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remove interlaced input
1 parent 4e04b20 commit 6454a06

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2 files changed

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-15
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2 files changed

+0
-15
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tools/quast/macros.xml

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@@ -44,7 +44,6 @@
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<option value="disabled">Disabled</option>
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<option value="single">Illumina single-end reads</option>
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<option value="paired_collection">Illumina paired-end reads in paired collection</option>
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<option value="paired_interlaced">Illumina interlaced paired-end reads</option>
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<option value="mate_paired">Illumina mate-pair reads</option>
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<option value="pacbio">Pacbio SMRT reads</option>
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<option value="nanopore">Nanopore reads</option>

tools/quast/quast.xml

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@@ -110,14 +110,6 @@ metaquast
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--${option}2 '${option}2-${identifier}.${read.reverse.ext}'
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#end for
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#end if
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#else if $mode.reads.reads_option == 'paired_interlaced'
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#if $mode.mode == 'individual'
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--pe12 '$mode.reads.input_1'
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#else
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#for $read in $mode.reads.input_1
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--pe12 '$read'
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#end for
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#end if
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#else if $mode.reads.reads_option == 'pacbio'
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#if $mode.mode == 'individual'
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--pacbio '$mode.reads.input_1'
@@ -270,9 +262,6 @@ metaquast
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<when value="paired_collection">
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<param name="input_1" type="data_collection" collection_type="paired" format="fastq,fastq.gz,fasta,fasta.gz" label="FASTQ/FASTA files" />
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</when>
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<when value="paired_interlaced">
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<param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" label="FASTQ/FASTA file" />
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</when>
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<when value="mate_paired">
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<param name="input_1" type="data_collection" collection_type="paired" format="fastq,fastq.gz,fasta,fasta.gz" label="FASTQ/FASTA files" />
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</when>
@@ -305,9 +294,6 @@ metaquast
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<when value="paired_collection">
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<param name="input_1" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz,fasta,fasta.gz" label="FASTQ/FASTA files" />
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</when>
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<when value="paired_interlaced">
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<param name="input_1" format="fastq,fastq.gz,fasta,fasta.gz" type="data" multiple="true" label="FASTQ/FASTA file" />
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</when>
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<when value="mate_paired">
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<param name="input_1" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz,fasta,fasta.gz" label="FASTQ/FASTA files" /> </when>
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<when value="pacbio">

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