@@ -110,14 +110,6 @@ metaquast
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--${option}2 '${option}2-${identifier}.${read.reverse.ext}'
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#end for
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#end if
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- #else if $mode.reads.reads_option == 'paired_interlaced'
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- #if $mode.mode == 'individual'
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- --pe12 '$mode.reads.input_1'
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- #else
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- #for $read in $mode.reads.input_1
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- --pe12 '$read'
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- #end for
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- #end if
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#else if $mode.reads.reads_option == 'pacbio'
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#if $mode.mode == 'individual'
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--pacbio '$mode.reads.input_1'
@@ -270,9 +262,6 @@ metaquast
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<when value =" paired_collection" >
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<param name =" input_1" type =" data_collection" collection_type =" paired" format =" fastq,fastq.gz,fasta,fasta.gz" label =" FASTQ/FASTA files" />
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</when >
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- <when value =" paired_interlaced" >
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- <param name =" input_1" format =" fastq,fastq.gz,fasta,fasta.gz" type =" data" label =" FASTQ/FASTA file" />
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- </when >
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<when value =" mate_paired" >
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<param name =" input_1" type =" data_collection" collection_type =" paired" format =" fastq,fastq.gz,fasta,fasta.gz" label =" FASTQ/FASTA files" />
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</when >
@@ -305,9 +294,6 @@ metaquast
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<when value =" paired_collection" >
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<param name =" input_1" type =" data_collection" collection_type =" list:paired" format =" fastq,fastq.gz,fasta,fasta.gz" label =" FASTQ/FASTA files" />
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</when >
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- <when value =" paired_interlaced" >
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- <param name =" input_1" format =" fastq,fastq.gz,fasta,fasta.gz" type =" data" multiple =" true" label =" FASTQ/FASTA file" />
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- </when >
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<when value =" mate_paired" >
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<param name =" input_1" type =" data_collection" collection_type =" list:paired" format =" fastq,fastq.gz,fasta,fasta.gz" label =" FASTQ/FASTA files" /> </when >
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<when value =" pacbio" >
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