqid": 55, "position": { - "x": 109.000000, + "x": 163.500000, "y": -0.000000 }, "alias": "P", @@ -7176,7 +7176,7 @@ "id": "167", "seqid": 57, "position": { - "x": 112.000000, + "x": 168.000000, "y": -0.000000 }, "alias": "dR", @@ -7187,8 +7187,8 @@ "id": "168", "seqid": 57, "position": { - "x": 112.000000, - "y": -1.000000 + "x": 168.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7198,7 +7198,7 @@ "id": "169", "seqid": 56, "position": { - "x": 111.000000, + "x": 166.500000, "y": -0.000000 }, "alias": "P", @@ -7209,7 +7209,7 @@ "id": "170", "seqid": 58, "position": { - "x": 114.000000, + "x": 171.000000, "y": -0.000000 }, "alias": "dR", @@ -7220,8 +7220,8 @@ "id": "171", "seqid": 58, "position": { - "x": 114.000000, - "y": -1.000000 + "x": 171.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7231,7 +7231,7 @@ "id": "172", "seqid": 57, "position": { - "x": 113.000000, + "x": 169.500000, "y": -0.000000 }, "alias": "P", @@ -7242,7 +7242,7 @@ "id": "173", "seqid": 59, "position": { - "x": 116.000000, + "x": 174.000000, "y": -0.000000 }, "alias": "dR", @@ -7253,8 +7253,8 @@ "id": "174", "seqid": 59, "position": { - "x": 116.000000, - "y": -1.000000 + "x": 174.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7264,7 +7264,7 @@ "id": "175", "seqid": 58, "position": { - "x": 115.000000, + "x": 172.500000, "y": -0.000000 }, "alias": "P", @@ -7275,7 +7275,7 @@ "id": "176", "seqid": 60, "position": { - "x": 118.000000, + "x": 177.000000, "y": -0.000000 }, "alias": "dR", @@ -7286,8 +7286,8 @@ "id": "177", "seqid": 60, "position": { - "x": 118.000000, - "y": -1.000000 + "x": 177.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7297,7 +7297,7 @@ "id": "178", "seqid": 59, "position": { - "x": 117.000000, + "x": 175.500000, "y": -0.000000 }, "alias": "P", @@ -7308,7 +7308,7 @@ "id": "179", "seqid": 61, "position": { - "x": 120.000000, + "x": 180.000000, "y": -0.000000 }, "alias": "dR", @@ -7319,8 +7319,8 @@ "id": "180", "seqid": 61, "position": { - "x": 120.000000, - "y": -1.000000 + "x": 180.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7330,7 +7330,7 @@ "id": "181", "seqid": 60, "position": { - "x": 119.000000, + "x": 178.500000, "y": -0.000000 }, "alias": "P", @@ -7341,7 +7341,7 @@ "id": "182", "seqid": 62, "position": { - "x": 122.000000, + "x": 183.000000, "y": -0.000000 }, "alias": "dR", @@ -7352,8 +7352,8 @@ "id": "183", "seqid": 62, "position": { - "x": 122.000000, - "y": -1.000000 + "x": 183.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7363,7 +7363,7 @@ "id": "184", "seqid": 61, "position": { - "x": 121.000000, + "x": 181.500000, "y": -0.000000 }, "alias": "P", @@ -7374,7 +7374,7 @@ "id": "185", "seqid": 63, "position": { - "x": 124.000000, + "x": 186.000000, "y": -0.000000 }, "alias": "dR", @@ -7385,8 +7385,8 @@ "id": "186", "seqid": 63, "position": { - "x": 124.000000, - "y": -1.000000 + "x": 186.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7396,7 +7396,7 @@ "id": "187", "seqid": 62, "position": { - "x": 123.000000, + "x": 184.500000, "y": -0.000000 }, "alias": "P", @@ -7407,7 +7407,7 @@ "id": "188", "seqid": 64, "position": { - "x": 126.000000, + "x": 189.000000, "y": -0.000000 }, "alias": "dR", @@ -7418,8 +7418,8 @@ "id": "189", "seqid": 64, "position": { - "x": 126.000000, - "y": -1.000000 + "x": 189.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7429,7 +7429,7 @@ "id": "190", "seqid": 63, "position": { - "x": 125.000000, + "x": 187.500000, "y": -0.000000 }, "alias": "P", @@ -7440,7 +7440,7 @@ "id": "191", "seqid": 65, "position": { - "x": 128.000000, + "x": 192.000000, "y": -0.000000 }, "alias": "dR", @@ -7451,8 +7451,8 @@ "id": "192", "seqid": 65, "position": { - "x": 128.000000, - "y": -1.000000 + "x": 192.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7462,7 +7462,7 @@ "id": "193", "seqid": 64, "position": { - "x": 127.000000, + "x": 190.500000, "y": -0.000000 }, "alias": "P", @@ -7473,7 +7473,7 @@ "id": "194", "seqid": 66, "position": { - "x": 130.000000, + "x": 195.000000, "y": -0.000000 }, "alias": "dR", @@ -7484,8 +7484,8 @@ "id": "195", "seqid": 66, "position": { - "x": 130.000000, - "y": -1.000000 + "x": 195.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7495,7 +7495,7 @@ "id": "196", "seqid": 65, "position": { - "x": 129.000000, + "x": 193.500000, "y": -0.000000 }, "alias": "P", @@ -7506,7 +7506,7 @@ "id": "197", "seqid": 67, "position": { - "x": 132.000000, + "x": 198.000000, "y": -0.000000 }, "alias": "dR", @@ -7517,8 +7517,8 @@ "id": "198", "seqid": 67, "position": { - "x": 132.000000, - "y": -1.000000 + "x": 198.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7528,7 +7528,7 @@ "id": "199", "seqid": 66, "position": { - "x": 131.000000, + "x": 196.500000, "y": -0.000000 }, "alias": "P", @@ -7539,7 +7539,7 @@ "id": "200", "seqid": 68, "position": { - "x": 134.000000, + "x": 201.000000, "y": -0.000000 }, "alias": "dR", @@ -7550,8 +7550,8 @@ "id": "201", "seqid": 68, "position": { - "x": 134.000000, - "y": -1.000000 + "x": 201.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7561,7 +7561,7 @@ "id": "202", "seqid": 67, "position": { - "x": 133.000000, + "x": 199.500000, "y": -0.000000 }, "alias": "P", @@ -7572,7 +7572,7 @@ "id": "203", "seqid": 69, "position": { - "x": 136.000000, + "x": 204.000000, "y": -0.000000 }, "alias": "dR", @@ -7583,8 +7583,8 @@ "id": "204", "seqid": 69, "position": { - "x": 136.000000, - "y": -1.000000 + "x": 204.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7594,7 +7594,7 @@ "id": "205", "seqid": 68, "position": { - "x": 135.000000, + "x": 202.500000, "y": -0.000000 }, "alias": "P", @@ -7605,7 +7605,7 @@ "id": "206", "seqid": 70, "position": { - "x": 138.000000, + "x": 207.000000, "y": -0.000000 }, "alias": "dR", @@ -7616,8 +7616,8 @@ "id": "207", "seqid": 70, "position": { - "x": 138.000000, - "y": -1.000000 + "x": 207.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7627,7 +7627,7 @@ "id": "208", "seqid": 69, "position": { - "x": 137.000000, + "x": 205.500000, "y": -0.000000 }, "alias": "P", @@ -7638,7 +7638,7 @@ "id": "209", "seqid": 71, "position": { - "x": 140.000000, + "x": 210.000000, "y": -0.000000 }, "alias": "dR", @@ -7649,8 +7649,8 @@ "id": "210", "seqid": 71, "position": { - "x": 140.000000, - "y": -1.000000 + "x": 210.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7660,7 +7660,7 @@ "id": "211", "seqid": 70, "position": { - "x": 139.000000, + "x": 208.500000, "y": -0.000000 }, "alias": "P", @@ -7671,7 +7671,7 @@ "id": "212", "seqid": 72, "position": { - "x": 142.000000, + "x": 213.000000, "y": -0.000000 }, "alias": "dR", @@ -7682,8 +7682,8 @@ "id": "213", "seqid": 72, "position": { - "x": 142.000000, - "y": -1.000000 + "x": 213.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7693,7 +7693,7 @@ "id": "214", "seqid": 71, "position": { - "x": 141.000000, + "x": 211.500000, "y": -0.000000 }, "alias": "P", @@ -7704,7 +7704,7 @@ "id": "215", "seqid": 73, "position": { - "x": 144.000000, + "x": 216.000000, "y": -0.000000 }, "alias": "dR", @@ -7715,8 +7715,8 @@ "id": "216", "seqid": 73, "position": { - "x": 144.000000, - "y": -1.000000 + "x": 216.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7726,7 +7726,7 @@ "id": "217", "seqid": 72, "position": { - "x": 143.000000, + "x": 214.500000, "y": -0.000000 }, "alias": "P", @@ -7737,7 +7737,7 @@ "id": "218", "seqid": 74, "position": { - "x": 146.000000, + "x": 219.000000, "y": -0.000000 }, "alias": "dR", @@ -7748,8 +7748,8 @@ "id": "219", "seqid": 74, "position": { - "x": 146.000000, - "y": -1.000000 + "x": 219.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7759,7 +7759,7 @@ "id": "220", "seqid": 73, "position": { - "x": 145.000000, + "x": 217.500000, "y": -0.000000 }, "alias": "P", @@ -7770,7 +7770,7 @@ "id": "221", "seqid": 75, "position": { - "x": 148.000000, + "x": 222.000000, "y": -0.000000 }, "alias": "dR", @@ -7781,8 +7781,8 @@ "id": "222", "seqid": 75, "position": { - "x": 148.000000, - "y": -1.000000 + "x": 222.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7792,7 +7792,7 @@ "id": "223", "seqid": 74, "position": { - "x": 147.000000, + "x": 220.500000, "y": -0.000000 }, "alias": "P", @@ -7803,7 +7803,7 @@ "id": "224", "seqid": 76, "position": { - "x": 150.000000, + "x": 225.000000, "y": -0.000000 }, "alias": "dR", @@ -7814,8 +7814,8 @@ "id": "225", "seqid": 76, "position": { - "x": 150.000000, - "y": -1.000000 + "x": 225.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7825,7 +7825,7 @@ "id": "226", "seqid": 75, "position": { - "x": 149.000000, + "x": 223.500000, "y": -0.000000 }, "alias": "P", @@ -7836,7 +7836,7 @@ "id": "227", "seqid": 77, "position": { - "x": 152.000000, + "x": 228.000000, "y": -0.000000 }, "alias": "dR", @@ -7847,8 +7847,8 @@ "id": "228", "seqid": 77, "position": { - "x": 152.000000, - "y": -1.000000 + "x": 228.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7858,7 +7858,7 @@ "id": "229", "seqid": 76, "position": { - "x": 151.000000, + "x": 226.500000, "y": -0.000000 }, "alias": "P", @@ -7869,7 +7869,7 @@ "id": "230", "seqid": 78, "position": { - "x": 154.000000, + "x": 231.000000, "y": -0.000000 }, "alias": "dR", @@ -7880,8 +7880,8 @@ "id": "231", "seqid": 78, "position": { - "x": 154.000000, - "y": -1.000000 + "x": 231.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7891,7 +7891,7 @@ "id": "232", "seqid": 77, "position": { - "x": 153.000000, + "x": 229.500000, "y": -0.000000 }, "alias": "P", @@ -7902,7 +7902,7 @@ "id": "233", "seqid": 79, "position": { - "x": 156.000000, + "x": 234.000000, "y": -0.000000 }, "alias": "dR", @@ -7913,8 +7913,8 @@ "id": "234", "seqid": 79, "position": { - "x": 156.000000, - "y": -1.000000 + "x": 234.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -7924,7 +7924,7 @@ "id": "235", "seqid": 78, "position": { - "x": 155.000000, + "x": 232.500000, "y": -0.000000 }, "alias": "P", @@ -7935,7 +7935,7 @@ "id": "236", "seqid": 80, "position": { - "x": 158.000000, + "x": 237.000000, "y": -0.000000 }, "alias": "dR", @@ -7946,8 +7946,8 @@ "id": "237", "seqid": 80, "position": { - "x": 158.000000, - "y": -1.000000 + "x": 237.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7957,7 +7957,7 @@ "id": "238", "seqid": 79, "position": { - "x": 157.000000, + "x": 235.500000, "y": -0.000000 }, "alias": "P", @@ -7968,7 +7968,7 @@ "id": "239", "seqid": 81, "position": { - "x": 160.000000, + "x": 240.000000, "y": -0.000000 }, "alias": "dR", @@ -7979,8 +7979,8 @@ "id": "240", "seqid": 81, "position": { - "x": 160.000000, - "y": -1.000000 + "x": 240.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7990,7 +7990,7 @@ "id": "241", "seqid": 80, "position": { - "x": 159.000000, + "x": 238.500000, "y": -0.000000 }, "alias": "P", @@ -8001,7 +8001,7 @@ "id": "242", "seqid": 82, "position": { - "x": 162.000000, + "x": 243.000000, "y": -0.000000 }, "alias": "dR", @@ -8012,8 +8012,8 @@ "id": "243", "seqid": 82, "position": { - "x": 162.000000, - "y": -1.000000 + "x": 243.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8023,7 +8023,7 @@ "id": "244", "seqid": 81, "position": { - "x": 161.000000, + "x": 241.500000, "y": -0.000000 }, "alias": "P", @@ -8034,7 +8034,7 @@ "id": "245", "seqid": 83, "position": { - "x": 164.000000, + "x": 246.000000, "y": -0.000000 }, "alias": "dR", @@ -8045,8 +8045,8 @@ "id": "246", "seqid": 83, "position": { - "x": 164.000000, - "y": -1.000000 + "x": 246.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8056,7 +8056,7 @@ "id": "247", "seqid": 82, "position": { - "x": 163.000000, + "x": 244.500000, "y": -0.000000 }, "alias": "P", @@ -8067,7 +8067,7 @@ "id": "248", "seqid": 84, "position": { - "x": 166.000000, + "x": 249.000000, "y": -0.000000 }, "alias": "dR", @@ -8078,8 +8078,8 @@ "id": "249", "seqid": 84, "position": { - "x": 166.000000, - "y": -1.000000 + "x": 249.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8089,7 +8089,7 @@ "id": "250", "seqid": 83, "position": { - "x": 165.000000, + "x": 247.500000, "y": -0.000000 }, "alias": "P", @@ -8100,7 +8100,7 @@ "id": "251", "seqid": 85, "position": { - "x": 168.000000, + "x": 252.000000, "y": -0.000000 }, "alias": "dR", @@ -8111,8 +8111,8 @@ "id": "252", "seqid": 85, "position": { - "x": 168.000000, - "y": -1.000000 + "x": 252.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8122,7 +8122,7 @@ "id": "253", "seqid": 84, "position": { - "x": 167.000000, + "x": 250.500000, "y": -0.000000 }, "alias": "P", @@ -8133,7 +8133,7 @@ "id": "254", "seqid": 86, "position": { - "x": 170.000000, + "x": 255.000000, "y": -0.000000 }, "alias": "dR", @@ -8144,8 +8144,8 @@ "id": "255", "seqid": 86, "position": { - "x": 170.000000, - "y": -1.000000 + "x": 255.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8155,7 +8155,7 @@ "id": "256", "seqid": 85, "position": { - "x": 169.000000, + "x": 253.500000, "y": -0.000000 }, "alias": "P", @@ -8166,7 +8166,7 @@ "id": "257", "seqid": 87, "position": { - "x": 172.000000, + "x": 258.000000, "y": -0.000000 }, "alias": "dR", @@ -8177,8 +8177,8 @@ "id": "258", "seqid": 87, "position": { - "x": 172.000000, - "y": -1.000000 + "x": 258.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8188,7 +8188,7 @@ "id": "259", "seqid": 86, "position": { - "x": 171.000000, + "x": 256.500000, "y": -0.000000 }, "alias": "P", @@ -8199,7 +8199,7 @@ "id": "260", "seqid": 88, "position": { - "x": 174.000000, + "x": 261.000000, "y": -0.000000 }, "alias": "dR", @@ -8210,8 +8210,8 @@ "id": "261", "seqid": 88, "position": { - "x": 174.000000, - "y": -1.000000 + "x": 261.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8221,7 +8221,7 @@ "id": "262", "seqid": 87, "position": { - "x": 173.000000, + "x": 259.500000, "y": -0.000000 }, "alias": "P", @@ -8232,7 +8232,7 @@ "id": "263", "seqid": 89, "position": { - "x": 176.000000, + "x": 264.000000, "y": -0.000000 }, "alias": "dR", @@ -8243,8 +8243,8 @@ "id": "264", "seqid": 89, "position": { - "x": 176.000000, - "y": -1.000000 + "x": 264.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8254,7 +8254,7 @@ "id": "265", "seqid": 88, "position": { - "x": 175.000000, + "x": 262.500000, "y": -0.000000 }, "alias": "P", @@ -8265,7 +8265,7 @@ "id": "266", "seqid": 90, "position": { - "x": 178.000000, + "x": 267.000000, "y": -0.000000 }, "alias": "dR", @@ -8276,8 +8276,8 @@ "id": "267", "seqid": 90, "position": { - "x": 178.000000, - "y": -1.000000 + "x": 267.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8287,7 +8287,7 @@ "id": "268", "seqid": 89, "position": { - "x": 177.000000, + "x": 265.500000, "y": -0.000000 }, "alias": "P", @@ -8298,7 +8298,7 @@ "id": "269", "seqid": 91, "position": { - "x": 180.000000, + "x": 270.000000, "y": -0.000000 }, "alias": "dR", @@ -8309,8 +8309,8 @@ "id": "270", "seqid": 91, "position": { - "x": 180.000000, - "y": -1.000000 + "x": 270.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8320,7 +8320,7 @@ "id": "271", "seqid": 90, "position": { - "x": 179.000000, + "x": 268.500000, "y": -0.000000 }, "alias": "P", @@ -8331,7 +8331,7 @@ "id": "272", "seqid": 92, "position": { - "x": 182.000000, + "x": 273.000000, "y": -0.000000 }, "alias": "dR", @@ -8342,8 +8342,8 @@ "id": "273", "seqid": 92, "position": { - "x": 182.000000, - "y": -1.000000 + "x": 273.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8353,7 +8353,7 @@ "id": "274", "seqid": 91, "position": { - "x": 181.000000, + "x": 271.500000, "y": -0.000000 }, "alias": "P", @@ -8364,7 +8364,7 @@ "id": "275", "seqid": 93, "position": { - "x": 184.000000, + "x": 276.000000, "y": -0.000000 }, "alias": "dR", @@ -8375,8 +8375,8 @@ "id": "276", "seqid": 93, "position": { - "x": 184.000000, - "y": -1.000000 + "x": 276.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8386,7 +8386,7 @@ "id": "277", "seqid": 92, "position": { - "x": 183.000000, + "x": 274.500000, "y": -0.000000 }, "alias": "P", @@ -8397,7 +8397,7 @@ "id": "278", "seqid": 94, "position": { - "x": 186.000000, + "x": 279.000000, "y": -0.000000 }, "alias": "dR", @@ -8408,8 +8408,8 @@ "id": "279", "seqid": 94, "position": { - "x": 186.000000, - "y": -1.000000 + "x": 279.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8419,7 +8419,7 @@ "id": "280", "seqid": 93, "position": { - "x": 185.000000, + "x": 277.500000, "y": -0.000000 }, "alias": "P", @@ -8430,7 +8430,7 @@ "id": "281", "seqid": 95, "position": { - "x": 188.000000, + "x": 282.000000, "y": -0.000000 }, "alias": "dR", @@ -8441,8 +8441,8 @@ "id": "282", "seqid": 95, "position": { - "x": 188.000000, - "y": -1.000000 + "x": 282.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8452,7 +8452,7 @@ "id": "283", "seqid": 94, "position": { - "x": 187.000000, + "x": 280.500000, "y": -0.000000 }, "alias": "P", @@ -8463,7 +8463,7 @@ "id": "284", "seqid": 96, "position": { - "x": 190.000000, + "x": 285.000000, "y": -0.000000 }, "alias": "dR", @@ -8474,8 +8474,8 @@ "id": "285", "seqid": 96, "position": { - "x": 190.000000, - "y": -1.000000 + "x": 285.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8485,7 +8485,7 @@ "id": "286", "seqid": 95, "position": { - "x": 189.000000, + "x": 283.500000, "y": -0.000000 }, "alias": "P", @@ -8496,7 +8496,7 @@ "id": "287", "seqid": 97, "position": { - "x": 192.000000, + "x": 288.000000, "y": -0.000000 }, "alias": "dR", @@ -8507,8 +8507,8 @@ "id": "288", "seqid": 97, "position": { - "x": 192.000000, - "y": -1.000000 + "x": 288.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8518,7 +8518,7 @@ "id": "289", "seqid": 96, "position": { - "x": 191.000000, + "x": 286.500000, "y": -0.000000 }, "alias": "P", @@ -8529,7 +8529,7 @@ "id": "290", "seqid": 98, "position": { - "x": 194.000000, + "x": 291.000000, "y": -0.000000 }, "alias": "dR", @@ -8540,8 +8540,8 @@ "id": "291", "seqid": 98, "position": { - "x": 194.000000, - "y": -1.000000 + "x": 291.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8551,7 +8551,7 @@ "id": "292", "seqid": 97, "position": { - "x": 193.000000, + "x": 289.500000, "y": -0.000000 }, "alias": "P", @@ -8562,7 +8562,7 @@ "id": "293", "seqid": 99, "position": { - "x": 196.000000, + "x": 294.000000, "y": -0.000000 }, "alias": "dR", @@ -8573,8 +8573,8 @@ "id": "294", "seqid": 99, "position": { - "x": 196.000000, - "y": -1.000000 + "x": 294.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8584,7 +8584,7 @@ "id": "295", "seqid": 98, "position": { - "x": 195.000000, + "x": 292.500000, "y": -0.000000 }, "alias": "P", @@ -8595,7 +8595,7 @@ "id": "296", "seqid": 100, "position": { - "x": 198.000000, + "x": 297.000000, "y": -0.000000 }, "alias": "dR", @@ -8606,8 +8606,8 @@ "id": "297", "seqid": 100, "position": { - "x": 198.000000, - "y": -1.000000 + "x": 297.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8617,7 +8617,7 @@ "id": "298", "seqid": 99, "position": { - "x": 197.000000, + "x": 295.500000, "y": -0.000000 }, "alias": "P", @@ -8628,7 +8628,7 @@ "id": "299", "seqid": 101, "position": { - "x": 200.000000, + "x": 300.000000, "y": -0.000000 }, "alias": "dR", @@ -8639,8 +8639,8 @@ "id": "300", "seqid": 101, "position": { - "x": 200.000000, - "y": -1.000000 + "x": 300.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8650,7 +8650,7 @@ "id": "301", "seqid": 100, "position": { - "x": 199.000000, + "x": 298.500000, "y": -0.000000 }, "alias": "P", @@ -8661,7 +8661,7 @@ "id": "302", "seqid": 102, "position": { - "x": 202.000000, + "x": 303.000000, "y": -0.000000 }, "alias": "dR", @@ -8672,8 +8672,8 @@ "id": "303", "seqid": 102, "position": { - "x": 202.000000, - "y": -1.000000 + "x": 303.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8683,7 +8683,7 @@ "id": "304", "seqid": 101, "position": { - "x": 201.000000, + "x": 301.500000, "y": -0.000000 }, "alias": "P", @@ -8694,7 +8694,7 @@ "id": "305", "seqid": 103, "position": { - "x": 204.000000, + "x": 306.000000, "y": -0.000000 }, "alias": "dR", @@ -8705,8 +8705,8 @@ "id": "306", "seqid": 103, "position": { - "x": 204.000000, - "y": -1.000000 + "x": 306.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8716,7 +8716,7 @@ "id": "307", "seqid": 102, "position": { - "x": 203.000000, + "x": 304.500000, "y": -0.000000 }, "alias": "P", @@ -8727,7 +8727,7 @@ "id": "308", "seqid": 104, "position": { - "x": 206.000000, + "x": 309.000000, "y": -0.000000 }, "alias": "dR", @@ -8738,8 +8738,8 @@ "id": "309", "seqid": 104, "position": { - "x": 206.000000, - "y": -1.000000 + "x": 309.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8749,7 +8749,7 @@ "id": "310", "seqid": 103, "position": { - "x": 205.000000, + "x": 307.500000, "y": -0.000000 }, "alias": "P", @@ -8760,7 +8760,7 @@ "id": "311", "seqid": 105, "position": { - "x": 208.000000, + "x": 312.000000, "y": -0.000000 }, "alias": "dR", @@ -8771,8 +8771,8 @@ "id": "312", "seqid": 105, "position": { - "x": 208.000000, - "y": -1.000000 + "x": 312.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8782,7 +8782,7 @@ "id": "313", "seqid": 104, "position": { - "x": 207.000000, + "x": 310.500000, "y": -0.000000 }, "alias": "P", @@ -8793,7 +8793,7 @@ "id": "314", "seqid": 106, "position": { - "x": 210.000000, + "x": 315.000000, "y": -0.000000 }, "alias": "dR", @@ -8804,8 +8804,8 @@ "id": "315", "seqid": 106, "position": { - "x": 210.000000, - "y": -1.000000 + "x": 315.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -8815,7 +8815,7 @@ "id": "316", "seqid": 105, "position": { - "x": 209.000000, + "x": 313.500000, "y": -0.000000 }, "alias": "P", @@ -8826,7 +8826,7 @@ "id": "317", "seqid": 107, "position": { - "x": 212.000000, + "x": 318.000000, "y": -0.000000 }, "alias": "dR", @@ -8837,8 +8837,8 @@ "id": "318", "seqid": 107, "position": { - "x": 212.000000, - "y": -1.000000 + "x": 318.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8848,7 +8848,7 @@ "id": "319", "seqid": 106, "position": { - "x": 211.000000, + "x": 316.500000, "y": -0.000000 }, "alias": "P", @@ -8859,7 +8859,7 @@ "id": "320", "seqid": 108, "position": { - "x": 214.000000, + "x": 321.000000, "y": -0.000000 }, "alias": "dR", @@ -8870,8 +8870,8 @@ "id": "321", "seqid": 108, "position": { - "x": 214.000000, - "y": -1.000000 + "x": 321.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8881,7 +8881,7 @@ "id": "322", "seqid": 107, "position": { - "x": 213.000000, + "x": 319.500000, "y": -0.000000 }, "alias": "P", @@ -8892,7 +8892,7 @@ "id": "323", "seqid": 109, "position": { - "x": 216.000000, + "x": 324.000000, "y": -0.000000 }, "alias": "dR", @@ -8903,8 +8903,8 @@ "id": "324", "seqid": 109, "position": { - "x": 216.000000, - "y": -1.000000 + "x": 324.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8914,7 +8914,7 @@ "id": "325", "seqid": 108, "position": { - "x": 215.000000, + "x": 322.500000, "y": -0.000000 }, "alias": "P", @@ -8925,7 +8925,7 @@ "id": "326", "seqid": 110, "position": { - "x": 218.000000, + "x": 327.000000, "y": -0.000000 }, "alias": "dR", @@ -8936,8 +8936,8 @@ "id": "327", "seqid": 110, "position": { - "x": 218.000000, - "y": -1.000000 + "x": 327.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8947,7 +8947,7 @@ "id": "328", "seqid": 109, "position": { - "x": 217.000000, + "x": 325.500000, "y": -0.000000 }, "alias": "P", @@ -8958,7 +8958,7 @@ "id": "329", "seqid": 111, "position": { - "x": 220.000000, + "x": 330.000000, "y": -0.000000 }, "alias": "dR", @@ -8969,8 +8969,8 @@ "id": "330", "seqid": 111, "position": { - "x": 220.000000, - "y": -1.000000 + "x": 330.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8980,7 +8980,7 @@ "id": "331", "seqid": 110, "position": { - "x": 219.000000, + "x": 328.500000, "y": -0.000000 }, "alias": "P", @@ -8991,7 +8991,7 @@ "id": "332", "seqid": 112, "position": { - "x": 222.000000, + "x": 333.000000, "y": -0.000000 }, "alias": "dR", @@ -9002,8 +9002,8 @@ "id": "333", "seqid": 112, "position": { - "x": 222.000000, - "y": -1.000000 + "x": 333.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9013,7 +9013,7 @@ "id": "334", "seqid": 111, "position": { - "x": 221.000000, + "x": 331.500000, "y": -0.000000 }, "alias": "P", @@ -9024,7 +9024,7 @@ "id": "335", "seqid": 113, "position": { - "x": 224.000000, + "x": 336.000000, "y": -0.000000 }, "alias": "dR", @@ -9035,8 +9035,8 @@ "id": "336", "seqid": 113, "position": { - "x": 224.000000, - "y": -1.000000 + "x": 336.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9046,7 +9046,7 @@ "id": "337", "seqid": 112, "position": { - "x": 223.000000, + "x": 334.500000, "y": -0.000000 }, "alias": "P", @@ -9057,7 +9057,7 @@ "id": "338", "seqid": 114, "position": { - "x": 226.000000, + "x": 339.000000, "y": -0.000000 }, "alias": "dR", @@ -9068,8 +9068,8 @@ "id": "339", "seqid": 114, "position": { - "x": 226.000000, - "y": -1.000000 + "x": 339.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9079,7 +9079,7 @@ "id": "340", "seqid": 113, "position": { - "x": 225.000000, + "x": 337.500000, "y": -0.000000 }, "alias": "P", @@ -9090,7 +9090,7 @@ "id": "341", "seqid": 115, "position": { - "x": 228.000000, + "x": 342.000000, "y": -0.000000 }, "alias": "dR", @@ -9101,8 +9101,8 @@ "id": "342", "seqid": 115, "position": { - "x": 228.000000, - "y": -1.000000 + "x": 342.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9112,7 +9112,7 @@ "id": "343", "seqid": 114, "position": { - "x": 227.000000, + "x": 340.500000, "y": -0.000000 }, "alias": "P", @@ -9123,7 +9123,7 @@ "id": "344", "seqid": 116, "position": { - "x": 230.000000, + "x": 345.000000, "y": -0.000000 }, "alias": "dR", @@ -9134,8 +9134,8 @@ "id": "345", "seqid": 116, "position": { - "x": 230.000000, - "y": -1.000000 + "x": 345.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9145,7 +9145,7 @@ "id": "346", "seqid": 115, "position": { - "x": 229.000000, + "x": 343.500000, "y": -0.000000 }, "alias": "P", @@ -9156,7 +9156,7 @@ "id": "347", "seqid": 117, "position": { - "x": 232.000000, + "x": 348.000000, "y": -0.000000 }, "alias": "dR", @@ -9167,8 +9167,8 @@ "id": "348", "seqid": 117, "position": { - "x": 232.000000, - "y": -1.000000 + "x": 348.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9178,7 +9178,7 @@ "id": "349", "seqid": 116, "position": { - "x": 231.000000, + "x": 346.500000, "y": -0.000000 }, "alias": "P", @@ -9189,7 +9189,7 @@ "id": "350", "seqid": 118, "position": { - "x": 234.000000, + "x": 351.000000, "y": -0.000000 }, "alias": "dR", @@ -9200,8 +9200,8 @@ "id": "351", "seqid": 118, "position": { - "x": 234.000000, - "y": -1.000000 + "x": 351.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9211,7 +9211,7 @@ "id": "352", "seqid": 117, "position": { - "x": 233.000000, + "x": 349.500000, "y": -0.000000 }, "alias": "P", @@ -9222,7 +9222,7 @@ "id": "353", "seqid": 119, "position": { - "x": 236.000000, + "x": 354.000000, "y": -0.000000 }, "alias": "dR", @@ -9233,8 +9233,8 @@ "id": "354", "seqid": 119, "position": { - "x": 236.000000, - "y": -1.000000 + "x": 354.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9244,7 +9244,7 @@ "id": "355", "seqid": 118, "position": { - "x": 235.000000, + "x": 352.500000, "y": -0.000000 }, "alias": "P", @@ -9255,7 +9255,7 @@ "id": "356", "seqid": 120, "position": { - "x": 238.000000, + "x": 357.000000, "y": -0.000000 }, "alias": "dR", @@ -9266,8 +9266,8 @@ "id": "357", "seqid": 120, "position": { - "x": 238.000000, - "y": -1.000000 + "x": 357.000000, + "y": -1.500000 }, "alias": "T", "templateId": "T___Thymine" @@ -9277,7 +9277,7 @@ "id": "358", "seqid": 119, "position": { - "x": 237.000000, + "x": 355.500000, "y": -0.000000 }, "alias": "P", @@ -9288,7 +9288,7 @@ "id": "359", "seqid": 121, "position": { - "x": 240.000000, + "x": 360.000000, "y": -0.000000 }, "alias": "dR", @@ -9299,8 +9299,8 @@ "id": "360", "seqid": 121, "position": { - "x": 240.000000, - "y": -1.000000 + "x": 360.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9310,7 +9310,7 @@ "id": "361", "seqid": 120, "position": { - "x": 239.000000, + "x": 358.500000, "y": -0.000000 }, "alias": "P", @@ -9321,7 +9321,7 @@ "id": "362", "seqid": 122, "position": { - "x": 242.000000, + "x": 363.000000, "y": -0.000000 }, "alias": "dR", @@ -9332,8 +9332,8 @@ "id": "363", "seqid": 122, "position": { - "x": 242.000000, - "y": -1.000000 + "x": 363.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9343,7 +9343,7 @@ "id": "364", "seqid": 121, "position": { - "x": 241.000000, + "x": 361.500000, "y": -0.000000 }, "alias": "P", @@ -9354,7 +9354,7 @@ "id": "365", "seqid": 123, "position": { - "x": 244.000000, + "x": 366.000000, "y": -0.000000 }, "alias": "dR", @@ -9365,8 +9365,8 @@ "id": "366", "seqid": 123, "position": { - "x": 244.000000, - "y": -1.000000 + "x": 366.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9376,7 +9376,7 @@ "id": "367", "seqid": 122, "position": { - "x": 243.000000, + "x": 364.500000, "y": -0.000000 }, "alias": "P", @@ -9387,7 +9387,7 @@ "id": "368", "seqid": 124, "position": { - "x": 246.000000, + "x": 369.000000, "y": -0.000000 }, "alias": "dR", @@ -9398,8 +9398,8 @@ "id": "369", "seqid": 124, "position": { - "x": 246.000000, - "y": -1.000000 + "x": 369.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9409,7 +9409,7 @@ "id": "370", "seqid": 123, "position": { - "x": 245.000000, + "x": 367.500000, "y": -0.000000 }, "alias": "P", @@ -9420,7 +9420,7 @@ "id": "371", "seqid": 125, "position": { - "x": 248.000000, + "x": 372.000000, "y": -0.000000 }, "alias": "dR", @@ -9431,8 +9431,8 @@ "id": "372", "seqid": 125, "position": { - "x": 248.000000, - "y": -1.000000 + "x": 372.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9442,7 +9442,7 @@ "id": "373", "seqid": 124, "position": { - "x": 247.000000, + "x": 370.500000, "y": -0.000000 }, "alias": "P", @@ -9453,7 +9453,7 @@ "id": "374", "seqid": 126, "position": { - "x": 250.000000, + "x": 375.000000, "y": -0.000000 }, "alias": "dR", @@ -9464,8 +9464,8 @@ "id": "375", "seqid": 126, "position": { - "x": 250.000000, - "y": -1.000000 + "x": 375.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9475,7 +9475,7 @@ "id": "376", "seqid": 125, "position": { - "x": 249.000000, + "x": 373.500000, "y": -0.000000 }, "alias": "P", @@ -9486,7 +9486,7 @@ "id": "377", "seqid": 127, "position": { - "x": 252.000000, + "x": 378.000000, "y": -0.000000 }, "alias": "dR", @@ -9497,8 +9497,8 @@ "id": "378", "seqid": 127, "position": { - "x": 252.000000, - "y": -1.000000 + "x": 378.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9508,7 +9508,7 @@ "id": "379", "seqid": 126, "position": { - "x": 251.000000, + "x": 376.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/formats/ref/test_peptide.ket b/api/tests/integration/tests/formats/ref/test_peptide.ket index 7479ed983a..0c29e8d8a0 100644 --- a/api/tests/integration/tests/formats/ref/test_peptide.ket +++ b/api/tests/integration/tests/formats/ref/test_peptide.ket @@ -7072,7 +7072,7 @@ "id": "1", "seqid": 2, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "I", @@ -7083,7 +7083,7 @@ "id": "2", "seqid": 3, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "I", @@ -7094,7 +7094,7 @@ "id": "3", "seqid": 4, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "G", @@ -7105,7 +7105,7 @@ "id": "4", "seqid": 5, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "Y", @@ -7116,7 +7116,7 @@ "id": "5", "seqid": 6, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "V", @@ -7127,7 +7127,7 @@ "id": "6", "seqid": 7, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "I", @@ -7138,7 +7138,7 @@ "id": "7", "seqid": 8, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "G", @@ -7149,7 +7149,7 @@ "id": "8", "seqid": 9, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "Q", @@ -7160,7 +7160,7 @@ "id": "9", "seqid": 10, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "A", @@ -7171,7 +7171,7 @@ "id": "10", "seqid": 11, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "T", @@ -7182,7 +7182,7 @@ "id": "11", "seqid": 12, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "T", @@ -7193,7 +7193,7 @@ "id": "12", "seqid": 13, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "Q", @@ -7204,7 +7204,7 @@ "id": "13", "seqid": 14, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "E", @@ -7215,7 +7215,7 @@ "id": "14", "seqid": 15, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "A", @@ -7226,7 +7226,7 @@ "id": "15", "seqid": 16, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "L", @@ -7237,7 +7237,7 @@ "id": "16", "seqid": 17, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "I", @@ -7248,7 +7248,7 @@ "id": "17", "seqid": 18, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "L", @@ -7259,7 +7259,7 @@ "id": "18", "seqid": 19, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "A", @@ -7270,7 +7270,7 @@ "id": "19", "seqid": 20, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "E", @@ -7281,7 +7281,7 @@ "id": "20", "seqid": 21, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "R", @@ -7292,7 +7292,7 @@ "id": "21", "seqid": 22, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "P", @@ -7303,7 +7303,7 @@ "id": "22", "seqid": 23, "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "alias": "V", @@ -7314,7 +7314,7 @@ "id": "23", "seqid": 24, "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "alias": "R", @@ -7325,7 +7325,7 @@ "id": "24", "seqid": 25, "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "alias": "L", @@ -7336,7 +7336,7 @@ "id": "25", "seqid": 26, "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "alias": "G", @@ -7347,7 +7347,7 @@ "id": "26", "seqid": 27, "position": { - "x": 26.000000, + "x": 39.000000, "y": -0.000000 }, "alias": "T", @@ -7358,7 +7358,7 @@ "id": "27", "seqid": 28, "position": { - "x": 27.000000, + "x": 40.500000, "y": -0.000000 }, "alias": "Y", @@ -7369,7 +7369,7 @@ "id": "28", "seqid": 29, "position": { - "x": 28.000000, + "x": 42.000000, "y": -0.000000 }, "alias": "V", @@ -7380,7 +7380,7 @@ "id": "29", "seqid": 30, "position": { - "x": 29.000000, + "x": 43.500000, "y": -0.000000 }, "alias": "V", @@ -7391,7 +7391,7 @@ "id": "30", "seqid": 31, "position": { - "x": 30.000000, + "x": 45.000000, "y": -0.000000 }, "alias": "L", @@ -7402,7 +7402,7 @@ "id": "31", "seqid": 32, "position": { - "x": 31.000000, + "x": 46.500000, "y": -0.000000 }, "alias": "E", @@ -7413,7 +7413,7 @@ "id": "32", "seqid": 33, "position": { - "x": 32.000000, + "x": 48.000000, "y": -0.000000 }, "alias": "Y", @@ -7424,7 +7424,7 @@ "id": "33", "seqid": 34, "position": { - "x": 33.000000, + "x": 49.500000, "y": -0.000000 }, "alias": "D", @@ -7435,7 +7435,7 @@ "id": "34", "seqid": 35, "position": { - "x": 34.000000, + "x": 51.000000, "y": -0.000000 }, "alias": "N", @@ -7446,7 +7446,7 @@ "id": "35", "seqid": 36, "position": { - "x": 35.000000, + "x": 52.500000, "y": -0.000000 }, "alias": "V", @@ -7457,7 +7457,7 @@ "id": "36", "seqid": 37, "position": { - "x": 36.000000, + "x": 54.000000, "y": -0.000000 }, "alias": "K", @@ -7468,7 +7468,7 @@ "id": "37", "seqid": 38, "position": { - "x": 37.000000, + "x": 55.500000, "y": -0.000000 }, "alias": "A", @@ -7479,7 +7479,7 @@ "id": "38", "seqid": 39, "position": { - "x": 38.000000, + "x": 57.000000, "y": -0.000000 }, "alias": "L", @@ -7490,7 +7490,7 @@ "id": "39", "seqid": 40, "position": { - "x": 39.000000, + "x": 58.500000, "y": -0.000000 }, "alias": "G", @@ -7501,7 +7501,7 @@ "id": "40", "seqid": 41, "position": { - "x": 40.000000, + "x": 60.000000, "y": -0.000000 }, "alias": "L", @@ -7512,7 +7512,7 @@ "id": "41", "seqid": 42, "position": { - "x": 41.000000, + "x": 61.500000, "y": -0.000000 }, "alias": "I", @@ -7523,7 +7523,7 @@ "id": "42", "seqid": 43, "position": { - "x": 42.000000, + "x": 63.000000, "y": -0.000000 }, "alias": "T", @@ -7534,7 +7534,7 @@ "id": "43", "seqid": 44, "position": { - "x": 43.000000, + "x": 64.500000, "y": -0.000000 }, "alias": "N", @@ -7545,7 +7545,7 @@ "id": "44", "seqid": 45, "position": { - "x": 44.000000, + "x": 66.000000, "y": -0.000000 }, "alias": "V", @@ -7556,7 +7556,7 @@ "id": "45", "seqid": 46, "position": { - "x": 45.000000, + "x": 67.500000, "y": -0.000000 }, "alias": "T", @@ -7567,7 +7567,7 @@ "id": "46", "seqid": 47, "position": { - "x": 46.000000, + "x": 69.000000, "y": -0.000000 }, "alias": "R", @@ -7578,7 +7578,7 @@ "id": "47", "seqid": 48, "position": { - "x": 47.000000, + "x": 70.500000, "y": -0.000000 }, "alias": "G", @@ -7589,7 +7589,7 @@ "id": "48", "seqid": 49, "position": { - "x": 48.000000, + "x": 72.000000, "y": -0.000000 }, "alias": "S", @@ -7600,7 +7600,7 @@ "id": "49", "seqid": 50, "position": { - "x": 49.000000, + "x": 73.500000, "y": -0.000000 }, "alias": "P", @@ -7611,7 +7611,7 @@ "id": "50", "seqid": 51, "position": { - "x": 50.000000, + "x": 75.000000, "y": -0.000000 }, "alias": "L", @@ -7622,7 +7622,7 @@ "id": "51", "seqid": 52, "position": { - "x": 51.000000, + "x": 76.500000, "y": -0.000000 }, "alias": "L", @@ -7633,7 +7633,7 @@ "id": "52", "seqid": 53, "position": { - "x": 52.000000, + "x": 78.000000, "y": -0.000000 }, "alias": "D", @@ -7644,7 +7644,7 @@ "id": "53", "seqid": 54, "position": { - "x": 53.000000, + "x": 79.500000, "y": -0.000000 }, "alias": "D", @@ -7655,7 +7655,7 @@ "id": "54", "seqid": 55, "position": { - "x": 54.000000, + "x": 81.000000, "y": -0.000000 }, "alias": "N", @@ -7666,7 +7666,7 @@ "id": "55", "seqid": 56, "position": { - "x": 55.000000, + "x": 82.500000, "y": -0.000000 }, "alias": "M", @@ -7677,7 +7677,7 @@ "id": "56", "seqid": 57, "position": { - "x": 56.000000, + "x": 84.000000, "y": -0.000000 }, "alias": "N", @@ -7688,7 +7688,7 @@ "id": "57", "seqid": 58, "position": { - "x": 57.000000, + "x": 85.500000, "y": -0.000000 }, "alias": "D", @@ -7699,7 +7699,7 @@ "id": "58", "seqid": 59, "position": { - "x": 58.000000, + "x": 87.000000, "y": -0.000000 }, "alias": "I", @@ -7710,7 +7710,7 @@ "id": "59", "seqid": 60, "position": { - "x": 59.000000, + "x": 88.500000, "y": -0.000000 }, "alias": "E", @@ -7721,7 +7721,7 @@ "id": "60", "seqid": 61, "position": { - "x": 60.000000, + "x": 90.000000, "y": -0.000000 }, "alias": "I", @@ -7732,7 +7732,7 @@ "id": "61", "seqid": 62, "position": { - "x": 61.000000, + "x": 91.500000, "y": -0.000000 }, "alias": "V", @@ -7743,7 +7743,7 @@ "id": "62", "seqid": 63, "position": { - "x": 62.000000, + "x": 93.000000, "y": -0.000000 }, "alias": "Q", @@ -7754,7 +7754,7 @@ "id": "63", "seqid": 64, "position": { - "x": 63.000000, + "x": 94.500000, "y": -0.000000 }, "alias": "R", @@ -7765,7 +7765,7 @@ "id": "64", "seqid": 65, "position": { - "x": 64.000000, + "x": 96.000000, "y": -0.000000 }, "alias": "L", @@ -7776,7 +7776,7 @@ "id": "65", "seqid": 66, "position": { - "x": 65.000000, + "x": 97.500000, "y": -0.000000 }, "alias": "K", @@ -7787,7 +7787,7 @@ "id": "66", "seqid": 67, "position": { - "x": 66.000000, + "x": 99.000000, "y": -0.000000 }, "alias": "Q", @@ -7798,7 +7798,7 @@ "id": "67", "seqid": 68, "position": { - "x": 67.000000, + "x": 100.500000, "y": -0.000000 }, "alias": "F", @@ -7809,7 +7809,7 @@ "id": "68", "seqid": 69, "position": { - "x": 68.000000, + "x": 102.000000, "y": -0.000000 }, "alias": "N", @@ -7820,7 +7820,7 @@ "id": "69", "seqid": 70, "position": { - "x": 69.000000, + "x": 103.500000, "y": -0.000000 }, 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"x": 413.000000, + "x": 619.500000, "y": -0.000000 }, "alias": "I", @@ -11615,7 +11615,7 @@ "id": "414", "seqid": 415, "position": { - "x": 414.000000, + "x": 621.000000, "y": -0.000000 }, "alias": "E", @@ -11626,7 +11626,7 @@ "id": "415", "seqid": 416, "position": { - "x": 415.000000, + "x": 622.500000, "y": -0.000000 }, "alias": "P", @@ -11637,7 +11637,7 @@ "id": "416", "seqid": 417, "position": { - "x": 416.000000, + "x": 624.000000, "y": -0.000000 }, "alias": "T", @@ -11648,7 +11648,7 @@ "id": "417", "seqid": 418, "position": { - "x": 417.000000, + "x": 625.500000, "y": -0.000000 }, "alias": "D", @@ -11659,7 +11659,7 @@ "id": "418", "seqid": 419, "position": { - "x": 418.000000, + "x": 627.000000, "y": -0.000000 }, "alias": "K", @@ -11670,7 +11670,7 @@ "id": "419", "seqid": 420, "position": { - "x": 419.000000, + "x": 628.500000, "y": -0.000000 }, "alias": "K", @@ -11681,7 +11681,7 @@ "id": "420", "seqid": 421, "position": { - "x": 420.000000, + "x": 630.000000, "y": -0.000000 }, "alias": "Y", @@ -11692,7 +11692,7 @@ "id": "421", "seqid": 422, "position": { - "x": 421.000000, + "x": 631.500000, "y": -0.000000 }, "alias": "I", @@ -11703,7 +11703,7 @@ "id": "422", "seqid": 423, "position": { - "x": 422.000000, + "x": 633.000000, "y": -0.000000 }, "alias": "L", @@ -11714,7 +11714,7 @@ "id": "423", "seqid": 424, "position": { - "x": 423.000000, + "x": 634.500000, "y": -0.000000 }, "alias": "E", @@ -11725,7 +11725,7 @@ "id": "424", "seqid": 425, "position": { - "x": 424.000000, + "x": 636.000000, "y": -0.000000 }, "alias": "S", @@ -11736,7 +11736,7 @@ "id": "425", "seqid": 426, "position": { - "x": 425.000000, + "x": 637.500000, "y": -0.000000 }, "alias": "S", @@ -11747,7 +11747,7 @@ "id": "426", "seqid": 427, "position": { - "x": 426.000000, + "x": 639.000000, "y": -0.000000 }, "alias": "D", @@ -11758,7 +11758,7 @@ "id": "427", "seqid": 428, "position": { - "x": 427.000000, + "x": 640.500000, "y": -0.000000 }, "alias": "N", @@ -11769,7 +11769,7 @@ "id": "428", "seqid": 429, "position": { - "x": 428.000000, + "x": 642.000000, "y": -0.000000 }, "alias": "L", @@ -11780,7 +11780,7 @@ "id": "429", "seqid": 430, "position": { - "x": 429.000000, + "x": 643.500000, "y": -0.000000 }, "alias": "S", @@ -11791,7 +11791,7 @@ "id": "430", "seqid": 431, "position": { - "x": 430.000000, + "x": 645.000000, "y": -0.000000 }, "alias": "E", @@ -11802,7 +11802,7 @@ "id": "431", "seqid": 432, "position": { - "x": 431.000000, + "x": 646.500000, "y": -0.000000 }, "alias": "D", @@ -11813,7 +11813,7 @@ "id": "432", "seqid": 433, "position": { - "x": 432.000000, + "x": 648.000000, "y": -0.000000 }, "alias": "L", @@ -11824,7 +11824,7 @@ "id": "433", "seqid": 434, "position": { - "x": 433.000000, + "x": 649.500000, "y": -0.000000 }, "alias": "A", @@ -11835,7 +11835,7 @@ "id": "434", "seqid": 435, "position": { - "x": 434.000000, + "x": 651.000000, "y": -0.000000 }, "alias": "E", @@ -11846,7 +11846,7 @@ "id": "435", "seqid": 436, "position": { - "x": 435.000000, + "x": 652.500000, "y": -0.000000 }, "alias": "Q", @@ -11857,7 +11857,7 @@ "id": "436", "seqid": 437, "position": { - "x": 436.000000, + "x": 654.000000, "y": -0.000000 }, "alias": "L", @@ -11868,7 +11868,7 @@ "id": "437", "seqid": 438, "position": { - "x": 437.000000, + "x": 655.500000, "y": -0.000000 }, "alias": "S", @@ -11879,7 +11879,7 @@ "id": "438", "seqid": 439, "position": { - "x": 438.000000, + "x": 657.000000, "y": -0.000000 }, "alias": "S", @@ -11890,7 +11890,7 @@ "id": "439", "seqid": 440, "position": { - "x": 439.000000, + "x": 658.500000, "y": -0.000000 }, "alias": "L", @@ -11901,7 +11901,7 @@ "id": "440", "seqid": 441, "position": { - "x": 440.000000, + "x": 660.000000, "y": -0.000000 }, "alias": "D", @@ -11912,7 +11912,7 @@ "id": "441", "seqid": 442, "position": { - "x": 441.000000, + "x": 661.500000, "y": -0.000000 }, "alias": "V", @@ -11923,7 +11923,7 @@ "id": "442", "seqid": 443, "position": { - "x": 442.000000, + "x": 663.000000, "y": -0.000000 }, "alias": "G", @@ -11934,7 +11934,7 @@ "id": "443", "seqid": 444, "position": { - "x": 443.000000, + "x": 664.500000, "y": -0.000000 }, "alias": "E", @@ -11945,7 +11945,7 @@ "id": "444", "seqid": 445, "position": { - "x": 444.000000, + "x": 666.000000, "y": -0.000000 }, "alias": "A", @@ -11956,7 +11956,7 @@ "id": "445", "seqid": 446, "position": { - "x": 445.000000, + "x": 667.500000, "y": -0.000000 }, "alias": "I", @@ -11967,7 +11967,7 @@ "id": "446", "seqid": 447, "position": { - "x": 446.000000, + "x": 669.000000, "y": -0.000000 }, "alias": "I", @@ -11978,7 +11978,7 @@ "id": "447", "seqid": 448, "position": { - "x": 447.000000, + "x": 670.500000, "y": -0.000000 }, "alias": "I", @@ -11989,7 +11989,7 @@ "id": "448", "seqid": 449, "position": { - "x": 448.000000, + "x": 672.000000, "y": -0.000000 }, "alias": "G", @@ -12000,7 +12000,7 @@ "id": "449", "seqid": 450, "position": { - "x": 449.000000, + "x": 673.500000, "y": -0.000000 }, "alias": "K", @@ -12011,7 +12011,7 @@ "id": "450", "seqid": 451, "position": { - "x": 450.000000, + "x": 675.000000, "y": -0.000000 }, "alias": "I", @@ -12022,7 +12022,7 @@ "id": "451", "seqid": 452, "position": { - "x": 451.000000, + "x": 676.500000, "y": -0.000000 }, "alias": "V", @@ -12033,7 +12033,7 @@ "id": "452", "seqid": 453, "position": { - "x": 452.000000, + "x": 678.000000, "y": -0.000000 }, "alias": "K", @@ -12044,7 +12044,7 @@ "id": "453", "seqid": 454, "position": { - "x": 453.000000, + "x": 679.500000, "y": -0.000000 }, "alias": "L", @@ -12055,7 +12055,7 @@ "id": "454", "seqid": 455, "position": { - "x": 454.000000, + "x": 681.000000, "y": -0.000000 }, "alias": "P", @@ -12066,7 +12066,7 @@ "id": "455", "seqid": 456, "position": { - "x": 455.000000, + "x": 682.500000, "y": -0.000000 }, "alias": "A", @@ -12077,7 +12077,7 @@ "id": "456", "seqid": 457, "position": { - "x": 456.000000, + "x": 684.000000, "y": -0.000000 }, "alias": "V", @@ -12088,7 +12088,7 @@ "id": "457", "seqid": 458, "position": { - "x": 457.000000, + "x": 685.500000, "y": -0.000000 }, "alias": "V", @@ -12099,7 +12099,7 @@ "id": "458", "seqid": 459, "position": { - "x": 458.000000, + "x": 687.000000, "y": -0.000000 }, "alias": "K", @@ -12110,7 +12110,7 @@ "id": "459", "seqid": 460, "position": { - "x": 459.000000, + "x": 688.500000, "y": -0.000000 }, "alias": "I", @@ -12121,7 +12121,7 @@ "id": "460", "seqid": 461, "position": { - "x": 460.000000, + "x": 690.000000, "y": -0.000000 }, "alias": "D", @@ -12132,7 +12132,7 @@ "id": "461", "seqid": 462, "position": { - "x": 461.000000, + "x": 691.500000, "y": -0.000000 }, "alias": "M", @@ -12143,7 +12143,7 @@ "id": "462", "seqid": 463, "position": { - "x": 462.000000, + "x": 693.000000, "y": -0.000000 }, "alias": "F", @@ -12154,7 +12154,7 @@ "id": "463", "seqid": 464, "position": { - "x": 463.000000, + "x": 694.500000, "y": -0.000000 }, "alias": "E", @@ -12165,7 +12165,7 @@ "id": "464", "seqid": 465, "position": { - "x": 464.000000, + "x": 696.000000, "y": -0.000000 }, "alias": "G", @@ -12176,7 +12176,7 @@ "id": "465", "seqid": 466, "position": { - "x": 465.000000, + "x": 697.500000, "y": -0.000000 }, "alias": "K", @@ -12187,7 +12187,7 @@ "id": "466", "seqid": 467, "position": { - "x": 466.000000, + "x": 699.000000, "y": -0.000000 }, "alias": "L", @@ -12198,7 +12198,7 @@ "id": "467", "seqid": 468, "position": { - "x": 467.000000, + "x": 700.500000, "y": -0.000000 }, "alias": "L", @@ -12209,7 +12209,7 @@ "id": "468", "seqid": 469, "position": { - "x": 468.000000, + "x": 702.000000, "y": -0.000000 }, "alias": "G", @@ -12220,7 +12220,7 @@ "id": "469", "seqid": 470, "position": { - "x": 469.000000, + "x": 703.500000, "y": -0.000000 }, "alias": "S", @@ -12231,7 +12231,7 @@ "id": "470", "seqid": 471, "position": { - "x": 470.000000, + "x": 705.000000, "y": -0.000000 }, "alias": "D", @@ -12242,7 +12242,7 @@ "id": "471", "seqid": 472, "position": { - "x": 471.000000, + "x": 706.500000, "y": -0.000000 }, "alias": "P", @@ -12253,7 +12253,7 @@ "id": "472", "seqid": 473, "position": { - "x": 472.000000, + "x": 708.000000, "y": -0.000000 }, "alias": "D", @@ -12264,7 +12264,7 @@ "id": "473", "seqid": 474, "position": { - "x": 473.000000, + "x": 709.500000, "y": -0.000000 }, "alias": "M", @@ -12275,7 +12275,7 @@ "id": "474", "seqid": 475, "position": { - "x": 474.000000, + "x": 711.000000, "y": -0.000000 }, "alias": "I", @@ -12286,7 +12286,7 @@ "id": "475", "seqid": 476, "position": { - "x": 475.000000, + "x": 712.500000, "y": -0.000000 }, "alias": "G", @@ -12297,7 +12297,7 @@ "id": "476", "seqid": 477, "position": { - "x": 476.000000, + "x": 714.000000, "y": -0.000000 }, "alias": "E", @@ -12308,7 +12308,7 @@ "id": "477", "seqid": 478, "position": { - "x": 477.000000, + "x": 715.500000, "y": -0.000000 }, "alias": "W", @@ -12319,7 +12319,7 @@ "id": "478", "seqid": 479, "position": { - "x": 478.000000, + "x": 717.000000, "y": -0.000000 }, "alias": "K", @@ -12330,7 +12330,7 @@ "id": "479", "seqid": 480, "position": { - "x": 479.000000, + "x": 718.500000, "y": -0.000000 }, "alias": "K", @@ -12341,7 +12341,7 @@ "id": "480", "seqid": 481, "position": { - "x": 480.000000, + "x": 720.000000, "y": -0.000000 }, "alias": "V", @@ -12352,7 +12352,7 @@ "id": "481", "seqid": 482, "position": { - "x": 481.000000, + "x": 721.500000, "y": -0.000000 }, "alias": "A", @@ -12363,7 +12363,7 @@ "id": "482", "seqid": 483, "position": { - "x": 482.000000, + "x": 723.000000, "y": -0.000000 }, "alias": "A", @@ -12374,7 +12374,7 @@ "id": "483", "seqid": 484, "position": { - "x": 483.000000, + "x": 724.500000, "y": -0.000000 }, "alias": "S", @@ -12385,7 +12385,7 @@ "id": "484", "seqid": 485, "position": { - "x": 484.000000, + "x": 726.000000, "y": -0.000000 }, "alias": "E", @@ -12396,7 +12396,7 @@ "id": "485", "seqid": 486, "position": { - "x": 485.000000, + "x": 727.500000, "y": -0.000000 }, "alias": "K", @@ -12407,7 +12407,7 @@ "id": "486", "seqid": 487, "position": { - "x": 486.000000, + "x": 729.000000, "y": -0.000000 }, "alias": "I", @@ -12418,7 +12418,7 @@ "id": "487", "seqid": 488, "position": { - "x": 487.000000, + "x": 730.500000, "y": -0.000000 }, "alias": "A", @@ -12429,7 +12429,7 @@ "id": "488", "seqid": 489, "position": { - "x": 488.000000, + "x": 732.000000, "y": -0.000000 }, "alias": "K", @@ -12440,7 +12440,7 @@ "id": "489", "seqid": 490, "position": { - "x": 489.000000, + "x": 733.500000, "y": -0.000000 }, "alias": "G", @@ -12451,7 +12451,7 @@ "id": "490", "seqid": 491, "position": { - "x": 490.000000, + "x": 735.000000, "y": -0.000000 }, "alias": "F", @@ -12462,7 +12462,7 @@ "id": "491", "seqid": 492, "position": { - "x": 491.000000, + "x": 736.500000, "y": -0.000000 }, "alias": "A", @@ -12473,7 +12473,7 @@ "id": "492", "seqid": 493, "position": { - "x": 492.000000, + "x": 738.000000, "y": -0.000000 }, "alias": "D", @@ -12484,7 +12484,7 @@ "id": "493", "seqid": 494, "position": { - "x": 493.000000, + "x": 739.500000, "y": -0.000000 }, "alias": "F", @@ -12495,7 +12495,7 @@ "id": "494", "seqid": 495, "position": { - "x": 494.000000, + "x": 741.000000, "y": -0.000000 }, "alias": "G", @@ -12506,7 +12506,7 @@ "id": "495", "seqid": 496, "position": { - "x": 495.000000, + "x": 742.500000, "y": -0.000000 }, "alias": "T", @@ -12517,7 +12517,7 @@ "id": "496", "seqid": 497, "position": { - "x": 496.000000, + "x": 744.000000, "y": -0.000000 }, "alias": "E", @@ -12528,7 +12528,7 @@ "id": "497", "seqid": 498, "position": { - "x": 497.000000, + "x": 745.500000, "y": -0.000000 }, "alias": "I", @@ -12539,7 +12539,7 @@ "id": "498", "seqid": 499, "position": { - "x": 498.000000, + "x": 747.000000, "y": -0.000000 }, "alias": "G", @@ -12550,7 +12550,7 @@ "id": "499", "seqid": 500, "position": { - "x": 499.000000, + "x": 748.500000, "y": -0.000000 }, "alias": "D", diff --git a/api/tests/integration/tests/formats/ref/test_rna.ket b/api/tests/integration/tests/formats/ref/test_rna.ket index b074b11dac..e7007b85a5 100644 --- a/api/tests/integration/tests/formats/ref/test_rna.ket +++ b/api/tests/integration/tests/formats/ref/test_rna.ket @@ -5351,7 +5351,7 @@ "seqid": 1, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5361,7 +5361,7 @@ "id": "2", "seqid": 2, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "R", @@ -5372,8 +5372,8 @@ "id": "3", "seqid": 2, "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5383,7 +5383,7 @@ "id": "4", "seqid": 1, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -5394,7 +5394,7 @@ "id": "5", "seqid": 3, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "R", @@ -5405,8 +5405,8 @@ "id": "6", "seqid": 3, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5416,7 +5416,7 @@ "id": "7", "seqid": 2, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -5427,7 +5427,7 @@ "id": "8", "seqid": 4, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "R", @@ -5438,8 +5438,8 @@ "id": "9", "seqid": 4, "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5449,7 +5449,7 @@ "id": "10", "seqid": 3, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -5460,7 +5460,7 @@ "id": "11", "seqid": 5, "position": { - "x": 8.000000, + "x": 12.000000, "y": -0.000000 }, "alias": "R", @@ -5471,8 +5471,8 @@ "id": "12", "seqid": 5, "position": { - "x": 8.000000, - "y": -1.000000 + "x": 12.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5482,7 +5482,7 @@ "id": "13", "seqid": 4, "position": { - "x": 7.000000, + "x": 10.500000, "y": -0.000000 }, "alias": "P", @@ -5493,7 +5493,7 @@ "id": "14", "seqid": 6, "position": { - "x": 10.000000, + "x": 15.000000, "y": -0.000000 }, "alias": "R", @@ -5504,8 +5504,8 @@ "id": "15", "seqid": 6, "position": { - "x": 10.000000, - "y": -1.000000 + "x": 15.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5515,7 +5515,7 @@ "id": "16", "seqid": 5, "position": { - "x": 9.000000, + "x": 13.500000, "y": -0.000000 }, "alias": "P", @@ -5526,7 +5526,7 @@ "id": "17", "seqid": 7, "position": { - "x": 12.000000, + "x": 18.000000, "y": -0.000000 }, "alias": "R", @@ -5537,8 +5537,8 @@ "id": "18", "seqid": 7, "position": { - "x": 12.000000, - "y": -1.000000 + "x": 18.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5548,7 +5548,7 @@ "id": "19", "seqid": 6, "position": { - "x": 11.000000, + "x": 16.500000, "y": -0.000000 }, "alias": "P", @@ -5559,7 +5559,7 @@ "id": "20", "seqid": 8, "position": { - "x": 14.000000, + "x": 21.000000, "y": -0.000000 }, "alias": "R", @@ -5570,8 +5570,8 @@ "id": "21", "seqid": 8, "position": { - "x": 14.000000, - "y": -1.000000 + "x": 21.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5581,7 +5581,7 @@ "id": "22", "seqid": 7, "position": { - "x": 13.000000, + "x": 19.500000, "y": -0.000000 }, "alias": "P", @@ -5592,7 +5592,7 @@ "id": "23", "seqid": 9, "position": { - "x": 16.000000, + "x": 24.000000, "y": -0.000000 }, "alias": "R", @@ -5603,8 +5603,8 @@ "id": "24", "seqid": 9, "position": { - "x": 16.000000, - "y": -1.000000 + "x": 24.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5614,7 +5614,7 @@ "id": "25", "seqid": 8, "position": { - "x": 15.000000, + "x": 22.500000, "y": -0.000000 }, "alias": "P", @@ -5625,7 +5625,7 @@ "id": "26", "seqid": 10, "position": { - "x": 18.000000, + "x": 27.000000, "y": -0.000000 }, "alias": "R", @@ -5636,8 +5636,8 @@ "id": "27", "seqid": 10, "position": { - "x": 18.000000, - "y": -1.000000 + "x": 27.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5647,7 +5647,7 @@ "id": "28", "seqid": 9, "position": { - "x": 17.000000, + "x": 25.500000, "y": -0.000000 }, "alias": "P", @@ -5658,7 +5658,7 @@ "id": "29", "seqid": 11, "position": { - "x": 20.000000, + "x": 30.000000, "y": -0.000000 }, "alias": "R", @@ -5669,8 +5669,8 @@ "id": "30", "seqid": 11, "position": { - "x": 20.000000, - "y": -1.000000 + "x": 30.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5680,7 +5680,7 @@ "id": "31", "seqid": 10, "position": { - "x": 19.000000, + "x": 28.500000, "y": -0.000000 }, "alias": "P", @@ -5691,7 +5691,7 @@ "id": "32", "seqid": 12, "position": { - "x": 22.000000, + "x": 33.000000, "y": -0.000000 }, "alias": "R", @@ -5702,8 +5702,8 @@ "id": "33", "seqid": 12, "position": { - "x": 22.000000, - "y": -1.000000 + "x": 33.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5713,7 +5713,7 @@ "id": "34", "seqid": 11, "position": { - "x": 21.000000, + "x": 31.500000, "y": -0.000000 }, "alias": "P", @@ -5724,7 +5724,7 @@ "id": "35", "seqid": 13, "position": { - "x": 24.000000, + "x": 36.000000, "y": -0.000000 }, "alias": "R", @@ -5735,8 +5735,8 @@ "id": "36", "seqid": 13, "position": { - "x": 24.000000, - "y": -1.000000 + "x": 36.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5746,7 +5746,7 @@ "id": "37", "seqid": 12, "position": { - "x": 23.000000, + "x": 34.500000, "y": -0.000000 }, "alias": "P", @@ -5757,7 +5757,7 @@ "id": "38", "seqid": 14, "position": { - "x": 26.000000, + "x": 39.000000, "y": -0.000000 }, "alias": "R", @@ -5768,8 +5768,8 @@ "id": "39", "seqid": 14, "position": { - "x": 26.000000, - "y": -1.000000 + "x": 39.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5779,7 +5779,7 @@ "id": "40", "seqid": 13, "position": { - "x": 25.000000, + "x": 37.500000, "y": -0.000000 }, "alias": "P", @@ -5790,7 +5790,7 @@ "id": "41", "seqid": 15, "position": { - "x": 28.000000, + "x": 42.000000, "y": -0.000000 }, "alias": "R", @@ -5801,8 +5801,8 @@ "id": "42", "seqid": 15, "position": { - "x": 28.000000, - "y": -1.000000 + "x": 42.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5812,7 +5812,7 @@ "id": "43", "seqid": 14, "position": { - "x": 27.000000, + "x": 40.500000, "y": -0.000000 }, "alias": "P", @@ -5823,7 +5823,7 @@ "id": "44", "seqid": 16, "position": { - "x": 30.000000, + "x": 45.000000, "y": -0.000000 }, "alias": "R", @@ -5834,8 +5834,8 @@ "id": "45", "seqid": 16, "position": { - "x": 30.000000, - "y": -1.000000 + "x": 45.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5845,7 +5845,7 @@ "id": "46", "seqid": 15, "position": { - "x": 29.000000, + "x": 43.500000, "y": -0.000000 }, "alias": "P", @@ -5856,7 +5856,7 @@ "id": "47", "seqid": 17, "position": { - "x": 32.000000, + "x": 48.000000, "y": -0.000000 }, "alias": "R", @@ -5867,8 +5867,8 @@ "id": "48", "seqid": 17, "position": { - "x": 32.000000, - "y": -1.000000 + "x": 48.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -5878,7 +5878,7 @@ "id": "49", "seqid": 16, "position": { - "x": 31.000000, + "x": 46.500000, "y": -0.000000 }, "alias": "P", @@ -5889,7 +5889,7 @@ "id": "50", "seqid": 18, "position": { - "x": 34.000000, + "x": 51.000000, "y": -0.000000 }, "alias": "R", @@ -5900,8 +5900,8 @@ "id": "51", "seqid": 18, "position": { - "x": 34.000000, - "y": -1.000000 + "x": 51.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -5911,7 +5911,7 @@ "id": "52", "seqid": 17, "position": { - "x": 33.000000, + "x": 49.500000, "y": -0.000000 }, "alias": "P", @@ -5922,7 +5922,7 @@ "id": "53", "seqid": 19, "position": { - "x": 36.000000, + "x": 54.000000, "y": -0.000000 }, "alias": "R", @@ -5933,8 +5933,8 @@ "id": "54", "seqid": 19, "position": { - "x": 36.000000, - "y": -1.000000 + "x": 54.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -5944,7 +5944,7 @@ "id": "55", "seqid": 18, "position": { - "x": 35.000000, + "x": 52.500000, "y": -0.000000 }, "alias": "P", @@ -5955,7 +5955,7 @@ "id": "56", "seqid": 20, "position": { - "x": 38.000000, + "x": 57.000000, "y": -0.000000 }, "alias": "R", @@ -5966,8 +5966,8 @@ "id": "57", "seqid": 20, "position": { - "x": 38.000000, - "y": -1.000000 + "x": 57.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -5977,7 +5977,7 @@ "id": "58", "seqid": 19, "position": { - "x": 37.000000, + "x": 55.500000, "y": -0.000000 }, "alias": "P", @@ -5988,7 +5988,7 @@ "id": "59", "seqid": 21, "position": { - "x": 40.000000, + "x": 60.000000, "y": -0.000000 }, "alias": "R", @@ -5999,8 +5999,8 @@ "id": "60", "seqid": 21, "position": { - "x": 40.000000, - "y": -1.000000 + "x": 60.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6010,7 +6010,7 @@ "id": "61", "seqid": 20, "position": { - "x": 39.000000, + "x": 58.500000, "y": -0.000000 }, "alias": "P", @@ -6021,7 +6021,7 @@ "id": "62", "seqid": 22, "position": { - "x": 42.000000, + "x": 63.000000, "y": -0.000000 }, "alias": "R", @@ -6032,8 +6032,8 @@ "id": "63", "seqid": 22, "position": { - "x": 42.000000, - "y": -1.000000 + "x": 63.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6043,7 +6043,7 @@ "id": "64", "seqid": 21, "position": { - "x": 41.000000, + "x": 61.500000, "y": -0.000000 }, "alias": "P", @@ -6054,7 +6054,7 @@ "id": "65", "seqid": 23, "position": { - "x": 44.000000, + "x": 66.000000, "y": -0.000000 }, "alias": "R", @@ -6065,8 +6065,8 @@ "id": "66", "seqid": 23, "position": { - "x": 44.000000, - "y": -1.000000 + "x": 66.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6076,7 +6076,7 @@ "id": "67", "seqid": 22, "position": { - "x": 43.000000, + "x": 64.500000, "y": -0.000000 }, "alias": "P", @@ -6087,7 +6087,7 @@ "id": "68", "seqid": 24, "position": { - "x": 46.000000, + "x": 69.000000, "y": -0.000000 }, "alias": "R", @@ -6098,8 +6098,8 @@ "id": "69", "seqid": 24, "position": { - "x": 46.000000, - "y": -1.000000 + "x": 69.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6109,7 +6109,7 @@ "id": "70", "seqid": 23, "position": { - "x": 45.000000, + "x": 67.500000, "y": -0.000000 }, "alias": "P", @@ -6120,7 +6120,7 @@ "id": "71", "seqid": 25, "position": { - "x": 48.000000, + "x": 72.000000, "y": -0.000000 }, "alias": "R", @@ -6131,8 +6131,8 @@ "id": "72", "seqid": 25, "position": { - "x": 48.000000, - "y": -1.000000 + "x": 72.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6142,7 +6142,7 @@ "id": "73", "seqid": 24, "position": { - "x": 47.000000, + "x": 70.500000, "y": -0.000000 }, "alias": "P", @@ -6153,7 +6153,7 @@ "id": "74", "seqid": 26, "position": { - "x": 50.000000, + "x": 75.000000, "y": -0.000000 }, "alias": "R", @@ -6164,8 +6164,8 @@ "id": "75", "seqid": 26, "position": { - "x": 50.000000, - "y": -1.000000 + "x": 75.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -6175,7 +6175,7 @@ "id": "76", "seqid": 25, "position": { - "x": 49.000000, + "x": 73.500000, "y": -0.000000 }, "alias": "P", @@ -6186,7 +6186,7 @@ "id": "77", "seqid": 27, "position": { - "x": 52.000000, + "x": 78.000000, "y": -0.000000 }, "alias": "R", @@ -6197,8 +6197,8 @@ "id": "78", "seqid": 27, "position": { - "x": 52.000000, - "y": -1.000000 + "x": 78.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6208,7 +6208,7 @@ "id": "79", "seqid": 26, "position": { - "x": 51.000000, + "x": 76.500000, "y": -0.000000 }, "alias": "P", @@ -6219,7 +6219,7 @@ "id": "80", "seqid": 28, "position": { - "x": 54.000000, + "x": 81.000000, "y": -0.000000 }, "alias": "R", @@ -6230,8 +6230,8 @@ "id": "81", "seqid": 28, "position": { - "x": 54.000000, - "y": -1.000000 + "x": 81.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6241,7 +6241,7 @@ "id": "82", "seqid": 27, "position": { - "x": 53.000000, + "x": 79.500000, "y": -0.000000 }, "alias": "P", @@ -6252,7 +6252,7 @@ "id": "83", "seqid": 29, "position": { - "x": 56.000000, + "x": 84.000000, "y": -0.000000 }, "alias": "R", @@ -6263,8 +6263,8 @@ "id": "84", "seqid": 29, "position": { - "x": 56.000000, - "y": -1.000000 + "x": 84.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6274,7 +6274,7 @@ "id": "85", "seqid": 28, "position": { - "x": 55.000000, + "x": 82.500000, "y": -0.000000 }, "alias": "P", @@ -6285,7 +6285,7 @@ "id": "86", "seqid": 30, "position": { - "x": 58.000000, + "x": 87.000000, "y": -0.000000 }, "alias": "R", @@ -6296,8 +6296,8 @@ "id": "87", "seqid": 30, "position": { - "x": 58.000000, - "y": -1.000000 + "x": 87.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6307,7 +6307,7 @@ "id": "88", "seqid": 29, "position": { - "x": 57.000000, + "x": 85.500000, "y": -0.000000 }, "alias": "P", @@ -6318,7 +6318,7 @@ "id": "89", "seqid": 31, "position": { - "x": 60.000000, + "x": 90.000000, "y": -0.000000 }, "alias": "R", @@ -6329,8 +6329,8 @@ "id": "90", "seqid": 31, "position": { - "x": 60.000000, - "y": -1.000000 + "x": 90.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6340,7 +6340,7 @@ "id": "91", "seqid": 30, "position": { - "x": 59.000000, + "x": 88.500000, "y": -0.000000 }, "alias": "P", @@ -6351,7 +6351,7 @@ "id": "92", "seqid": 32, "position": { - "x": 62.000000, + "x": 93.000000, "y": -0.000000 }, "alias": "R", @@ -6362,8 +6362,8 @@ "id": "93", "seqid": 32, "position": { - "x": 62.000000, - "y": -1.000000 + "x": 93.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6373,7 +6373,7 @@ "id": "94", "seqid": 31, "position": { - "x": 61.000000, + "x": 91.500000, "y": -0.000000 }, "alias": "P", @@ -6384,7 +6384,7 @@ "id": "95", "seqid": 33, "position": { - "x": 64.000000, + "x": 96.000000, "y": -0.000000 }, "alias": "R", @@ -6395,8 +6395,8 @@ "id": "96", "seqid": 33, "position": { - "x": 64.000000, - "y": -1.000000 + "x": 96.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6406,7 +6406,7 @@ "id": "97", "seqid": 32, "position": { - "x": 63.000000, + "x": 94.500000, "y": -0.000000 }, "alias": "P", @@ -6417,7 +6417,7 @@ "id": "98", "seqid": 34, "position": { - "x": 66.000000, + "x": 99.000000, "y": -0.000000 }, "alias": "R", @@ -6428,8 +6428,8 @@ "id": "99", "seqid": 34, "position": { - "x": 66.000000, - "y": -1.000000 + "x": 99.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6439,7 +6439,7 @@ "id": "100", "seqid": 33, "position": { - "x": 65.000000, + "x": 97.500000, "y": -0.000000 }, "alias": "P", @@ -6450,7 +6450,7 @@ "id": "101", "seqid": 35, "position": { - "x": 68.000000, + "x": 102.000000, "y": -0.000000 }, "alias": "R", @@ -6461,8 +6461,8 @@ "id": "102", "seqid": 35, "position": { - "x": 68.000000, - "y": -1.000000 + "x": 102.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6472,7 +6472,7 @@ "id": "103", "seqid": 34, "position": { - "x": 67.000000, + "x": 100.500000, "y": -0.000000 }, "alias": "P", @@ -6483,7 +6483,7 @@ "id": "104", "seqid": 36, "position": { - "x": 70.000000, + "x": 105.000000, "y": -0.000000 }, "alias": "R", @@ -6494,8 +6494,8 @@ "id": "105", "seqid": 36, "position": { - "x": 70.000000, - "y": -1.000000 + "x": 105.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6505,7 +6505,7 @@ "id": "106", "seqid": 35, "position": { - "x": 69.000000, + "x": 103.500000, "y": -0.000000 }, "alias": "P", @@ -6516,7 +6516,7 @@ "id": "107", "seqid": 37, "position": { - "x": 72.000000, + "x": 108.000000, "y": -0.000000 }, "alias": "R", @@ -6527,8 +6527,8 @@ "id": "108", "seqid": 37, "position": { - "x": 72.000000, - "y": -1.000000 + "x": 108.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6538,7 +6538,7 @@ "id": "109", "seqid": 36, "position": { - "x": 71.000000, + "x": 106.500000, "y": -0.000000 }, "alias": "P", @@ -6549,7 +6549,7 @@ "id": "110", "seqid": 38, "position": { - "x": 74.000000, + "x": 111.000000, "y": -0.000000 }, "alias": "R", @@ -6560,8 +6560,8 @@ "id": "111", "seqid": 38, "position": { - "x": 74.000000, - "y": -1.000000 + "x": 111.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6571,7 +6571,7 @@ "id": "112", "seqid": 37, "position": { - "x": 73.000000, + "x": 109.500000, "y": -0.000000 }, "alias": "P", @@ -6582,7 +6582,7 @@ "id": "113", "seqid": 39, "position": { - "x": 76.000000, + "x": 114.000000, "y": -0.000000 }, "alias": "R", @@ -6593,8 +6593,8 @@ "id": "114", "seqid": 39, "position": { - "x": 76.000000, - "y": -1.000000 + "x": 114.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6604,7 +6604,7 @@ "id": "115", "seqid": 38, "position": { - "x": 75.000000, + "x": 112.500000, "y": -0.000000 }, "alias": "P", @@ -6615,7 +6615,7 @@ "id": "116", "seqid": 40, "position": { - "x": 78.000000, + "x": 117.000000, "y": -0.000000 }, "alias": "R", @@ -6626,8 +6626,8 @@ "id": "117", "seqid": 40, "position": { - "x": 78.000000, - "y": -1.000000 + "x": 117.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6637,7 +6637,7 @@ "id": "118", "seqid": 39, "position": { - "x": 77.000000, + "x": 115.500000, "y": -0.000000 }, "alias": "P", @@ -6648,7 +6648,7 @@ "id": "119", "seqid": 41, "position": { - "x": 80.000000, + "x": 120.000000, "y": -0.000000 }, "alias": "R", @@ -6659,8 +6659,8 @@ "id": "120", "seqid": 41, "position": { - "x": 80.000000, - "y": -1.000000 + "x": 120.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6670,7 +6670,7 @@ "id": "121", "seqid": 40, "position": { - "x": 79.000000, + "x": 118.500000, "y": -0.000000 }, "alias": "P", @@ -6681,7 +6681,7 @@ "id": "122", "seqid": 42, "position": { - "x": 82.000000, + "x": 123.000000, "y": -0.000000 }, "alias": "R", @@ -6692,8 +6692,8 @@ "id": "123", "seqid": 42, "position": { - "x": 82.000000, - "y": -1.000000 + "x": 123.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6703,7 +6703,7 @@ "id": "124", "seqid": 41, "position": { - "x": 81.000000, + "x": 121.500000, "y": -0.000000 }, "alias": "P", @@ -6714,7 +6714,7 @@ "id": "125", "seqid": 43, "position": { - "x": 84.000000, + "x": 126.000000, "y": -0.000000 }, "alias": "R", @@ -6725,8 +6725,8 @@ "id": "126", "seqid": 43, "position": { - "x": 84.000000, - "y": -1.000000 + "x": 126.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6736,7 +6736,7 @@ "id": "127", "seqid": 42, "position": { - "x": 83.000000, + "x": 124.500000, "y": -0.000000 }, "alias": "P", @@ -6747,7 +6747,7 @@ "id": "128", "seqid": 44, "position": { - "x": 86.000000, + "x": 129.000000, "y": -0.000000 }, "alias": "R", @@ -6758,8 +6758,8 @@ "id": "129", "seqid": 44, "position": { - "x": 86.000000, - "y": -1.000000 + "x": 129.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6769,7 +6769,7 @@ "id": "130", "seqid": 43, "position": { - "x": 85.000000, + "x": 127.500000, "y": -0.000000 }, "alias": "P", @@ -6780,7 +6780,7 @@ "id": "131", "seqid": 45, "position": { - "x": 88.000000, + "x": 132.000000, "y": -0.000000 }, "alias": "R", @@ -6791,8 +6791,8 @@ "id": "132", "seqid": 45, "position": { - "x": 88.000000, - "y": -1.000000 + "x": 132.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6802,7 +6802,7 @@ "id": "133", "seqid": 44, "position": { - "x": 87.000000, + "x": 130.500000, "y": -0.000000 }, "alias": "P", @@ -6813,7 +6813,7 @@ "id": "134", "seqid": 46, "position": { - "x": 90.000000, + "x": 135.000000, "y": -0.000000 }, "alias": "R", @@ -6824,8 +6824,8 @@ "id": "135", "seqid": 46, "position": { - "x": 90.000000, - "y": -1.000000 + "x": 135.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6835,7 +6835,7 @@ "id": "136", "seqid": 45, "position": { - "x": 89.000000, + "x": 133.500000, "y": -0.000000 }, "alias": "P", @@ -6846,7 +6846,7 @@ "id": "137", "seqid": 47, "position": { - "x": 92.000000, + "x": 138.000000, "y": -0.000000 }, "alias": "R", @@ -6857,8 +6857,8 @@ "id": "138", "seqid": 47, "position": { - "x": 92.000000, - "y": -1.000000 + "x": 138.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6868,7 +6868,7 @@ "id": "139", "seqid": 46, "position": { - "x": 91.000000, + "x": 136.500000, "y": -0.000000 }, "alias": "P", @@ -6879,7 +6879,7 @@ "id": "140", "seqid": 48, "position": { - "x": 94.000000, + "x": 141.000000, "y": -0.000000 }, "alias": "R", @@ -6890,8 +6890,8 @@ "id": "141", "seqid": 48, "position": { - "x": 94.000000, - "y": -1.000000 + "x": 141.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -6901,7 +6901,7 @@ "id": "142", "seqid": 47, "position": { - "x": 93.000000, + "x": 139.500000, "y": -0.000000 }, "alias": "P", @@ -6912,7 +6912,7 @@ "id": "143", "seqid": 49, "position": { - "x": 96.000000, + "x": 144.000000, "y": -0.000000 }, "alias": "R", @@ -6923,8 +6923,8 @@ "id": "144", "seqid": 49, "position": { - "x": 96.000000, - "y": -1.000000 + "x": 144.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -6934,7 +6934,7 @@ "id": "145", "seqid": 48, "position": { - "x": 95.000000, + "x": 142.500000, "y": -0.000000 }, "alias": "P", @@ -6945,7 +6945,7 @@ "id": "146", "seqid": 50, "position": { - "x": 98.000000, + "x": 147.000000, "y": -0.000000 }, "alias": "R", @@ -6956,8 +6956,8 @@ "id": "147", "seqid": 50, "position": { - "x": 98.000000, - "y": -1.000000 + "x": 147.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -6967,7 +6967,7 @@ "id": "148", "seqid": 49, "position": { - "x": 97.000000, + "x": 145.500000, "y": -0.000000 }, "alias": "P", @@ -6978,7 +6978,7 @@ "id": "149", "seqid": 51, "position": { - "x": 100.000000, + "x": 150.000000, "y": -0.000000 }, "alias": "R", @@ -6989,8 +6989,8 @@ "id": "150", "seqid": 51, "position": { - "x": 100.000000, - "y": -1.000000 + "x": 150.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7000,7 +7000,7 @@ "id": "151", "seqid": 50, "position": { - "x": 99.000000, + "x": 148.500000, "y": -0.000000 }, "alias": "P", @@ -7011,7 +7011,7 @@ "id": "152", "seqid": 52, "position": { - "x": 102.000000, + "x": 153.000000, "y": -0.000000 }, "alias": "R", @@ -7022,8 +7022,8 @@ "id": "153", "seqid": 52, "position": { - "x": 102.000000, - "y": -1.000000 + "x": 153.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7033,7 +7033,7 @@ "id": "154", "seqid": 51, "position": { - "x": 101.000000, + "x": 151.500000, "y": -0.000000 }, "alias": "P", @@ -7044,7 +7044,7 @@ "id": "155", "seqid": 53, "position": { - "x": 104.000000, + "x": 156.000000, "y": -0.000000 }, "alias": "R", @@ -7055,8 +7055,8 @@ "id": "156", "seqid": 53, "position": { - "x": 104.000000, - "y": -1.000000 + "x": 156.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7066,7 +7066,7 @@ "id": "157", "seqid": 52, "position": { - "x": 103.000000, + "x": 154.500000, "y": -0.000000 }, "alias": "P", @@ -7077,7 +7077,7 @@ "id": "158", "seqid": 54, "position": { - "x": 106.000000, + "x": 159.000000, "y": -0.000000 }, "alias": "R", @@ -7088,8 +7088,8 @@ "id": "159", "seqid": 54, "position": { - "x": 106.000000, - "y": -1.000000 + "x": 159.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7099,7 +7099,7 @@ "id": "160", "seqid": 53, "position": { - "x": 105.000000, + "x": 157.500000, "y": -0.000000 }, "alias": "P", @@ -7110,7 +7110,7 @@ "id": "161", "seqid": 55, "position": { - "x": 108.000000, + "x": 162.000000, "y": -0.000000 }, "alias": "R", @@ -7121,8 +7121,8 @@ "id": "162", "seqid": 55, "position": { - "x": 108.000000, - "y": -1.000000 + "x": 162.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7132,7 +7132,7 @@ "id": "163", "seqid": 54, "position": { - "x": 107.000000, + "x": 160.500000, "y": -0.000000 }, "alias": "P", @@ -7143,7 +7143,7 @@ "id": "164", "seqid": 56, "position": { - "x": 110.000000, + "x": 165.000000, "y": -0.000000 }, "alias": "R", @@ -7154,8 +7154,8 @@ "id": "165", "seqid": 56, "position": { - "x": 110.000000, - "y": -1.000000 + "x": 165.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7165,7 +7165,7 @@ "id": "166", "seqid": 55, "position": { - "x": 109.000000, + "x": 163.500000, "y": -0.000000 }, "alias": "P", @@ -7176,7 +7176,7 @@ "id": "167", "seqid": 57, "position": { - "x": 112.000000, + "x": 168.000000, "y": -0.000000 }, "alias": "R", @@ -7187,8 +7187,8 @@ "id": "168", "seqid": 57, "position": { - "x": 112.000000, - "y": -1.000000 + "x": 168.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7198,7 +7198,7 @@ "id": "169", "seqid": 56, "position": { - "x": 111.000000, + "x": 166.500000, "y": -0.000000 }, "alias": "P", @@ -7209,7 +7209,7 @@ "id": "170", "seqid": 58, "position": { - "x": 114.000000, + "x": 171.000000, "y": -0.000000 }, "alias": "R", @@ -7220,8 +7220,8 @@ "id": "171", "seqid": 58, "position": { - "x": 114.000000, - "y": -1.000000 + "x": 171.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7231,7 +7231,7 @@ "id": "172", "seqid": 57, "position": { - "x": 113.000000, + "x": 169.500000, "y": -0.000000 }, "alias": "P", @@ -7242,7 +7242,7 @@ "id": "173", "seqid": 59, "position": { - "x": 116.000000, + "x": 174.000000, "y": -0.000000 }, "alias": "R", @@ -7253,8 +7253,8 @@ "id": "174", "seqid": 59, "position": { - "x": 116.000000, - "y": -1.000000 + "x": 174.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7264,7 +7264,7 @@ "id": "175", "seqid": 58, "position": { - "x": 115.000000, + "x": 172.500000, "y": -0.000000 }, "alias": "P", @@ -7275,7 +7275,7 @@ "id": "176", "seqid": 60, "position": { - "x": 118.000000, + "x": 177.000000, "y": -0.000000 }, "alias": "R", @@ -7286,8 +7286,8 @@ "id": "177", "seqid": 60, "position": { - "x": 118.000000, - "y": -1.000000 + "x": 177.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7297,7 +7297,7 @@ "id": "178", "seqid": 59, "position": { - "x": 117.000000, + "x": 175.500000, "y": -0.000000 }, "alias": "P", @@ -7308,7 +7308,7 @@ "id": "179", "seqid": 61, "position": { - "x": 120.000000, + "x": 180.000000, "y": -0.000000 }, "alias": "R", @@ -7319,8 +7319,8 @@ "id": "180", "seqid": 61, "position": { - "x": 120.000000, - "y": -1.000000 + "x": 180.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7330,7 +7330,7 @@ "id": "181", "seqid": 60, "position": { - "x": 119.000000, + "x": 178.500000, "y": -0.000000 }, "alias": "P", @@ -7341,7 +7341,7 @@ "id": "182", "seqid": 62, "position": { - "x": 122.000000, + "x": 183.000000, "y": -0.000000 }, "alias": "R", @@ -7352,8 +7352,8 @@ "id": "183", "seqid": 62, "position": { - "x": 122.000000, - "y": -1.000000 + "x": 183.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7363,7 +7363,7 @@ "id": "184", "seqid": 61, "position": { - "x": 121.000000, + "x": 181.500000, "y": -0.000000 }, "alias": "P", @@ -7374,7 +7374,7 @@ "id": "185", "seqid": 63, "position": { - "x": 124.000000, + "x": 186.000000, "y": -0.000000 }, "alias": "R", @@ -7385,8 +7385,8 @@ "id": "186", "seqid": 63, "position": { - "x": 124.000000, - "y": -1.000000 + "x": 186.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7396,7 +7396,7 @@ "id": "187", "seqid": 62, "position": { - "x": 123.000000, + "x": 184.500000, "y": -0.000000 }, "alias": "P", @@ -7407,7 +7407,7 @@ "id": "188", "seqid": 64, "position": { - "x": 126.000000, + "x": 189.000000, "y": -0.000000 }, "alias": "R", @@ -7418,8 +7418,8 @@ "id": "189", "seqid": 64, "position": { - "x": 126.000000, - "y": -1.000000 + "x": 189.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7429,7 +7429,7 @@ "id": "190", "seqid": 63, "position": { - "x": 125.000000, + "x": 187.500000, "y": -0.000000 }, "alias": "P", @@ -7440,7 +7440,7 @@ "id": "191", "seqid": 65, "position": { - "x": 128.000000, + "x": 192.000000, "y": -0.000000 }, "alias": "R", @@ -7451,8 +7451,8 @@ "id": "192", "seqid": 65, "position": { - "x": 128.000000, - "y": -1.000000 + "x": 192.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7462,7 +7462,7 @@ "id": "193", "seqid": 64, "position": { - "x": 127.000000, + "x": 190.500000, "y": -0.000000 }, "alias": "P", @@ -7473,7 +7473,7 @@ "id": "194", "seqid": 66, "position": { - "x": 130.000000, + "x": 195.000000, "y": -0.000000 }, "alias": "R", @@ -7484,8 +7484,8 @@ "id": "195", "seqid": 66, "position": { - "x": 130.000000, - "y": -1.000000 + "x": 195.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7495,7 +7495,7 @@ "id": "196", "seqid": 65, "position": { - "x": 129.000000, + "x": 193.500000, "y": -0.000000 }, "alias": "P", @@ -7506,7 +7506,7 @@ "id": "197", "seqid": 67, "position": { - "x": 132.000000, + "x": 198.000000, "y": -0.000000 }, "alias": "R", @@ -7517,8 +7517,8 @@ "id": "198", "seqid": 67, "position": { - "x": 132.000000, - "y": -1.000000 + "x": 198.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7528,7 +7528,7 @@ "id": "199", "seqid": 66, "position": { - "x": 131.000000, + "x": 196.500000, "y": -0.000000 }, "alias": "P", @@ -7539,7 +7539,7 @@ "id": "200", "seqid": 68, "position": { - "x": 134.000000, + "x": 201.000000, "y": -0.000000 }, "alias": "R", @@ -7550,8 +7550,8 @@ "id": "201", "seqid": 68, "position": { - "x": 134.000000, - "y": -1.000000 + "x": 201.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7561,7 +7561,7 @@ "id": "202", "seqid": 67, "position": { - "x": 133.000000, + "x": 199.500000, "y": -0.000000 }, "alias": "P", @@ -7572,7 +7572,7 @@ "id": "203", "seqid": 69, "position": { - "x": 136.000000, + "x": 204.000000, "y": -0.000000 }, "alias": "R", @@ -7583,8 +7583,8 @@ "id": "204", "seqid": 69, "position": { - "x": 136.000000, - "y": -1.000000 + "x": 204.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7594,7 +7594,7 @@ "id": "205", "seqid": 68, "position": { - "x": 135.000000, + "x": 202.500000, "y": -0.000000 }, "alias": "P", @@ -7605,7 +7605,7 @@ "id": "206", "seqid": 70, "position": { - "x": 138.000000, + "x": 207.000000, "y": -0.000000 }, "alias": "R", @@ -7616,8 +7616,8 @@ "id": "207", "seqid": 70, "position": { - "x": 138.000000, - "y": -1.000000 + "x": 207.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7627,7 +7627,7 @@ "id": "208", "seqid": 69, "position": { - "x": 137.000000, + "x": 205.500000, "y": -0.000000 }, "alias": "P", @@ -7638,7 +7638,7 @@ "id": "209", "seqid": 71, "position": { - "x": 140.000000, + "x": 210.000000, "y": -0.000000 }, "alias": "R", @@ -7649,8 +7649,8 @@ "id": "210", "seqid": 71, "position": { - "x": 140.000000, - "y": -1.000000 + "x": 210.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7660,7 +7660,7 @@ "id": "211", "seqid": 70, "position": { - "x": 139.000000, + "x": 208.500000, "y": -0.000000 }, "alias": "P", @@ -7671,7 +7671,7 @@ "id": "212", "seqid": 72, "position": { - "x": 142.000000, + "x": 213.000000, "y": -0.000000 }, "alias": "R", @@ -7682,8 +7682,8 @@ "id": "213", "seqid": 72, "position": { - "x": 142.000000, - "y": -1.000000 + "x": 213.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7693,7 +7693,7 @@ "id": "214", "seqid": 71, "position": { - "x": 141.000000, + "x": 211.500000, "y": -0.000000 }, "alias": "P", @@ -7704,7 +7704,7 @@ "id": "215", "seqid": 73, "position": { - "x": 144.000000, + "x": 216.000000, "y": -0.000000 }, "alias": "R", @@ -7715,8 +7715,8 @@ "id": "216", "seqid": 73, "position": { - "x": 144.000000, - "y": -1.000000 + "x": 216.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7726,7 +7726,7 @@ "id": "217", "seqid": 72, "position": { - "x": 143.000000, + "x": 214.500000, "y": -0.000000 }, "alias": "P", @@ -7737,7 +7737,7 @@ "id": "218", "seqid": 74, "position": { - "x": 146.000000, + "x": 219.000000, "y": -0.000000 }, "alias": "R", @@ -7748,8 +7748,8 @@ "id": "219", "seqid": 74, "position": { - "x": 146.000000, - "y": -1.000000 + "x": 219.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7759,7 +7759,7 @@ "id": "220", "seqid": 73, "position": { - "x": 145.000000, + "x": 217.500000, "y": -0.000000 }, "alias": "P", @@ -7770,7 +7770,7 @@ "id": "221", "seqid": 75, "position": { - "x": 148.000000, + "x": 222.000000, "y": -0.000000 }, "alias": "R", @@ -7781,8 +7781,8 @@ "id": "222", "seqid": 75, "position": { - "x": 148.000000, - "y": -1.000000 + "x": 222.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7792,7 +7792,7 @@ "id": "223", "seqid": 74, "position": { - "x": 147.000000, + "x": 220.500000, "y": -0.000000 }, "alias": "P", @@ -7803,7 +7803,7 @@ "id": "224", "seqid": 76, "position": { - "x": 150.000000, + "x": 225.000000, "y": -0.000000 }, "alias": "R", @@ -7814,8 +7814,8 @@ "id": "225", "seqid": 76, "position": { - "x": 150.000000, - "y": -1.000000 + "x": 225.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7825,7 +7825,7 @@ "id": "226", "seqid": 75, "position": { - "x": 149.000000, + "x": 223.500000, "y": -0.000000 }, "alias": "P", @@ -7836,7 +7836,7 @@ "id": "227", "seqid": 77, "position": { - "x": 152.000000, + "x": 228.000000, "y": -0.000000 }, "alias": "R", @@ -7847,8 +7847,8 @@ "id": "228", "seqid": 77, "position": { - "x": 152.000000, - "y": -1.000000 + "x": 228.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7858,7 +7858,7 @@ "id": "229", "seqid": 76, "position": { - "x": 151.000000, + "x": 226.500000, "y": -0.000000 }, "alias": "P", @@ -7869,7 +7869,7 @@ "id": "230", "seqid": 78, "position": { - "x": 154.000000, + "x": 231.000000, "y": -0.000000 }, "alias": "R", @@ -7880,8 +7880,8 @@ "id": "231", "seqid": 78, "position": { - "x": 154.000000, - "y": -1.000000 + "x": 231.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -7891,7 +7891,7 @@ "id": "232", "seqid": 77, "position": { - "x": 153.000000, + "x": 229.500000, "y": -0.000000 }, "alias": "P", @@ -7902,7 +7902,7 @@ "id": "233", "seqid": 79, "position": { - "x": 156.000000, + "x": 234.000000, "y": -0.000000 }, "alias": "R", @@ -7913,8 +7913,8 @@ "id": "234", "seqid": 79, "position": { - "x": 156.000000, - "y": -1.000000 + "x": 234.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -7924,7 +7924,7 @@ "id": "235", "seqid": 78, "position": { - "x": 155.000000, + "x": 232.500000, "y": -0.000000 }, "alias": "P", @@ -7935,7 +7935,7 @@ "id": "236", "seqid": 80, "position": { - "x": 158.000000, + "x": 237.000000, "y": -0.000000 }, "alias": "R", @@ -7946,8 +7946,8 @@ "id": "237", "seqid": 80, "position": { - "x": 158.000000, - "y": -1.000000 + "x": 237.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -7957,7 +7957,7 @@ "id": "238", "seqid": 79, "position": { - "x": 157.000000, + "x": 235.500000, "y": -0.000000 }, "alias": "P", @@ -7968,7 +7968,7 @@ "id": "239", "seqid": 81, "position": { - "x": 160.000000, + "x": 240.000000, "y": -0.000000 }, "alias": "R", @@ -7979,8 +7979,8 @@ "id": "240", "seqid": 81, "position": { - "x": 160.000000, - "y": -1.000000 + "x": 240.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -7990,7 +7990,7 @@ "id": "241", "seqid": 80, "position": { - "x": 159.000000, + "x": 238.500000, "y": -0.000000 }, "alias": "P", @@ -8001,7 +8001,7 @@ "id": "242", "seqid": 82, "position": { - "x": 162.000000, + "x": 243.000000, "y": -0.000000 }, "alias": "R", @@ -8012,8 +8012,8 @@ "id": "243", "seqid": 82, "position": { - "x": 162.000000, - "y": -1.000000 + "x": 243.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8023,7 +8023,7 @@ "id": "244", "seqid": 81, "position": { - "x": 161.000000, + "x": 241.500000, "y": -0.000000 }, "alias": "P", @@ -8034,7 +8034,7 @@ "id": "245", "seqid": 83, "position": { - "x": 164.000000, + "x": 246.000000, "y": -0.000000 }, "alias": "R", @@ -8045,8 +8045,8 @@ "id": "246", "seqid": 83, "position": { - "x": 164.000000, - "y": -1.000000 + "x": 246.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8056,7 +8056,7 @@ "id": "247", "seqid": 82, "position": { - "x": 163.000000, + "x": 244.500000, "y": -0.000000 }, "alias": "P", @@ -8067,7 +8067,7 @@ "id": "248", "seqid": 84, "position": { - "x": 166.000000, + "x": 249.000000, "y": -0.000000 }, "alias": "R", @@ -8078,8 +8078,8 @@ "id": "249", "seqid": 84, "position": { - "x": 166.000000, - "y": -1.000000 + "x": 249.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8089,7 +8089,7 @@ "id": "250", "seqid": 83, "position": { - "x": 165.000000, + "x": 247.500000, "y": -0.000000 }, "alias": "P", @@ -8100,7 +8100,7 @@ "id": "251", "seqid": 85, "position": { - "x": 168.000000, + "x": 252.000000, "y": -0.000000 }, "alias": "R", @@ -8111,8 +8111,8 @@ "id": "252", "seqid": 85, "position": { - "x": 168.000000, - "y": -1.000000 + "x": 252.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8122,7 +8122,7 @@ "id": "253", "seqid": 84, "position": { - "x": 167.000000, + "x": 250.500000, "y": -0.000000 }, "alias": "P", @@ -8133,7 +8133,7 @@ "id": "254", "seqid": 86, "position": { - "x": 170.000000, + "x": 255.000000, "y": -0.000000 }, "alias": "R", @@ -8144,8 +8144,8 @@ "id": "255", "seqid": 86, "position": { - "x": 170.000000, - "y": -1.000000 + "x": 255.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8155,7 +8155,7 @@ "id": "256", "seqid": 85, "position": { - "x": 169.000000, + "x": 253.500000, "y": -0.000000 }, "alias": "P", @@ -8166,7 +8166,7 @@ "id": "257", "seqid": 87, "position": { - "x": 172.000000, + "x": 258.000000, "y": -0.000000 }, "alias": "R", @@ -8177,8 +8177,8 @@ "id": "258", "seqid": 87, "position": { - "x": 172.000000, - "y": -1.000000 + "x": 258.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8188,7 +8188,7 @@ "id": "259", "seqid": 86, "position": { - "x": 171.000000, + "x": 256.500000, "y": -0.000000 }, "alias": "P", @@ -8199,7 +8199,7 @@ "id": "260", "seqid": 88, "position": { - "x": 174.000000, + "x": 261.000000, "y": -0.000000 }, "alias": "R", @@ -8210,8 +8210,8 @@ "id": "261", "seqid": 88, "position": { - "x": 174.000000, - "y": -1.000000 + "x": 261.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8221,7 +8221,7 @@ "id": "262", "seqid": 87, "position": { - "x": 173.000000, + "x": 259.500000, "y": -0.000000 }, "alias": "P", @@ -8232,7 +8232,7 @@ "id": "263", "seqid": 89, "position": { - "x": 176.000000, + "x": 264.000000, "y": -0.000000 }, "alias": "R", @@ -8243,8 +8243,8 @@ "id": "264", "seqid": 89, "position": { - "x": 176.000000, - "y": -1.000000 + "x": 264.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8254,7 +8254,7 @@ "id": "265", "seqid": 88, "position": { - "x": 175.000000, + "x": 262.500000, "y": -0.000000 }, "alias": "P", @@ -8265,7 +8265,7 @@ "id": "266", "seqid": 90, "position": { - "x": 178.000000, + "x": 267.000000, "y": -0.000000 }, "alias": "R", @@ -8276,8 +8276,8 @@ "id": "267", "seqid": 90, "position": { - "x": 178.000000, - "y": -1.000000 + "x": 267.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8287,7 +8287,7 @@ "id": "268", "seqid": 89, "position": { - "x": 177.000000, + "x": 265.500000, "y": -0.000000 }, "alias": "P", @@ -8298,7 +8298,7 @@ "id": "269", "seqid": 91, "position": { - "x": 180.000000, + "x": 270.000000, "y": -0.000000 }, "alias": "R", @@ -8309,8 +8309,8 @@ "id": "270", "seqid": 91, "position": { - "x": 180.000000, - "y": -1.000000 + "x": 270.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8320,7 +8320,7 @@ "id": "271", "seqid": 90, "position": { - "x": 179.000000, + "x": 268.500000, "y": -0.000000 }, "alias": "P", @@ -8331,7 +8331,7 @@ "id": "272", "seqid": 92, "position": { - "x": 182.000000, + "x": 273.000000, "y": -0.000000 }, "alias": "R", @@ -8342,8 +8342,8 @@ "id": "273", "seqid": 92, "position": { - "x": 182.000000, - "y": -1.000000 + "x": 273.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8353,7 +8353,7 @@ "id": "274", "seqid": 91, "position": { - "x": 181.000000, + "x": 271.500000, "y": -0.000000 }, "alias": "P", @@ -8364,7 +8364,7 @@ "id": "275", "seqid": 93, "position": { - "x": 184.000000, + "x": 276.000000, "y": -0.000000 }, "alias": "R", @@ -8375,8 +8375,8 @@ "id": "276", "seqid": 93, "position": { - "x": 184.000000, - "y": -1.000000 + "x": 276.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8386,7 +8386,7 @@ "id": "277", "seqid": 92, "position": { - "x": 183.000000, + "x": 274.500000, "y": -0.000000 }, "alias": "P", @@ -8397,7 +8397,7 @@ "id": "278", "seqid": 94, "position": { - "x": 186.000000, + "x": 279.000000, "y": -0.000000 }, "alias": "R", @@ -8408,8 +8408,8 @@ "id": "279", "seqid": 94, "position": { - "x": 186.000000, - "y": -1.000000 + "x": 279.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8419,7 +8419,7 @@ "id": "280", "seqid": 93, "position": { - "x": 185.000000, + "x": 277.500000, "y": -0.000000 }, "alias": "P", @@ -8430,7 +8430,7 @@ "id": "281", "seqid": 95, "position": { - "x": 188.000000, + "x": 282.000000, "y": -0.000000 }, "alias": "R", @@ -8441,8 +8441,8 @@ "id": "282", "seqid": 95, "position": { - "x": 188.000000, - "y": -1.000000 + "x": 282.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8452,7 +8452,7 @@ "id": "283", "seqid": 94, "position": { - "x": 187.000000, + "x": 280.500000, "y": -0.000000 }, "alias": "P", @@ -8463,7 +8463,7 @@ "id": "284", "seqid": 96, "position": { - "x": 190.000000, + "x": 285.000000, "y": -0.000000 }, "alias": "R", @@ -8474,8 +8474,8 @@ "id": "285", "seqid": 96, "position": { - "x": 190.000000, - "y": -1.000000 + "x": 285.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8485,7 +8485,7 @@ "id": "286", "seqid": 95, "position": { - "x": 189.000000, + "x": 283.500000, "y": -0.000000 }, "alias": "P", @@ -8496,7 +8496,7 @@ "id": "287", "seqid": 97, "position": { - "x": 192.000000, + "x": 288.000000, "y": -0.000000 }, "alias": "R", @@ -8507,8 +8507,8 @@ "id": "288", "seqid": 97, "position": { - "x": 192.000000, - "y": -1.000000 + "x": 288.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8518,7 +8518,7 @@ "id": "289", "seqid": 96, "position": { - "x": 191.000000, + "x": 286.500000, "y": -0.000000 }, "alias": "P", @@ -8529,7 +8529,7 @@ "id": "290", "seqid": 98, "position": { - "x": 194.000000, + "x": 291.000000, "y": -0.000000 }, "alias": "R", @@ -8540,8 +8540,8 @@ "id": "291", "seqid": 98, "position": { - "x": 194.000000, - "y": -1.000000 + "x": 291.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8551,7 +8551,7 @@ "id": "292", "seqid": 97, "position": { - "x": 193.000000, + "x": 289.500000, "y": -0.000000 }, "alias": "P", @@ -8562,7 +8562,7 @@ "id": "293", "seqid": 99, "position": { - "x": 196.000000, + "x": 294.000000, "y": -0.000000 }, "alias": "R", @@ -8573,8 +8573,8 @@ "id": "294", "seqid": 99, "position": { - "x": 196.000000, - "y": -1.000000 + "x": 294.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8584,7 +8584,7 @@ "id": "295", "seqid": 98, "position": { - "x": 195.000000, + "x": 292.500000, "y": -0.000000 }, "alias": "P", @@ -8595,7 +8595,7 @@ "id": "296", "seqid": 100, "position": { - "x": 198.000000, + "x": 297.000000, "y": -0.000000 }, "alias": "R", @@ -8606,8 +8606,8 @@ "id": "297", "seqid": 100, "position": { - "x": 198.000000, - "y": -1.000000 + "x": 297.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8617,7 +8617,7 @@ "id": "298", "seqid": 99, "position": { - "x": 197.000000, + "x": 295.500000, "y": -0.000000 }, "alias": "P", @@ -8628,7 +8628,7 @@ "id": "299", "seqid": 101, "position": { - "x": 200.000000, + "x": 300.000000, "y": -0.000000 }, "alias": "R", @@ -8639,8 +8639,8 @@ "id": "300", "seqid": 101, "position": { - "x": 200.000000, - "y": -1.000000 + "x": 300.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8650,7 +8650,7 @@ "id": "301", "seqid": 100, "position": { - "x": 199.000000, + "x": 298.500000, "y": -0.000000 }, "alias": "P", @@ -8661,7 +8661,7 @@ "id": "302", "seqid": 102, "position": { - "x": 202.000000, + "x": 303.000000, "y": -0.000000 }, "alias": "R", @@ -8672,8 +8672,8 @@ "id": "303", "seqid": 102, "position": { - "x": 202.000000, - "y": -1.000000 + "x": 303.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8683,7 +8683,7 @@ "id": "304", "seqid": 101, "position": { - "x": 201.000000, + "x": 301.500000, "y": -0.000000 }, "alias": "P", @@ -8694,7 +8694,7 @@ "id": "305", "seqid": 103, "position": { - "x": 204.000000, + "x": 306.000000, "y": -0.000000 }, "alias": "R", @@ -8705,8 +8705,8 @@ "id": "306", "seqid": 103, "position": { - "x": 204.000000, - "y": -1.000000 + "x": 306.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8716,7 +8716,7 @@ "id": "307", "seqid": 102, "position": { - "x": 203.000000, + "x": 304.500000, "y": -0.000000 }, "alias": "P", @@ -8727,7 +8727,7 @@ "id": "308", "seqid": 104, "position": { - "x": 206.000000, + "x": 309.000000, "y": -0.000000 }, "alias": "R", @@ -8738,8 +8738,8 @@ "id": "309", "seqid": 104, "position": { - "x": 206.000000, - "y": -1.000000 + "x": 309.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8749,7 +8749,7 @@ "id": "310", "seqid": 103, "position": { - "x": 205.000000, + "x": 307.500000, "y": -0.000000 }, "alias": "P", @@ -8760,7 +8760,7 @@ "id": "311", "seqid": 105, "position": { - "x": 208.000000, + "x": 312.000000, "y": -0.000000 }, "alias": "R", @@ -8771,8 +8771,8 @@ "id": "312", "seqid": 105, "position": { - "x": 208.000000, - "y": -1.000000 + "x": 312.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8782,7 +8782,7 @@ "id": "313", "seqid": 104, "position": { - "x": 207.000000, + "x": 310.500000, "y": -0.000000 }, "alias": "P", @@ -8793,7 +8793,7 @@ "id": "314", "seqid": 106, "position": { - "x": 210.000000, + "x": 315.000000, "y": -0.000000 }, "alias": "R", @@ -8804,8 +8804,8 @@ "id": "315", "seqid": 106, "position": { - "x": 210.000000, - "y": -1.000000 + "x": 315.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -8815,7 +8815,7 @@ "id": "316", "seqid": 105, "position": { - "x": 209.000000, + "x": 313.500000, "y": -0.000000 }, "alias": "P", @@ -8826,7 +8826,7 @@ "id": "317", "seqid": 107, "position": { - "x": 212.000000, + "x": 318.000000, "y": -0.000000 }, "alias": "R", @@ -8837,8 +8837,8 @@ "id": "318", "seqid": 107, "position": { - "x": 212.000000, - "y": -1.000000 + "x": 318.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -8848,7 +8848,7 @@ "id": "319", "seqid": 106, "position": { - "x": 211.000000, + "x": 316.500000, "y": -0.000000 }, "alias": "P", @@ -8859,7 +8859,7 @@ "id": "320", "seqid": 108, "position": { - "x": 214.000000, + "x": 321.000000, "y": -0.000000 }, "alias": "R", @@ -8870,8 +8870,8 @@ "id": "321", "seqid": 108, "position": { - "x": 214.000000, - "y": -1.000000 + "x": 321.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8881,7 +8881,7 @@ "id": "322", "seqid": 107, "position": { - "x": 213.000000, + "x": 319.500000, "y": -0.000000 }, "alias": "P", @@ -8892,7 +8892,7 @@ "id": "323", "seqid": 109, "position": { - "x": 216.000000, + "x": 324.000000, "y": -0.000000 }, "alias": "R", @@ -8903,8 +8903,8 @@ "id": "324", "seqid": 109, "position": { - "x": 216.000000, - "y": -1.000000 + "x": 324.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8914,7 +8914,7 @@ "id": "325", "seqid": 108, "position": { - "x": 215.000000, + "x": 322.500000, "y": -0.000000 }, "alias": "P", @@ -8925,7 +8925,7 @@ "id": "326", "seqid": 110, "position": { - "x": 218.000000, + "x": 327.000000, "y": -0.000000 }, "alias": "R", @@ -8936,8 +8936,8 @@ "id": "327", "seqid": 110, "position": { - "x": 218.000000, - "y": -1.000000 + "x": 327.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -8947,7 +8947,7 @@ "id": "328", "seqid": 109, "position": { - "x": 217.000000, + "x": 325.500000, "y": -0.000000 }, "alias": "P", @@ -8958,7 +8958,7 @@ "id": "329", "seqid": 111, "position": { - "x": 220.000000, + "x": 330.000000, "y": -0.000000 }, "alias": "R", @@ -8969,8 +8969,8 @@ "id": "330", "seqid": 111, "position": { - "x": 220.000000, - "y": -1.000000 + "x": 330.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -8980,7 +8980,7 @@ "id": "331", "seqid": 110, "position": { - "x": 219.000000, + "x": 328.500000, "y": -0.000000 }, "alias": "P", @@ -8991,7 +8991,7 @@ "id": "332", "seqid": 112, "position": { - "x": 222.000000, + "x": 333.000000, "y": -0.000000 }, "alias": "R", @@ -9002,8 +9002,8 @@ "id": "333", "seqid": 112, "position": { - "x": 222.000000, - "y": -1.000000 + "x": 333.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9013,7 +9013,7 @@ "id": "334", "seqid": 111, "position": { - "x": 221.000000, + "x": 331.500000, "y": -0.000000 }, "alias": "P", @@ -9024,7 +9024,7 @@ "id": "335", "seqid": 113, "position": { - "x": 224.000000, + "x": 336.000000, "y": -0.000000 }, "alias": "R", @@ -9035,8 +9035,8 @@ "id": "336", "seqid": 113, "position": { - "x": 224.000000, - "y": -1.000000 + "x": 336.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9046,7 +9046,7 @@ "id": "337", "seqid": 112, "position": { - "x": 223.000000, + "x": 334.500000, "y": -0.000000 }, "alias": "P", @@ -9057,7 +9057,7 @@ "id": "338", "seqid": 114, "position": { - "x": 226.000000, + "x": 339.000000, "y": -0.000000 }, "alias": "R", @@ -9068,8 +9068,8 @@ "id": "339", "seqid": 114, "position": { - "x": 226.000000, - "y": -1.000000 + "x": 339.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9079,7 +9079,7 @@ "id": "340", "seqid": 113, "position": { - "x": 225.000000, + "x": 337.500000, "y": -0.000000 }, "alias": "P", @@ -9090,7 +9090,7 @@ "id": "341", "seqid": 115, "position": { - "x": 228.000000, + "x": 342.000000, "y": -0.000000 }, "alias": "R", @@ -9101,8 +9101,8 @@ "id": "342", "seqid": 115, "position": { - "x": 228.000000, - "y": -1.000000 + "x": 342.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9112,7 +9112,7 @@ "id": "343", "seqid": 114, "position": { - "x": 227.000000, + "x": 340.500000, "y": -0.000000 }, "alias": "P", @@ -9123,7 +9123,7 @@ "id": "344", "seqid": 116, "position": { - "x": 230.000000, + "x": 345.000000, "y": -0.000000 }, "alias": "R", @@ -9134,8 +9134,8 @@ "id": "345", "seqid": 116, "position": { - "x": 230.000000, - "y": -1.000000 + "x": 345.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9145,7 +9145,7 @@ "id": "346", "seqid": 115, "position": { - "x": 229.000000, + "x": 343.500000, "y": -0.000000 }, "alias": "P", @@ -9156,7 +9156,7 @@ "id": "347", "seqid": 117, "position": { - "x": 232.000000, + "x": 348.000000, "y": -0.000000 }, "alias": "R", @@ -9167,8 +9167,8 @@ "id": "348", "seqid": 117, "position": { - "x": 232.000000, - "y": -1.000000 + "x": 348.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9178,7 +9178,7 @@ "id": "349", "seqid": 116, "position": { - "x": 231.000000, + "x": 346.500000, "y": -0.000000 }, "alias": "P", @@ -9189,7 +9189,7 @@ "id": "350", "seqid": 118, "position": { - "x": 234.000000, + "x": 351.000000, "y": -0.000000 }, "alias": "R", @@ -9200,8 +9200,8 @@ "id": "351", "seqid": 118, "position": { - "x": 234.000000, - "y": -1.000000 + "x": 351.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9211,7 +9211,7 @@ "id": "352", "seqid": 117, "position": { - "x": 233.000000, + "x": 349.500000, "y": -0.000000 }, "alias": "P", @@ -9222,7 +9222,7 @@ "id": "353", "seqid": 119, "position": { - "x": 236.000000, + "x": 354.000000, "y": -0.000000 }, "alias": "R", @@ -9233,8 +9233,8 @@ "id": "354", "seqid": 119, "position": { - "x": 236.000000, - "y": -1.000000 + "x": 354.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9244,7 +9244,7 @@ "id": "355", "seqid": 118, "position": { - "x": 235.000000, + "x": 352.500000, "y": -0.000000 }, "alias": "P", @@ -9255,7 +9255,7 @@ "id": "356", "seqid": 120, "position": { - "x": 238.000000, + "x": 357.000000, "y": -0.000000 }, "alias": "R", @@ -9266,8 +9266,8 @@ "id": "357", "seqid": 120, "position": { - "x": 238.000000, - "y": -1.000000 + "x": 357.000000, + "y": -1.500000 }, "alias": "U", "templateId": "U___Uracil" @@ -9277,7 +9277,7 @@ "id": "358", "seqid": 119, "position": { - "x": 237.000000, + "x": 355.500000, "y": -0.000000 }, "alias": "P", @@ -9288,7 +9288,7 @@ "id": "359", "seqid": 121, "position": { - "x": 240.000000, + "x": 360.000000, "y": -0.000000 }, "alias": "R", @@ -9299,8 +9299,8 @@ "id": "360", "seqid": 121, "position": { - "x": 240.000000, - "y": -1.000000 + "x": 360.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9310,7 +9310,7 @@ "id": "361", "seqid": 120, "position": { - "x": 239.000000, + "x": 358.500000, "y": -0.000000 }, "alias": "P", @@ -9321,7 +9321,7 @@ "id": "362", "seqid": 122, "position": { - "x": 242.000000, + "x": 363.000000, "y": -0.000000 }, "alias": "R", @@ -9332,8 +9332,8 @@ "id": "363", "seqid": 122, "position": { - "x": 242.000000, - "y": -1.000000 + "x": 363.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9343,7 +9343,7 @@ "id": "364", "seqid": 121, "position": { - "x": 241.000000, + "x": 361.500000, "y": -0.000000 }, "alias": "P", @@ -9354,7 +9354,7 @@ "id": "365", "seqid": 123, "position": { - "x": 244.000000, + "x": 366.000000, "y": -0.000000 }, "alias": "R", @@ -9365,8 +9365,8 @@ "id": "366", "seqid": 123, "position": { - "x": 244.000000, - "y": -1.000000 + "x": 366.000000, + "y": -1.500000 }, "alias": "C", "templateId": "C___Cytosine" @@ -9376,7 +9376,7 @@ "id": "367", "seqid": 122, "position": { - "x": 243.000000, + "x": 364.500000, "y": -0.000000 }, "alias": "P", @@ -9387,7 +9387,7 @@ "id": "368", "seqid": 124, "position": { - "x": 246.000000, + "x": 369.000000, "y": -0.000000 }, "alias": "R", @@ -9398,8 +9398,8 @@ "id": "369", "seqid": 124, "position": { - "x": 246.000000, - "y": -1.000000 + "x": 369.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9409,7 +9409,7 @@ "id": "370", "seqid": 123, "position": { - "x": 245.000000, + "x": 367.500000, "y": -0.000000 }, "alias": "P", @@ -9420,7 +9420,7 @@ "id": "371", "seqid": 125, "position": { - "x": 248.000000, + "x": 372.000000, "y": -0.000000 }, "alias": "R", @@ -9431,8 +9431,8 @@ "id": "372", "seqid": 125, "position": { - "x": 248.000000, - "y": -1.000000 + "x": 372.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9442,7 +9442,7 @@ "id": "373", "seqid": 124, "position": { - "x": 247.000000, + "x": 370.500000, "y": -0.000000 }, "alias": "P", @@ -9453,7 +9453,7 @@ "id": "374", "seqid": 126, "position": { - "x": 250.000000, + "x": 375.000000, "y": -0.000000 }, "alias": "R", @@ -9464,8 +9464,8 @@ "id": "375", "seqid": 126, "position": { - "x": 250.000000, - "y": -1.000000 + "x": 375.000000, + "y": -1.500000 }, "alias": "G", "templateId": "G___Guanine" @@ -9475,7 +9475,7 @@ "id": "376", "seqid": 125, "position": { - "x": 249.000000, + "x": 373.500000, "y": -0.000000 }, "alias": "P", @@ -9486,7 +9486,7 @@ "id": "377", "seqid": 127, "position": { - "x": 252.000000, + "x": 378.000000, "y": -0.000000 }, "alias": "R", @@ -9497,8 +9497,8 @@ "id": "378", "seqid": 127, "position": { - "x": 252.000000, - "y": -1.000000 + "x": 378.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -9508,7 +9508,7 @@ "id": "379", "seqid": 126, "position": { - "x": 251.000000, + "x": 376.500000, "y": -0.000000 }, "alias": "P", diff --git a/api/tests/integration/tests/reaction/reactions/issue_1205.ket b/api/tests/integration/tests/reaction/reactions/issue_1205.ket index 7825e9628f..32618c95d0 100644 --- a/api/tests/integration/tests/reaction/reactions/issue_1205.ket +++ b/api/tests/integration/tests/reaction/reactions/issue_1205.ket @@ -19,12 +19,12 @@ "mode": "open-angle", "pos": [ { - "x": 5.730308, + "x": 3.230308, "y": 0.0, "z": 0.0 }, { - "x": 15.130307, + "x": 6.730308, "y": 0.0, "z": 0.0 } @@ -39,7 +39,7 @@ { "label": "C", "location": [ - 1.3, + 0.5, 0.499902, 0.0 ] @@ -47,7 +47,7 @@ { "label": "C", "location": [ - 3.030308, + 2.230308, 0.500402, 0.0 ] @@ -55,7 +55,7 @@ { "label": "C", "location": [ - 2.166803, + 1.366804, 1.000004, 0.0 ] @@ -63,7 +63,7 @@ { "label": "C", "location": [ - 3.030308, + 2.230308, -0.500503, 0.0 ] @@ -71,7 +71,7 @@ { "label": "C", "location": [ - 1.3, + 0.5, -0.505002, 0.0 ] @@ -79,7 +79,7 @@ { "label": "C", "location": [ - 2.169004, + 1.369004, -1.000004, 0.0 ] @@ -136,7 +136,7 @@ { "label": "C", "location": [ - 17.830307, + 7.730308, 0.499902, 0.0 ] @@ -144,7 +144,7 @@ { "label": "C", "location": [ - 19.560715, + 9.460715, 0.500402, 0.0 ] @@ -152,7 +152,7 @@ { "label": "C", "location": [ - 18.697111, + 8.597112, 1.000005, 0.0 ] @@ -160,7 +160,7 @@ { "label": "C", "location": [ - 19.560715, + 9.460715, -0.500502, 0.0 ] @@ -168,7 +168,7 @@ { "label": "C", "location": [ - 17.830307, + 7.730308, -0.505002, 0.0 ] @@ -176,7 +176,7 @@ { "label": "C", "location": [ - 18.699312, + 8.599313, -1.000005, 0.0 ] @@ -233,8 +233,8 @@ { "label": "Cl", "location": [ - 8.430308, - 1.9, + 4.230308, + 1.0, 0.0 ] } @@ -247,8 +247,8 @@ { "label": "N", "location": [ - 12.430308, - 1.9, + 5.730308, + 1.0, 0.0 ] } diff --git a/api/wasm/indigo-ketcher/test/dna_ref.ket b/api/wasm/indigo-ketcher/test/dna_ref.ket index 52fc03d534..32655925fa 100644 --- a/api/wasm/indigo-ketcher/test/dna_ref.ket +++ b/api/wasm/indigo-ketcher/test/dna_ref.ket @@ -1 +1 @@ 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\ No newline at end of file diff --git a/api/wasm/indigo-ketcher/test/helm_maxmgc.ket b/api/wasm/indigo-ketcher/test/helm_maxmgc.ket index d03f96c03e..0f786fb83e 100644 --- a/api/wasm/indigo-ketcher/test/helm_maxmgc.ket +++ b/api/wasm/indigo-ketcher/test/helm_maxmgc.ket @@ -1 +1 @@ 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\ No newline at end of file diff --git a/api/wasm/indigo-ketcher/test/test_dna_ref.ket b/api/wasm/indigo-ketcher/test/test_dna_ref.ket index 6a912ab3f1..b5d5d3055a 100644 --- a/api/wasm/indigo-ketcher/test/test_dna_ref.ket +++ b/api/wasm/indigo-ketcher/test/test_dna_ref.ket @@ -1 +1 @@ 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\ No newline at end of file diff --git a/api/wasm/indigo-ketcher/test/test_peptide_ref.ket b/api/wasm/indigo-ketcher/test/test_peptide_ref.ket index 02b6d50638..d4be90514e 100644 --- a/api/wasm/indigo-ketcher/test/test_peptide_ref.ket +++ b/api/wasm/indigo-ketcher/test/test_peptide_ref.ket @@ -1 +1 @@ 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\ No newline at end of file diff --git a/api/wasm/indigo-ketcher/test/test_rna_ref.ket b/api/wasm/indigo-ketcher/test/test_rna_ref.ket index ff928d4a26..e7c6e334ac 100644 --- a/api/wasm/indigo-ketcher/test/test_rna_ref.ket +++ b/api/wasm/indigo-ketcher/test/test_rna_ref.ket @@ -1 +1 @@ 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\":2,\"atoms\":[1,2]},{\"type\":1,\"atoms\":[6,2]},{\"type\":1,\"atoms\":[2,3]},{\"type\":2,\"atoms\":[3,4]},{\"type\":1,\"atoms\":[4,5]},{\"type\":1,\"atoms\":[6,7]},{\"type\":1,\"atoms\":[6,10]},{\"type\":2,\"atoms\":[7,8]}]},\"monomerTemplate-G___Guanine\":{\"type\":\"monomerTemplate\",\"id\":\"G___Guanine\",\"class\":\"Base\",\"classHELM\":\"RNA\",\"fullName\":\"Guanine\",\"alias\":\"G\",\"naturalAnalogShort\":\"G\",\"attachmentPoints\":[{\"attachmentAtom\":6,\"type\":\"left\",\"leavingGroup\":{\"atoms\":[11]}}],\"atoms\":[{\"label\":\"C\",\"location\":[1.035400,0.249800,0.000000]},{\"label\":\"C\",\"location\":[-0.079200,-0.754000,0.000000]},{\"label\":\"C\",\"location\":[-1.505700,-0.290600,0.000000]},{\"label\":\"N\",\"location\":[-1.817700,1.176600,0.000000]},{\"label\":\"C\",\"location\":[-0.703100,2.180400,0.000000]},{\"label\":\"N\",\"location\":[0.723500,1.717000,0.000000]},{\"label\":\"N\",\"location\":[-2.387100,-1.503400,0.000000]},{\"label\":\"C\",\"location\":[-1.505300,-2.716800,0.000000]},{\"label\":\"N\",\"location\":[-0.078700,-2.253200,0.000000]},{\"label\":\"O\",\"location\":[2.176800,-0.120900,0.000000]},{\"label\":\"N\",\"location\":[-0.952700,3.354200,0.000000]},{\"label\":\"H\",\"location\":[-3.587100,-1.503400,0.000000]}],\"bonds\":[{\"type\":2,\"atoms\":[0,9]},{\"type\":1,\"atoms\":[0,5]},{\"type\":1,\"atoms\":[0,1]},{\"type\":1,\"atoms\":[8,1]},{\"type\":2,\"atoms\":[1,2]},{\"type\":1,\"atoms\":[6,2]},{\"type\":1,\"atoms\":[2,3]},{\"type\":2,\"atoms\":[3,4]},{\"type\":1,\"atoms\":[4,5]},{\"type\":1,\"atoms\":[4,10]},{\"type\":1,\"atoms\":[6,7]},{\"type\":1,\"atoms\":[6,11]},{\"type\":2,\"atoms\":[7,8]}]}}","format":"ket","original_format":"unknown"} \ No newline at end of file diff --git a/core/indigo-core/layout/metalayout.h b/core/indigo-core/layout/metalayout.h index 884ffaa8e3..2daa33e295 100644 --- a/core/indigo-core/layout/metalayout.h +++ b/core/indigo-core/layout/metalayout.h @@ -257,7 +257,8 @@ namespace indigo struct LayoutOptions { // FIXME: The value is 1.6 instead of 1.0 due to backward compatibility, needs to be refactored - static constexpr float DEFAULT_BOND_LENGTH = 1.0f; // default length of inter-chemical bonds + static constexpr float DEFAULT_BOND_LENGTH = 1.0f; // default length of inter-chemical bonds + static constexpr float DEFAULT_MONOMER_BOND_LENGTH = 1.5f; // default length of inter-chemical bonds static constexpr float DEFAULT_PLUS_SIZE = DEFAULT_BOND_LENGTH / 2; static constexpr float DEFAULT_BOND_LENGTH_PX = 100.0f; // 100 pixel static constexpr float DEFAULT_FONT_SIZE_PX = DEFAULT_BOND_LENGTH_PX * 0.4f; diff --git a/core/indigo-core/layout/reaction_layout.h b/core/indigo-core/layout/reaction_layout.h index 627a7bed47..1759f405ce 100644 --- a/core/indigo-core/layout/reaction_layout.h +++ b/core/indigo-core/layout/reaction_layout.h @@ -37,6 +37,7 @@ namespace indigo { public: explicit ReactionLayout(BaseReaction& r, bool smart_layout = false); + explicit ReactionLayout(BaseReaction& r, bool smart_layout, const LayoutOptions& options); static constexpr float DEFAULT_HOR_INTERVAL_FACTOR = 1.4f; diff --git a/core/indigo-core/layout/src/reaction_layout.cpp b/core/indigo-core/layout/src/reaction_layout.cpp index 2420e0d3f5..780a14ce7e 100644 --- a/core/indigo-core/layout/src/reaction_layout.cpp +++ b/core/indigo-core/layout/src/reaction_layout.cpp @@ -162,7 +162,7 @@ void ReactionLayout::fixLayout() // if left side of product bb at left of right side of reactant bb - fix layout if (invalid_layout || arrow_len != default_arrow_size) { - ReactionLayout rl(_r, true); + ReactionLayout rl(_r, true, _options); rl.preserve_molecule_layout = true; rl.make(); } diff --git a/core/indigo-core/layout/src/sequence_layout.cpp b/core/indigo-core/layout/src/sequence_layout.cpp index 4a244ffc4f..83a90a8750 100644 --- a/core/indigo-core/layout/src/sequence_layout.cpp +++ b/core/indigo-core/layout/src/sequence_layout.cpp @@ -178,7 +178,7 @@ void SequenceLayout::calculateCoordinates(SequenceLayoutMap& layout_sequence) for (auto& col : row.second) { int x_int = col.first - base_col; - Vec3f v(LayoutOptions::DEFAULT_BOND_LENGTH * x_int, -LayoutOptions::DEFAULT_BOND_LENGTH * y_int, 0); + Vec3f v(LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * x_int, -LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * y_int, 0); _molecule.setAtomXyz(col.second, v); } } diff --git a/core/indigo-core/molecule/src/sequence_loader.cpp b/core/indigo-core/molecule/src/sequence_loader.cpp index cc47098707..b25dce5daf 100644 --- a/core/indigo-core/molecule/src/sequence_loader.cpp +++ b/core/indigo-core/molecule/src/sequence_loader.cpp @@ -257,7 +257,7 @@ bool SequenceLoader::addMonomer(BaseMolecule& mol, char ch, SeqType seq_type) void SequenceLoader::addAminoAcid(BaseMolecule& mol, char ch) { - Vec3f pos(_col * LayoutOptions::DEFAULT_BOND_LENGTH, -LayoutOptions::DEFAULT_BOND_LENGTH * _row, 0); + Vec3f pos(_col * LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, -LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * _row, 0); std::string aa(1, ch); int amino_idx = mol.asMolecule().addAtom(-1); mol.asMolecule().setTemplateAtom(amino_idx, monomerNameByAlias(kMonomerClassAA, aa).c_str()); @@ -297,7 +297,7 @@ void SequenceLoader::addMonomerConnection(KetDocument& document, std::size_t lef Vec3f SequenceLoader::getBackboneMonomerPosition() { - return Vec3f(_col * LayoutOptions::DEFAULT_BOND_LENGTH, -LayoutOptions::DEFAULT_BOND_LENGTH * _row, 0); + return Vec3f(_col * LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, -LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * _row, 0); } void SequenceLoader::addNucleotide(BaseMolecule& mol, std::string base, const std::string& sugar_alias, const std::string& phosphate_alias, @@ -314,7 +314,7 @@ void SequenceLoader::addNucleotide(BaseMolecule& mol, std::string base, const st if (base.size() > 0) { int nuc_base_idx = addTemplateAtom(mol, base.c_str(), kMonomerClassBASE, _seq_id); - Vec3f base_coord(pos.x, pos.y - LayoutOptions::DEFAULT_BOND_LENGTH, 0); + Vec3f base_coord(pos.x, pos.y - LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, 0); mol.asMolecule().setAtomXyz(nuc_base_idx, base_coord); // connect nucleobase to the sugar @@ -330,7 +330,7 @@ void SequenceLoader::addNucleotide(BaseMolecule& mol, std::string base, const st // add phosphate int phosphate_idx = addTemplateAtom(mol, phosphate_alias.c_str(), kMonomerClassPHOSPHATE, _seq_id - 1); - Vec3f phosphate_coord(pos.x - LayoutOptions::DEFAULT_BOND_LENGTH, pos.y, 0); + Vec3f phosphate_coord(pos.x - LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, pos.y, 0); mol.asMolecule().setAtomXyz(phosphate_idx, phosphate_coord); addTemplateBond(mol, _last_monomer_idx, phosphate_idx); // connect phosphate to the previous monomer @@ -342,7 +342,7 @@ void SequenceLoader::addNucleotide(BaseMolecule& mol, std::string base, const st // add phosphate int phosphate_idx = addTemplateAtom(mol, phosphate_alias.c_str(), kMonomerClassPHOSPHATE, _seq_id); - Vec3f phosphate_coord(pos.x + LayoutOptions::DEFAULT_BOND_LENGTH, pos.y, 0); + Vec3f phosphate_coord(pos.x + LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, pos.y, 0); mol.asMolecule().setAtomXyz(phosphate_idx, phosphate_coord); if (_last_monomer_idx >= 0) @@ -437,7 +437,7 @@ void SequenceLoader::addMonomer(KetDocument& document, const std::string& monome void SequenceLoader::addAminoAcid(KetDocument& document, const std::string& monomer, bool variant) { - Vec3f pos(_col * LayoutOptions::DEFAULT_BOND_LENGTH, -LayoutOptions::DEFAULT_BOND_LENGTH * _row, 0); + Vec3f pos(_col * LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, -LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * _row, 0); auto amino_idx = document.monomers().size(); auto& amino_acid = variant ? document.addVariantMonomer(monomer, _var_alias_to_id.at(monomer)) : document.addMonomer(monomer, _alias_to_id.at(monomer)); if (variant) @@ -474,7 +474,7 @@ void SequenceLoader::addNucleotide(KetDocument& document, const std::string& bas else base->setAttachmentPoints(document.templates().at(_alias_to_id.at(base_alias)).attachmentPoints()); base->setIntProp("seqid", _seq_id); - Vec3f base_coord(pos.x, pos.y - LayoutOptions::DEFAULT_BOND_LENGTH, 0); + Vec3f base_coord(pos.x, pos.y - LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, 0); base->setPosition(base_coord); // connect nucleobase to the sugar @@ -492,7 +492,7 @@ void SequenceLoader::addNucleotide(KetDocument& document, const std::string& bas auto& phosphate = document.addMonomer(phosphate_alias, _alias_to_id.at(phosphate_alias)); phosphate->setAttachmentPoints(document.templates().at(_alias_to_id.at(phosphate_alias)).attachmentPoints()); phosphate->setIntProp("seqid", _seq_id - 1); - Vec3f phosphate_coord(pos.x - LayoutOptions::DEFAULT_BOND_LENGTH, pos.y, 0); + Vec3f phosphate_coord(pos.x - LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, pos.y, 0); phosphate->setPosition(phosphate_coord); addMonomerConnection(document, _last_monomer_idx, phosphate_idx); // connect phosphate to the previous monomer @@ -506,7 +506,7 @@ void SequenceLoader::addNucleotide(KetDocument& document, const std::string& bas auto& phosphate = document.addMonomer(phosphate_alias, _alias_to_id.at(phosphate_alias)); phosphate->setAttachmentPoints(document.templates().at(_alias_to_id.at(phosphate_alias)).attachmentPoints()); phosphate->setIntProp("seqid", _seq_id); - Vec3f phosphate_coord(pos.x + LayoutOptions::DEFAULT_BOND_LENGTH, pos.y, 0); + Vec3f phosphate_coord(pos.x + LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, pos.y, 0); phosphate->setPosition(phosphate_coord); if (_last_monomer_idx >= 0) @@ -1702,7 +1702,7 @@ void SequenceLoader::loadHELM(KetDocument& document) else if (ch != '}') { monomer_idx++; - Vec3f pos(_col * LayoutOptions::DEFAULT_BOND_LENGTH, -LayoutOptions::DEFAULT_BOND_LENGTH * _row, 0); + Vec3f pos(_col * LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, -LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * _row, 0); _col++; if (simple_polymer_type == kHELMPolymerTypeUnknown) { @@ -1762,7 +1762,7 @@ void SequenceLoader::loadHELM(KetDocument& document) monomer_idx++; auto base_info = readHelmMonomer(document, MonomerClass::Base); ch = _scanner.lookNext(); - Vec3f base_pos(pos.x, pos.y - LayoutOptions::DEFAULT_BOND_LENGTH, 0); + Vec3f base_pos(pos.x, pos.y - LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, 0); auto base_idx = addKetMonomer(document, base_info, MonomerClass::Base, base_pos); cur_polymer_map->second[monomer_idx] = base_idx; if (monomer_idx > 1) @@ -1776,7 +1776,7 @@ void SequenceLoader::loadHELM(KetDocument& document) continue; auto phosphate_info = readHelmMonomer(document, MonomerClass::Phosphate); monomer_idx++; - Vec3f phosphate_pos(_col * LayoutOptions::DEFAULT_BOND_LENGTH, -LayoutOptions::DEFAULT_BOND_LENGTH * _row, 0); + Vec3f phosphate_pos(_col * LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH, -LayoutOptions::DEFAULT_MONOMER_BOND_LENGTH * _row, 0); _col++; auto phosphate_idx = addKetMonomer(document, phosphate_info, MonomerClass::Phosphate, phosphate_pos); cur_polymer_map->second[monomer_idx] = phosphate_idx; diff --git a/data/molecules/basic/idt_mixed_std.ket b/data/molecules/basic/idt_mixed_std.ket index b5772f2c54..617bb63fb3 100644 --- a/data/molecules/basic/idt_mixed_std.ket +++ b/data/molecules/basic/idt_mixed_std.ket @@ -188,7 +188,7 @@ "seqid": 0, "position": { "x": 0.000000, - "y": -1.000000 + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -198,7 +198,7 @@ "id": "2", "seqid": 0, "position": { - "x": 1.000000, + "x": 1.500000, "y": -0.000000 }, "alias": "P", @@ -209,7 +209,7 @@ "id": "3", "seqid": 1, "position": { - "x": 2.000000, + "x": 3.000000, "y": -0.000000 }, "alias": "dR", @@ -219,8 +219,8 @@ "type": "ambiguousMonomer", "id": "4", "position": { - "x": 2.000000, - "y": -1.000000 + "x": 3.000000, + "y": -1.500000 }, "seqid": 1, "alias": "R", @@ -231,7 +231,7 @@ "id": "5", "seqid": 1, "position": { - "x": 3.000000, + "x": 4.500000, "y": -0.000000 }, "alias": "P", @@ -242,7 +242,7 @@ "id": "6", "seqid": 2, "position": { - "x": 4.000000, + "x": 6.000000, "y": -0.000000 }, "alias": "dR", @@ -253,8 +253,8 @@ "id": "7", "seqid": 2, "position": { - "x": 4.000000, - "y": -1.000000 + "x": 6.000000, + "y": -1.500000 }, "alias": "A", "templateId": "A___Adenine" @@ -264,7 +264,7 @@ "id": "8", "seqid": 2, "position": { - "x": 5.000000, + "x": 7.500000, "y": -0.000000 }, "alias": "P", @@ -275,7 +275,7 @@ "id": "9", "seqid": 3, "position": { - "x": 6.000000, + "x": 9.000000, "y": -0.000000 }, "alias": "dR", @@ -285,8 +285,8 @@ "type": "ambiguousMonomer", "id": "10", "position": { - "x": 6.000000, - "y": -1.000000 + "x": 9.000000, + "y": -1.500000 }, "seqid": 3, "alias": "S", diff --git a/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket b/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket index 9fe5bc097b..57697487a3 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/dna_fasta_ref.ket @@ -1 +1 @@ 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diff --git a/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket b/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket index 85c80d6dfc..da1fc6bbf5 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/helm_ambiguous.ket @@ -1 +1 @@ -{"root":{"nodes":[{"$ref":"ambiguousMonomer-0"},{"$ref":"ambiguousMonomer-1"}],"templates":[{"$ref":"monomerTemplate-D___Aspartic acid"},{"$ref":"monomerTemplate-N___Asparagine"},{"$ref":"monomerTemplate-I___Isoleucine"},{"$ref":"ambiguousMonomerTemplate-Var0"},{"$ref":"ambiguousMonomerTemplate-Var1"}]},"ambiguousMonomer-0":{"type":"ambiguousMonomer","id":"0","position":{"x":0.000000,"y":-0.000000},"seqid":1,"alias":"Var0","templateId":"Var0"},"ambiguousMonomer-1":{"type":"ambiguousMonomer","id":"1","position":{"x":0.000000,"y":-1.000000},"seqid":2,"alias":"Var1","templateId":"Var1"},"monomerTemplate-D___Aspartic 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diff --git a/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket b/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket index 7bd21ef734..83605cee0d 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/rna_fasta_ref.ket @@ -1 +1 @@ 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\ No newline at end of file diff --git a/utils/indigo-service/backend/service/tests/api/ref/rna_ref.ket b/utils/indigo-service/backend/service/tests/api/ref/rna_ref.ket index e0d650e1ad..961f6ef674 100644 --- a/utils/indigo-service/backend/service/tests/api/ref/rna_ref.ket +++ b/utils/indigo-service/backend/service/tests/api/ref/rna_ref.ket @@ -1 +1 @@ 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