Repositories list

• SpliceFamAlignMulti

  Public
  Performs multiple spliced alignments in a progressive way.

  C

  •1•2•0•0•Updated Nov 8, 2024Nov 8, 2024

• LSC-ncRNA

  Public
  Large Scale Classification of non-coding RNA

  C++

  •

  GNU General Public License v3.0

  •3•2•0•0•Updated Oct 28, 2024Oct 28, 2024

• SimSpliceEvol

  Public
  SimSpliceEvol: Alternative splicing-aware simulation of biological sequence evolution

  simulationevolutionalternative-splicing+ 4transcriptomicsgraphical-user-interfaceexon-intron-structuretranscript-phylogenies

  Python

  •2•3•0•0•Updated Jun 21, 2024Jun 21, 2024

• TranscriptOrthology

  Public
  Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach

  algorithmclusteringevolution+ 4computational-biologyalternative-splicingorthology-inferenceisoorthology

  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 18, 2024Feb 18, 2024

• TranscriptPhylogenies

  Public
  Inferring Transcript Phylogenies from Transcript Ortholog Clusters

  transcriptometranscript-evolutiontree-reconciliation+ 1orthoogy-and-paralogy-inference

  Parrot

  •

  MIT License

  •0•1•0•0•Updated Feb 18, 2024Feb 18, 2024

• G4Evolution

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023

• SpliceFamAlign

  Public
  Python

  •5•2•1•0•Updated Sep 23, 2022Sep 23, 2022

• G4Conservation

  Public
  prediction and annotation of G4 in diverse species

  Jupyter Notebook

  •0•0•0•0•Updated Oct 13, 2021Oct 13, 2021

• DoubleRecViz

  Public
  DoubleRecViz is a tool for visualizing and editing double reconciliations between phylogenetic trees at three levels: transcript, gene and species.

  Python

  •3•4•1•0•Updated Aug 20, 2020Aug 20, 2020

• SplicingHomologGeneTree

  Public
  0•0•0•0•Updated Jul 20, 2020Jul 20, 2020

• aliFreeFoldMulti

  Public
  C++

  •0•1•0•0•Updated May 27, 2020May 27, 2020

• G4HumanTranscriptome

  Public
  prediction and analyse of G4 in the human transcriptome

  HTML

  •0•2•0•0•Updated Apr 28, 2020Apr 28, 2020

• EXECT

  Public
  Java

  •1•0•0•0•Updated Mar 4, 2020Mar 4, 2020

• SpliceAlnViz

  Public
  Interactive alignment visualization tool

  Python

  •0•0•0•0•Updated Feb 27, 2019Feb 27, 2019

• Protein2GeneTree

  Public
  Python

  •0•0•0•0•Updated Jun 12, 2018Jun 12, 2018

• SuperProteinTree

  Public
  OpenEdge ABL

  •0•0•0•0•Updated May 7, 2018May 7, 2018

• alifreefold

  Public
  C++

  •1•0•0•0•Updated Mar 12, 2018Mar 12, 2018

• FsePSA

  Public
  Python

  •1•2•0•0•Updated Sep 19, 2016Sep 19, 2016