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**Data backup**
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Long story short. **Make a backup for your data, codes, and drafts.**
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In Mizumoto Lab, all the data, code, and drafts must be stored in Box Drive. Auburn University provides the [access](https://auburn.box.com). All these data for every single project should be stored in a single folder (also managed using GitHub), which has a minimum structure of
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In Mizumoto Lab, all the data, code, and drafts must be stored in either OneDrive or Box Drive (see [Data management practices]). Auburn University provides the [access](https://auburn.box.com). All these data for every single project should be stored in a single folder (also managed using GitHub), which has a minimum structure of
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<meta name="author" content="Nobuaki Mizumoto" />
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<meta name="date" content="2024-08-12" />
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<meta name="date" content="2024-09-06" />
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<li class="chapter" data-level="5.3.1" data-path="technologies.html"><a href="technologies.html#lab-pcs"><i class="fa fa-check"></i><b>5.3.1</b> Lab PCs</a></li>
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<li class="chapter" data-level="5.3.2" data-path="technologies.html"><a href="technologies.html#raspberry-pi"><i class="fa fa-check"></i><b>5.3.2</b> Raspberry Pi</a></li>
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</ul></li>
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<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-managements"><i class="fa fa-check"></i><b>5.4</b> Data managements</a>
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<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-management-practices"><i class="fa fa-check"></i><b>5.4</b> Data management practices</a>
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<ul>
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<li class="chapter" data-level="5.4.1" data-path="technologies.html"><a href="technologies.html#naming-files"><i class="fa fa-check"></i><b>5.4.1</b> Naming files</a></li>
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<li class="chapter" data-level="5.4.2" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.4.2</b> Box</a></li>
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<li class="chapter" data-level="5.4.3" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.3</b> HDDs</a></li>
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<li class="chapter" data-level="5.4.2" data-path="technologies.html"><a href="technologies.html#onedrive"><i class="fa fa-check"></i><b>5.4.2</b> OneDrive</a></li>
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<li class="chapter" data-level="5.4.3" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.4.3</b> Box</a></li>
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<li class="chapter" data-level="5.4.4" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.4.4</b> Git and Github</a></li>
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<li class="chapter" data-level="5.4.5" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.5</b> HDDs</a></li>
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</ul></li>
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<li class="chapter" data-level="5.5" data-path="technologies.html"><a href="technologies.html#software"><i class="fa fa-check"></i><b>5.5</b> Software</a>
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<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.5.1</b> Git and Github</a></li>
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<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.2</b> R and RStudio</a></li>
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<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.3</b> Python</a></li>
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<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#use-python-in-rstudio"><i class="fa fa-check"></i><b>5.5.4</b> Use Python in Rstudio</a></li>
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<li class="chapter" data-level="5.5.5" data-path="technologies.html"><a href="technologies.html#video-edit"><i class="fa fa-check"></i><b>5.5.5</b> Video edit</a></li>
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<li class="chapter" data-level="5.5.6" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.5.6</b> Tracking software</a></li>
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<li class="chapter" data-level="5.5.7" data-path="technologies.html"><a href="technologies.html#opencv"><i class="fa fa-check"></i><b>5.5.7</b> OpenCV</a></li>
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<li class="chapter" data-level="5.5.8" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.5.8</b> VPN</a></li>
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<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.1</b> R and RStudio</a></li>
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<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.2</b> Python</a></li>
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<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#ffmpeg-video-edits"><i class="fa fa-check"></i><b>5.5.3</b> FFmpeg (Video edits)</a></li>
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<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.5.4</b> Tracking software</a></li>
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<li class="chapter" data-level="5.5.5" data-path="technologies.html"><a href="technologies.html#opencv"><i class="fa fa-check"></i><b>5.5.5</b> OpenCV</a></li>
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<li class="chapter" data-level="5.5.6" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.5.6</b> VPN</a></li>
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</ul></li>
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<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#writing"><i class="fa fa-check"></i><b>5.6</b> Writing</a></li>
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<li class="chapter" data-level="5.7" data-path="technologies.html"><a href="technologies.html#notes-1"><i class="fa fa-check"></i><b>5.7</b> Notes</a>
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<ul>
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<li class="chapter" data-level="5.7.1" data-path="technologies.html"><a href="technologies.html#what-is-path"><i class="fa fa-check"></i><b>5.7.1</b> What is PATH?</a></li>
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</ul></li>
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<li class="chapter" data-level="6" data-path="opporunities.html"><a href="opporunities.html"><i class="fa fa-check"></i><b>6</b> Opporunities</a>
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<ul>
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<li class="chapter" data-level="5.1" data-path="technologies.html"><a href="technologies.html#lab"><i class="fa fa-check"></i><b>5.1</b> Lab</a>
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<li class="chapter" data-level="5.1.1" data-path="technologies.html"><a href="technologies.html#lab-waste"><i class="fa fa-check"></i><b>5.1.1</b> Lab waste</a></li>
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<li class="chapter" data-level="5.1.1" data-path="technologies.html"><a href="technologies.html#termite-handling"><i class="fa fa-check"></i><b>5.1.1</b> Termite handling</a></li>
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<li class="chapter" data-level="5.1.2" data-path="technologies.html"><a href="technologies.html#lab-waste"><i class="fa fa-check"></i><b>5.1.2</b> Lab waste</a></li>
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<li class="chapter" data-level="5.2" data-path="technologies.html"><a href="technologies.html#computer-setting"><i class="fa fa-check"></i><b>5.2</b> Computer setting</a></li>
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<li class="chapter" data-level="5.3" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.3</b> Box</a></li>
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<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#github"><i class="fa fa-check"></i><b>5.4</b> GitHub</a></li>
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<li class="chapter" data-level="5.5" data-path="technologies.html"><a href="technologies.html#outlook-calendar"><i class="fa fa-check"></i><b>5.5</b> Outlook Calendar</a></li>
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<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#email"><i class="fa fa-check"></i><b>5.6</b> Email</a></li>
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<li class="chapter" data-level="5.7" data-path="technologies.html"><a href="technologies.html#r"><i class="fa fa-check"></i><b>5.7</b> R</a></li>
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<li class="chapter" data-level="5.8" data-path="technologies.html"><a href="technologies.html#rstudio"><i class="fa fa-check"></i><b>5.8</b> RStudio</a>
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<li class="chapter" data-level="5.2" data-path="technologies.html"><a href="technologies.html#field"><i class="fa fa-check"></i><b>5.2</b> Field</a></li>
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<li class="chapter" data-level="5.3" data-path="technologies.html"><a href="technologies.html#hardware"><i class="fa fa-check"></i><b>5.3</b> Hardware</a>
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<li class="chapter" data-level="5.8.1" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.8.1</b> Python</a></li>
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<li class="chapter" data-level="5.3.1" data-path="technologies.html"><a href="technologies.html#lab-pcs"><i class="fa fa-check"></i><b>5.3.1</b> Lab PCs</a></li>
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<li class="chapter" data-level="5.3.2" data-path="technologies.html"><a href="technologies.html#raspberry-pi"><i class="fa fa-check"></i><b>5.3.2</b> Raspberry Pi</a></li>
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</ul></li>
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<li class="chapter" data-level="5.9" data-path="technologies.html"><a href="technologies.html#video-analysis"><i class="fa fa-check"></i><b>5.9</b> Video analysis</a>
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<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-management-1"><i class="fa fa-check"></i><b>5.4</b> Data management</a>
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<ul>
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<li class="chapter" data-level="5.9.1" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.9.1</b> Tracking software</a></li>
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<li class="chapter" data-level="5.4.1" data-path="technologies.html"><a href="technologies.html#naming-files"><i class="fa fa-check"></i><b>5.4.1</b> Naming files</a></li>
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<li class="chapter" data-level="5.4.2" data-path="technologies.html"><a href="technologies.html#onedrive"><i class="fa fa-check"></i><b>5.4.2</b> OneDrive</a></li>
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<li class="chapter" data-level="5.4.3" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.4.3</b> Box</a></li>
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<li class="chapter" data-level="5.4.4" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.4</b> HDDs</a></li>
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</ul></li>
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<li class="chapter" data-level="5.10" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.10</b> VPN</a></li>
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<li class="chapter" data-level="5.11" data-path="technologies.html"><a href="technologies.html#writing-information"><i class="fa fa-check"></i><b>5.11</b> Writing information</a></li>
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<li class="chapter" data-level="5.5" data-path="technologies.html"><a href="technologies.html#software"><i class="fa fa-check"></i><b>5.5</b> Software</a>
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<ul>
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<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.5.1</b> Git and Github</a></li>
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<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.2</b> R and RStudio</a></li>
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<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.3</b> Python</a></li>
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<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#use-python-in-rstudio"><i class="fa fa-check"></i><b>5.5.4</b> Use Python in Rstudio</a></li>
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<li class="chapter" data-level="5.5.5" data-path="technologies.html"><a href="technologies.html#video-edit"><i class="fa fa-check"></i><b>5.5.5</b> Video edit</a></li>
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<li class="chapter" data-level="5.5.6" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.5.6</b> Tracking software</a></li>
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<li class="chapter" data-level="5.5.7" data-path="technologies.html"><a href="technologies.html#opencv"><i class="fa fa-check"></i><b>5.5.7</b> OpenCV</a></li>
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<li class="chapter" data-level="5.5.8" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.5.8</b> VPN</a></li>
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</ul></li>
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<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#writing"><i class="fa fa-check"></i><b>5.6</b> Writing</a></li>
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</ul></li>
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<li class="chapter" data-level="6" data-path="opporunities.html"><a href="opporunities.html"><i class="fa fa-check"></i><b>6</b> Opporunities</a>
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<h1 class="title">Mizumoto Lab Manual</h1>
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<p class="author"><em>Nobuaki Mizumoto</em></p>
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<p class="date"><em>2024-07-18</em></p>
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<p class="date"><em>2024-09-06</em></p>
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<div id="mizumoto-lab-manual" class="section level1 hasAnchor" number="1">
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<h1><span class="header-section-number">Chapter 1</span> Mizumoto Lab Manual<a href="index.html#mizumoto-lab-manual" class="anchor-section" aria-label="Anchor link to header"></a></h1>
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<h2><span class="header-section-number">1.2</span> Mission Statement<a href="index.html#mission-statement" class="anchor-section" aria-label="Anchor link to header"></a></h2>
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<p>Mizumoto lab aims to trace the evolution of collective behavior in termites. We will identify behavioral rules underlying termite communications and relate behavioral diversity with social structures and pest status. We believe behavioral findings come from a new perspective and a small trick of experiments, not solely from advanced technology. Thus, we strive to create a constructive environment, turning daily discussions into exciting research ideas.</p>
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<p>Also, one of our missions is to provide a comprehensive understanding of termite diversity. Knowledge of termites is highly biased as a destructive structural pest. However, among &gt; 3,000 termite species in this world, only a handful of species are counted as destructive pests. We want to reveal why some termites are pests and others are not. We will contribute to society by sharing a comprehensive picture of our tiny creatures.</p>
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<p>Mizumoto lab aims to trace the evolution of collective behavior in termites. We will identify behavioral rules underlying termite communications and relate behavioral diversity with social structures and pest status. We believe behavioral findings come from a new perspective and a small set of carefully designed experiments, not solely from advanced technology. Thus, we strive to create a constructive environment, turning daily discussions into exciting research ideas.</p>
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<p>Also, one of our missions is to provide a comprehensive understanding of termite diversity. Knowledge of termites is highly biased towards destructive structural pest species. However, among &gt; 3,000 termite species in this world, only a handful are considered as destructive pests. We want to reveal why some termites are pests and others are not. We will contribute to society by sharing a comprehensive picture of our tiny creatures.</p>
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<hr />
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</div>
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<div id="notes" class="section level2 hasAnchor" number="1.3">
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<h2><span class="header-section-number">1.3</span> Notes<a href="index.html#notes" class="anchor-section" aria-label="Anchor link to header"></a></h2>
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<p>Our lab manual is designed to be always under construction. Please input your feedback. I strive to create a better environment for all lab members, which should vary dynamically according to time.</p>
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<p>Our lab manual is designed to be continually under construction. Please input your feedback. I strive to create a better environment for all lab members, which should vary dynamically according to time.</p>
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<p>If you are new to the lab, please read and understand these lab policies (especially sections 1-4), and then submit the form (<a href="https://github.com/nobuaki-mzmt/mizumoto-lab-manual/blob/main/sign_form.pdf">pdf</a>, <a href="https://github.com/nobuaki-mzmt/mizumoto-lab-manual/blob/main/sign_form.docs">docs</a>) to NM.</p>
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<p>This lab manual was inspired by several others and borrowed heavily from them (e.g.,
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<a href="https://github.com/bablab/lab_manual">bablab</a>, <a href="https://github.com/marekborowiec/lab-wiki.wiki.git">marekborowiec-lab</a>,

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