.travis.yml

sudo: false

language: cpp

matrix:
  include :
    - os: linux
      compiler: gcc-4.9
      addons:
        apt:
          sources: ['ubuntu-toolchain-r-test', 'george-edison55-precise-backports']
          packages: ['g++-4.9', 'cmake', 'cmake-data', 'zlib1g-dev', 'libbz2-dev', 'libboost-dev']
      install: export CXX="g++-4.9" CC="gcc-4.9"

#currently too slow on osx
#    - os: osx
#      compiler: clang-3.6
#      before_install:
#        - sudo brew update
#        - sudo brew tap homebrew/versions
#        - sudo brew install llvm36
#      install: ['export CXX="clang++-3.6" CC="clang-3.6"' ]

#    - os: linux
#      compiler: clang-3.8
#      addons:
#        apt:
#          sources: ['ubuntu-toolchain-r-test', 'george-edison55-precise-backports' , 'llvm-toolchain-precise-3.8']
#          packages: ['g++-4.9', 'cmake', 'cmake-data', 'zlib1g-dev', 'libbz2-dev', 'libboost-dev']
#      install: export CXX="clang++-3.8" CC="clang-3.8"

before_script:
 - git clone https://github.com/seqan/seqan.git seqan --branch seqan-v2.3.2
 #- git clone https://github.com/martinjvickers/KAST.git

script:
 - cmake ../KAST -DCMAKE_MODULE_PATH=./seqan/util/cmake -DSEQAN_INCLUDE_PATH=./seqan/include -DCMAKE_CXX_FLAGS=-std=c++14 -DCMAKE_BUILD_TYPE=Release
 - make -j2
 - ./kast_tests
 - ./app_test.sh
 #- ./kast -r example_data/seq1.fa -q example_data/yeast.fasta -k 3 -c 2
 #- ./unit_tests
 #- ./kast -q example_data/seq1.fa -r example_data/seq2.fa -o meh -k 5 --mask 10011 --mask 01101  -t d2s