From c63edfc932db492adf0d512385a402e0bb6239c2 Mon Sep 17 00:00:00 2001
From: CedricTravelletti <cedrictravelletti@gmail.com>
Date: Mon, 15 Jan 2024 15:38:29 +0100
Subject: [PATCH] Removed ComponentArrays deps.

---
 src/atomsbase_interface.jl | 34 ----------------------------------
 1 file changed, 34 deletions(-)

diff --git a/src/atomsbase_interface.jl b/src/atomsbase_interface.jl
index 83b5e25..13c31d4 100644
--- a/src/atomsbase_interface.jl
+++ b/src/atomsbase_interface.jl
@@ -17,21 +17,6 @@ function update_positions(system, positions::AbstractVector{<:AbstractVector{<:U
     AbstractSystem(system; particles)
 end
 
-@doc raw"""
-Creates a new system based on ``system`` but with atoms positions and lattice 
-vectors updated to the ones provided.
-New generalized coordinates should be provided in a ComponentArray with 
-component `atoms` and `bounding_box`, containing new atomic positions 
-and lattice vectors respectively.
-
-"""
-function update_positions(system, positions::ComponentVector)
-    # Collect are needed with ComponentArrays to get concrete types.
-    particles = [Atom(atom; position) for (atom, position)
-                 in zip(system, collect.(positions.atoms))]
-    AbstractSystem(system; particles, bounding_box=collect.(positions.bounding_box))
-end
-
 @doc raw"""
 Creates a new system based on ``system`` where the non clamped positions are
 updated to the ones provided (in the order in which they appear in the system).
@@ -44,25 +29,6 @@ function update_not_clamped_positions(system, positions::AbstractVector{<:Unitfu
     update_positions(system, new_positions)
 end
 
-@doc raw"""
-Creates a new system based on ``system`` where the non clamped positions and 
-lattice vectors are updated to the ones provided.
-Note that the `atoms`component of `positions` should be a vector of 
-coordinates.
-
-"""
-function update_not_clamped_positions(system, positions::ComponentVector)
-    mask = not_clamped_mask(system)
-    new_positions = deepcopy(position(system))
-    atoms_positions = collect(positions.atoms)
-    new_positions[mask] = reinterpret(reshape, SVector{3, eltype(atoms_positions)},
-                                      reshape(atoms_positions, 3, :))
-    update_positions(system,
-                     ComponentVector(atoms=new_positions,
-                                     bounding_box=collect.(positions.bounding_box))
-                    )
-end
-
 @doc raw"""
 Returns a mask for selecting the not clamped atoms in the system.