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When trying to execute the workflow in local / dev mode (i.e. with /path/to/nextflow/launch.sh run /path/to/demo/main.nf) the script fails with:
A workflow named 'UTILS_NFSCHEMA_PLUGIN' is already defined or included in script: /path/to/demo/subworkflows/local/utils_nfcore_demo_pipeline/main.nf
-- Check script '/path/to/demo/subworkflows/local/utils_nfcore_demo_pipeline/main.nf' at line: 11 or see '.nextflow.log' file for more details
I found that the cause of this are the input statements
Description of the bug
When trying to execute the workflow in local / dev mode (i.e. with
/path/to/nextflow/launch.sh run /path/to/demo/main.nf
) the script fails with:I found that the cause of this are the input statements
demo/workflows/demo.nf
Line 12 in 04060b4
and
demo/subworkflows/local/utils_nfcore_demo_pipeline/main.nf
Lines 11 to 19 in 04060b4
If I remove one of them, the error is gone. But so are the needed methods (of course).
Command used and terminal output
Relevant files
.nextflow.log
System information
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