example-params.rdpc-dev.json

{
	"first_retry_wait_time": 5,
  "max_retries": 5,
	"alignedSeqQC": {
		"mem": 10,
		"cpus": 4
	},
	"ref_genome_fa": "/nfs-dev-1-vol-dev-2/reference/GRCh38_hla_decoy_ebv/GRCh38_hla_decoy_ebv.fa",
	"aligned-seq-QC": {
		"mem": 10,
		"cpus": 4
	},
	"uploadAlignment": {
		"score_mem": 10,
		"song_mem": 2,
		"score_cpus": 4,
		"song_cpus": 2
	},
	"cpus": 2,
	"payloadGenDnaSeqQc": {
		"mem": 2,
		"cpus": 2
	},
	"score_url": "https://score.rdpc-dev.cancercollaboratory.org",
	"gatkCollectOxogMetrics": {
		"mem": 6,
		"cpus": 3
	},
	"study_id": "TEST-INTL",
	"uploadQc": {
		"score_mem": 4,
		"song_mem": 2,
		"score_cpus": 2,
		"song_cpus": 2
	},
	"song_url": "https://song.rdpc-dev.cancercollaboratory.org",
	"analysis_id": "bfd5a1e4-aa41-4f17-95a1-e4aa412f1721",
	"download": {
		"score_mem": 10,
		"song_mem": 2,
		"score_cpus": 4,
		"score_url": "https://submission-score.rdpc-dev.cancercollaboratory.org",
		"song_url": "https://submission-song.rdpc-dev.cancercollaboratory.org",
		"song_cpus": 2
	},
	"mem": 4,
	"cleanup": true,
	"readGroupUBamQC": {
		"mem": 6,
		"cpus": 3
	},
	"tempdir": "/icgc-argo-scratch",
	"bwaMemAligner": {
		"mem": 18,
		"cpus": 6
	},
	"seqDataToLaneBam": {
		"mem": 12,
		"cpus": 4
	},
	"bamMergeSortMarkdup": {
		"mem": 18,
		"cpus": 4
	},
	"read-group-UBam-QC": {
		"mem": 6,
		"cpus": 3
	},
	"payloadGenDnaAlignment": {
		"mem": 4,
		"cpus": 2
	}
}