|
6 | 6 | <meta http-equiv="X-UA-Compatible" content="IE=edge" /> |
7 | 7 | <title>Chapter 4 General Policies | Mizumoto Lab Manual</title> |
8 | 8 | <meta name="description" content="This is the lab manual for the Mizumoto Lab at Auburn University." /> |
9 | | - <meta name="generator" content="bookdown 0.40 and GitBook 2.6.7" /> |
| 9 | + <meta name="generator" content="bookdown 0.41 and GitBook 2.6.7" /> |
10 | 10 |
|
11 | 11 | <meta property="og:title" content="Chapter 4 General Policies | Mizumoto Lab Manual" /> |
12 | 12 | <meta property="og:type" content="book" /> |
|
23 | 23 | <meta name="author" content="Nobuaki Mizumoto" /> |
24 | 24 |
|
25 | 25 |
|
26 | | -<meta name="date" content="2024-07-26" /> |
| 26 | +<meta name="date" content="2025-01-16" /> |
27 | 27 |
|
28 | 28 | <meta name="viewport" content="width=device-width, initial-scale=1" /> |
29 | 29 | <meta name="apple-mobile-web-app-capable" content="yes" /> |
|
113 | 113 | <li class="chapter" data-level="5.1.1" data-path="technologies.html"><a href="technologies.html#termite-handling"><i class="fa fa-check"></i><b>5.1.1</b> Termite handling</a></li> |
114 | 114 | <li class="chapter" data-level="5.1.2" data-path="technologies.html"><a href="technologies.html#lab-waste"><i class="fa fa-check"></i><b>5.1.2</b> Lab waste</a></li> |
115 | 115 | </ul></li> |
116 | | -<li class="chapter" data-level="5.2" data-path="technologies.html"><a href="technologies.html#field"><i class="fa fa-check"></i><b>5.2</b> Field</a></li> |
| 116 | +<li class="chapter" data-level="5.2" data-path="technologies.html"><a href="technologies.html#field"><i class="fa fa-check"></i><b>5.2</b> Field</a> |
| 117 | +<ul> |
| 118 | +<li class="chapter" data-level="5.2.1" data-path="technologies.html"><a href="technologies.html#gps-coordinates"><i class="fa fa-check"></i><b>5.2.1</b> GPS coordinates</a></li> |
| 119 | +</ul></li> |
117 | 120 | <li class="chapter" data-level="5.3" data-path="technologies.html"><a href="technologies.html#hardware"><i class="fa fa-check"></i><b>5.3</b> Hardware</a> |
118 | 121 | <ul> |
119 | 122 | <li class="chapter" data-level="5.3.1" data-path="technologies.html"><a href="technologies.html#lab-pcs"><i class="fa fa-check"></i><b>5.3.1</b> Lab PCs</a></li> |
120 | 123 | <li class="chapter" data-level="5.3.2" data-path="technologies.html"><a href="technologies.html#raspberry-pi"><i class="fa fa-check"></i><b>5.3.2</b> Raspberry Pi</a></li> |
121 | 124 | </ul></li> |
122 | | -<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-managements"><i class="fa fa-check"></i><b>5.4</b> Data managements</a> |
| 125 | +<li class="chapter" data-level="5.4" data-path="technologies.html"><a href="technologies.html#data-management-practices"><i class="fa fa-check"></i><b>5.4</b> Data management practices</a> |
123 | 126 | <ul> |
124 | 127 | <li class="chapter" data-level="5.4.1" data-path="technologies.html"><a href="technologies.html#naming-files"><i class="fa fa-check"></i><b>5.4.1</b> Naming files</a></li> |
125 | | -<li class="chapter" data-level="5.4.2" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.4.2</b> Box</a></li> |
126 | | -<li class="chapter" data-level="5.4.3" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.3</b> HDDs</a></li> |
| 128 | +<li class="chapter" data-level="5.4.2" data-path="technologies.html"><a href="technologies.html#onedrive"><i class="fa fa-check"></i><b>5.4.2</b> OneDrive</a></li> |
| 129 | +<li class="chapter" data-level="5.4.3" data-path="technologies.html"><a href="technologies.html#box"><i class="fa fa-check"></i><b>5.4.3</b> Box</a></li> |
| 130 | +<li class="chapter" data-level="5.4.4" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.4.4</b> Git and Github</a></li> |
| 131 | +<li class="chapter" data-level="5.4.5" data-path="technologies.html"><a href="technologies.html#hdds"><i class="fa fa-check"></i><b>5.4.5</b> HDDs</a></li> |
127 | 132 | </ul></li> |
128 | 133 | <li class="chapter" data-level="5.5" data-path="technologies.html"><a href="technologies.html#software"><i class="fa fa-check"></i><b>5.5</b> Software</a> |
129 | 134 | <ul> |
130 | | -<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#git-and-github"><i class="fa fa-check"></i><b>5.5.1</b> Git and Github</a></li> |
131 | | -<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.2</b> R and RStudio</a></li> |
132 | | -<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.3</b> Python</a></li> |
133 | | -<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#video-edit"><i class="fa fa-check"></i><b>5.5.4</b> Video edit</a></li> |
| 135 | +<li class="chapter" data-level="5.5.1" data-path="technologies.html"><a href="technologies.html#r-and-rstudio"><i class="fa fa-check"></i><b>5.5.1</b> R and RStudio</a></li> |
| 136 | +<li class="chapter" data-level="5.5.2" data-path="technologies.html"><a href="technologies.html#python"><i class="fa fa-check"></i><b>5.5.2</b> Python</a></li> |
| 137 | +<li class="chapter" data-level="5.5.3" data-path="technologies.html"><a href="technologies.html#use-python-in-rstudio"><i class="fa fa-check"></i><b>5.5.3</b> Use Python in Rstudio</a></li> |
| 138 | +<li class="chapter" data-level="5.5.4" data-path="technologies.html"><a href="technologies.html#ffmpeg-video-edits"><i class="fa fa-check"></i><b>5.5.4</b> FFmpeg (Video edits)</a></li> |
134 | 139 | <li class="chapter" data-level="5.5.5" data-path="technologies.html"><a href="technologies.html#tracking-software"><i class="fa fa-check"></i><b>5.5.5</b> Tracking software</a></li> |
135 | 140 | <li class="chapter" data-level="5.5.6" data-path="technologies.html"><a href="technologies.html#opencv"><i class="fa fa-check"></i><b>5.5.6</b> OpenCV</a></li> |
136 | 141 | <li class="chapter" data-level="5.5.7" data-path="technologies.html"><a href="technologies.html#vpn"><i class="fa fa-check"></i><b>5.5.7</b> VPN</a></li> |
| 142 | +<li class="chapter" data-level="5.5.8" data-path="technologies.html"><a href="technologies.html#zotero-literature-management"><i class="fa fa-check"></i><b>5.5.8</b> Zotero (literature management)</a></li> |
| 143 | +</ul></li> |
| 144 | +<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#smartphone"><i class="fa fa-check"></i><b>5.6</b> Smartphone</a> |
| 145 | +<ul> |
| 146 | +<li class="chapter" data-level="5.6.1" data-path="technologies.html"><a href="technologies.html#camera-app"><i class="fa fa-check"></i><b>5.6.1</b> Camera app</a></li> |
| 147 | +</ul></li> |
| 148 | +<li class="chapter" data-level="5.7" data-path="technologies.html"><a href="technologies.html#writing"><i class="fa fa-check"></i><b>5.7</b> Writing</a></li> |
| 149 | +<li class="chapter" data-level="5.8" data-path="technologies.html"><a href="technologies.html#supplies"><i class="fa fa-check"></i><b>5.8</b> Supplies</a></li> |
| 150 | +<li class="chapter" data-level="5.9" data-path="technologies.html"><a href="technologies.html#notes-1"><i class="fa fa-check"></i><b>5.9</b> Notes</a> |
| 151 | +<ul> |
| 152 | +<li class="chapter" data-level="5.9.1" data-path="technologies.html"><a href="technologies.html#what-is-path"><i class="fa fa-check"></i><b>5.9.1</b> What is PATH?</a></li> |
| 153 | +<li class="chapter" data-level="5.9.2" data-path="technologies.html"><a href="technologies.html#i-cannot-play-a-video-on-my-pc"><i class="fa fa-check"></i><b>5.9.2</b> I cannot play a video on my PC</a></li> |
137 | 154 | </ul></li> |
138 | | -<li class="chapter" data-level="5.6" data-path="technologies.html"><a href="technologies.html#writing"><i class="fa fa-check"></i><b>5.6</b> Writing</a></li> |
139 | 155 | </ul></li> |
140 | 156 | <li class="chapter" data-level="6" data-path="opporunities.html"><a href="opporunities.html"><i class="fa fa-check"></i><b>6</b> Opporunities</a> |
141 | 157 | <ul> |
@@ -224,17 +240,47 @@ <h2><span class="header-section-number">4.2</span> Lab meetings and seminars<a h |
224 | 240 | </ul></li> |
225 | 241 | </ul> |
226 | 242 | <ol start="2" style="list-style-type: decimal"> |
227 | | -<li><strong>Department seminar</strong></li> |
| 243 | +<li><strong>Lab meeting</strong></li> |
228 | 244 | </ol> |
229 | 245 | <ul> |
230 | | -<li>The Department of Entomology & Plant Pathology has a department seminar during semesters; you are expected to attend it. Ask a question even if it differs greatly from our field (mostly, they are!). Thinking about what to ask for a question is the most effective way to attend seminars.</li> |
| 246 | +<li>The goal of the lab meetings is to provide meaningful updates that directly contribute to the development of thesis or paper. Each meeting will focus on discussing a single figure, which could represent either results or concepts. This format ensures that updates are purposeful, and that feedback directly supports academic progress.</li> |
| 247 | +<li>Figure presentation |
| 248 | +<ul> |
| 249 | +<li>Presenter presents at least one figure that could be used as part of their thesis or paper.</li> |
| 250 | +<li>The figure can represent anything such as methods, results or concepts.</li> |
| 251 | +</ul></li> |
| 252 | +<li>Document preparation |
| 253 | +<ul> |
| 254 | +<li>Presenter will prepare a 1–2-page document to accompany the figure, which should include: |
| 255 | +<ul> |
| 256 | +<li>Background: Introduction information for the figure</li> |
| 257 | +<li>Methods: Explanation about the data collection</li> |
| 258 | +<li>Results: Explain the figure.</li> |
| 259 | +<li>Figure Legend: Detailed explanation of the figure</li> |
| 260 | +<li>So, this is very similar to our format of Daily journal club. Make sure prepare documents which can be directly used to paper/thesis. <strong>Do not prepare for the meeting. Meeting is the regular opportunity to make a progress on paper/thesis</strong>.</li> |
| 261 | +</ul></li> |
| 262 | +</ul></li> |
| 263 | +<li>Meeting Frequency & Duration |
| 264 | +<ul> |
| 265 | +<li>Each person presents <strong>every 4 weeks</strong>. (you can get ~ 10 figures for your thesis/paper)</li> |
| 266 | +<li>Each meeting lasts 30-60 min. We use the time of journal club on Friday.</li> |
| 267 | +</ul></li> |
| 268 | +<li>Pre-meeting preparation |
| 269 | +<ul> |
| 270 | +<li>Send the document and figure to the lab members by 11:59pm on the day before.</li> |
| 271 | +</ul></li> |
| 272 | +<li>Discussion format |
| 273 | +<ul> |
| 274 | +<li>Read the document in 5 minutes.</li> |
| 275 | +<li>Presenter explains the figure with context and relavance.</li> |
| 276 | +<li>Discuss figures and documents, focusing on constructive feedback for imporvements and next steps.</li> |
| 277 | +</ul></li> |
231 | 278 | </ul> |
232 | 279 | <ol start="3" style="list-style-type: decimal"> |
233 | | -<li><strong>Lab meeting</strong></li> |
| 280 | +<li><strong>Department seminar</strong></li> |
234 | 281 | </ol> |
235 | 282 | <ul> |
236 | | -<li>I am thinking of a lab meeting to present the progress. To discuss this later. |
237 | | -<!-- This should not be presentation based. Rather, write a paragraph introducing what you did, methods, and figures. --></li> |
| 283 | +<li>The Department of Entomology & Plant Pathology has a department seminar during semesters; you are expected to attend it. Ask a question even if it differs greatly from our field (mostly, they are!). Thinking about what to ask for a question is the most effective way to attend seminars.</li> |
238 | 284 | </ul> |
239 | 285 | <ol start="4" style="list-style-type: decimal"> |
240 | 286 | <li><strong>Shared Lab Meeting</strong></li> |
|
0 commit comments