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Update python 3.12 version
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doc/packages.md

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| runtime/java/openjdk8 | 1.8.442-06 | https://github.com/openjdk/jdk8u/tags
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| runtime/perl | 5.40.1 | https://www.cpan.org/src/README.html
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| runtime/python-311 | 3.11.11 | https://www.python.org/downloads/source/
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| runtime/python-312 | 3.12.8 | https://www.python.org/downloads/source/
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| runtime/python-312 | 3.12.9 | https://www.python.org/downloads/source/
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| runtime/python-313 | 3.13.2 | https://www.python.org/downloads/source/
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| security/sudo | 1.9.16p2 | https://www.sudo.ws/
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| service/network/chrony | 4.5 | https://download.tuxfamily.org/chrony/

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