Skip to content

Commit 8932eb7

Browse files
pditommasopditommaso
committed
Bumped license to Apache 2.0 #788 
1 parent c71e5c9 commit 8932eb7

File tree

754 files changed

+8275
-13443
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

754 files changed

+8275
-13443
lines changed

‎COPYING

+174-674
Large diffs are not rendered by default.

‎Makefile

+10-14
Original file line numberDiff line numberDiff line change
@@ -1,21 +1,17 @@
11
#
2-
# Copyright (c) 2013-2015, Centre for Genomic Regulation (CRG).
3-
# Copyright (c) 2013-2015, Paolo Di Tommaso and the respective authors.
2+
# Copyright 2013-2018, Centre for Genomic Regulation (CRG)
43
#
5-
# This file is part of Nextflow.
4+
# Licensed under the Apache License, Version 2.0 (the "License");
5+
# you may not use this file except in compliance with the License.
6+
# You may obtain a copy of the License at
67
#
7-
# Nextflow is free software: you can redistribute it and/or modify
8-
# it under the terms of the GNU General Public License as published by
9-
# the Free Software Foundation, either version 3 of the License, or
10-
# (at your option) any later version.
8+
# http://www.apache.org/licenses/LICENSE-2.0
119
#
12-
# Nextflow is distributed in the hope that it will be useful,
13-
# but WITHOUT ANY WARRANTY; without even the implied warranty of
14-
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15-
# GNU General Public License for more details.
16-
#
17-
# You should have received a copy of the GNU General Public License
18-
# along with Nextflow. If not, see <http://www.gnu.org/licenses/>.
10+
# Unless required by applicable law or agreed to in writing, software
11+
# distributed under the License is distributed on an "AS IS" BASIS,
12+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13+
# See the License for the specific language governing permissions and
14+
# limitations under the License.
1915

2016

2117
#

‎NOTICE

+131
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,131 @@
1+
NEXTFLOW
2+
3+
Copyright 2013-2018, Centre for Genomic Regulation (CRG)
4+
5+
6+
This software includes source code and libraries developed by:
7+
8+
Lorenz Gerber
9+
Licensed under Apache License, Version 2.0
10+
11+
SciLifeLab
12+
Licensed under Apache License, Version 2.0
13+
14+
Synthetic Genomics
15+
Licensed under Apache License, Version 2.0
16+
17+
University of Tübingen, Quantitative Biology Center (QBiC)
18+
Licensed under Apache License, Version 2.0
19+
20+
Apache Commons Lang
21+
Copyright Apache Software Foundation
22+
Licensed under Apache License, Version 2.0
23+
24+
Apache Commons Codec
25+
Copyright Apache Software Foundation
26+
Licensed under Apache License, Version 2.0
27+
28+
Apache Http Components
29+
Copyright Apache Software Foundation
30+
Licensed under Apache License, Version 2.0
31+
32+
Apache Groovy
33+
Copyright 2003-2018 Apache Software Foundation
34+
Licensed under Apache License, Version 2.0
35+
36+
Apache Ignite
37+
Copyright 2018 The Apache Software Foundation
38+
Licensed under Apache License, Version 2.0
39+
40+
AWS SDK for Java
41+
Copyright 2010-2014 Amazon.com, Inc. or its affiliates
42+
Licensed under Apache License, Version 2.0
43+
44+
Gpars
45+
Copyright (c) 2008-2011, The Gpars authors
46+
Licensed under the Apache License, Version 2.0
47+
48+
Grengine
49+
https://gitlab.com/jexler/grengine
50+
Copyright (c) 2014-now, Alain Stalder
51+
Licensed under the Apache License, Version 2.0
52+
53+
Gson
54+
https://github.com/google/gson
55+
Copyright 2008 Google Inc.
56+
Licensed under the Apache License, Version 2.0
57+
58+
Guava
59+
https://github.com/google/guava
60+
Copyright 2008 The Guava Authors
61+
Licensed under Apache License, Version 2.0
62+
63+
JGit
64+
Copyright JGit authors
65+
Licensed under the EPL v1.0 license
66+
67+
Javaewah
68+
https://github.com/lemire/javaewah
69+
Copyright 2009-2016, Daniel Lemire, Cliff Moon, David McIntosh, Robert Becho, Google Inc., Veronika Zenz, Owen Kaser, Gregory Ssi-Yan-Kai, Rory Graves
70+
Licensed under Apache License, Version 2.0
71+
72+
Jackson
73+
https://github.com/FasterXML/jackson-core
74+
https://github.com/FasterXML/jackson-annotations
75+
https://github.com/FasterXML/jackson-databind
76+
Copyright The Jackson authors
77+
Licensed under Apache License, Version 2.0
78+
79+
JCommander
80+
Copyright (c) 2010 Cedric Beust
81+
Licensed under Apache License, Version 2.0
82+
83+
Jsch
84+
http://www.jcraft.com/jsch/
85+
Copyright (c) 2002-2015 Atsuhiko Yamanaka, JCraft, Inc
86+
Licensed under BSD style license
87+
88+
Jsoup
89+
https://github.com/jhy/jsoup
90+
Copyright 2009-2018 Jonathan Hedley
91+
Licensed under the MIT license
92+
93+
Kryo
94+
Copyright (c) 2008-2018, Nathan Sweet
95+
Licensed under BSD 3-Clause license
96+
97+
Kryo serializers
98+
https://github.com/magro/kryo-serializers
99+
Copyright 2010 Martin Grotzke
100+
Licensed under Apache License, Version 2.0
101+
102+
Leveldb, https://github.com/dain/leveldb
103+
Copyright 2011 Dain Sundstrom dain@iq80.com
104+
Copyright 2011 FuseSource Corp. http://fusesource.com
105+
Licensed under Apache License, Version 2.0
106+
107+
Logback
108+
Copyright 1999-2017, QOS.ch
109+
Licensed under the EPL v1.0 license
110+
111+
Objenesis
112+
https://github.com/easymock/objenesis
113+
Copyright 2006-2018 the original author or authors
114+
Licensed under Apache License, Version 2.0
115+
116+
Okhttp
117+
Copyright 2013-2016 Square, Inc.
118+
Licensed under Apache License, Version 2.0
119+
120+
SLF4J
121+
Copyright 2004-2018 QOS.ch
122+
Licensed under the MIT license
123+
124+
Snakeyaml
125+
Copyright 2008, http://www.snakeyaml.org
126+
Licensed under Apache License, Version 2.0
127+
128+
129+
130+
Nextflow is a registered trademark of Centre for Genomic Regulation, Spain (CRG).
131+
See the trademark policy for details https://github.com/nextflow-io/trademark

‎README.md

+9-5
Original file line numberDiff line numberDiff line change
@@ -306,13 +306,17 @@ Documentation
306306

307307
Nextflow documentation is available at this link http://docs.nextflow.io
308308

309+
Contributing
310+
------------
311+
312+
Project contribution are more than welcome. See the [CONTRIBUTING](CONTRIBUTING.md) file for details.
313+
309314
Community
310315
----------
311316

312-
You can post questions, or report problems by using the Nextflow Google group available
313-
at this link https://groups.google.com/forum/#!forum/nextflow
317+
You can post questions, or report problems by using the Nextflow [discussion forum](https://groups.google.com/forum/#!forum/nextflow)
318+
or the [Nextflow channel on Gitter](https://gitter.im/nextflow-io/nextflow).
314319

315-
[![Gitter](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/nextflow-io/nextflow?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
316320

317321
Build servers
318322
--------------
@@ -323,7 +327,7 @@ Build servers
323327
License
324328
-------
325329

326-
The *Nextflow* framework is released under the GNU GPLv3 License.
330+
The *Nextflow* framework is released under the Apache 2.0 license.
327331

328332
Citations
329333
----------
@@ -336,7 +340,7 @@ Credits
336340
-------
337341

338342
Nextflow is built on two great pieces of open source software, namely <a href='http://groovy-lang.org' target='_blank'>Groovy</a>
339-
and <a href='http://www.gpars.org/' target='_blank'>Gpars</a>
343+
and <a href='http://www.gpars.org/' target='_blank'>Gpars</a>.
340344

341345
YourKit is kindly supporting this open source project with its full-featured Java Profiler.
342346
Read more http://www.yourkit.com

‎build.gradle

+12-16
Original file line numberDiff line numberDiff line change
@@ -1,21 +1,17 @@
11
/*
2-
* Copyright (c) 2013-2018, Centre for Genomic Regulation (CRG).
3-
* Copyright (c) 2013-2018, Paolo Di Tommaso and the respective authors.
2+
* Copyright 2013-2018, Centre for Genomic Regulation (CRG)
43
*
5-
* This file is part of 'Nextflow'.
4+
* Licensed under the Apache License, Version 2.0 (the "License");
5+
* you may not use this file except in compliance with the License.
6+
* You may obtain a copy of the License at
67
*
7-
* Nextflow is free software: you can redistribute it and/or modify
8-
* it under the terms of the GNU General Public License as published by
9-
* the Free Software Foundation, either version 3 of the License, or
10-
* (at your option) any later version.
8+
* http://www.apache.org/licenses/LICENSE-2.0
119
*
12-
* Nextflow is distributed in the hope that it will be useful,
13-
* but WITHOUT ANY WARRANTY; without even the implied warranty of
14-
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15-
* GNU General Public License for more details.
16-
*
17-
* You should have received a copy of the GNU General Public License
18-
* along with Nextflow. If not, see <http://www.gnu.org/licenses/>.
10+
* Unless required by applicable law or agreed to in writing, software
11+
* distributed under the License is distributed on an "AS IS" BASIS,
12+
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13+
* See the License for the specific language governing permissions and
14+
* limitations under the License.
1915
*/
2016

2117
buildscript {
@@ -689,8 +685,8 @@ configure(deployable) {
689685

690686
licenses {
691687
license {
692-
name 'GPLv3'
693-
url 'http://www.gnu.org/licenses/gpl-3.0.txt'
688+
name 'Apache 2.0'
689+
url 'http://www.apache.org/licenses/LICENSE-2.0.txt'
694690
}
695691
}
696692

‎cloud/README.md

-3
This file was deleted.

‎cloud/cloud-boot.sh

-92
This file was deleted.

0 commit comments

Comments
 (0)