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    104 repositories

    • CE_locomotion

      Public
      Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
      C++
      •4•1•7•1•Updated Apr 10, 2025Apr 10, 2025

    • c302

      Public
      The c302 framework for generating multiscale network models of C. elegans
      simulationopenworm
      Python
      •23•118•8•2•Updated Apr 8, 2025Apr 8, 2025

    • OpenWorm

      Public
      Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
      simulationbiologyopenwormelegans
      Python
      •
      MIT License
      •215•2.8k•41•5•Updated Apr 8, 2025Apr 8, 2025

    • org.geppetto.frontend

      Public
      Geppetto Java frontend bundle
      Java
      •
      Other
      •25•29•2•4•Updated Apr 3, 2025Apr 3, 2025

    • geppetto-client

      Public
      The web client of a Geppetto application
      JavaScript
      •
      Other
      •2•5•70•27•Updated Mar 30, 2025Mar 30, 2025

    • org.geppetto.datasources

      Public
      Java
      •
      Other
      •2•2•0•5•Updated Mar 28, 2025Mar 28, 2025

    • openworm.ai

      Public
      Scripts related to use of LLMs and other AI technology in OpenWorm
      HTML
      •
      MIT License
      •0•1•2•0•Updated Mar 28, 2025Mar 28, 2025

    • org.geppetto.core

      Public
      Geppetto core bundle
      Java
      •
      Other
      •11•23•6•7•Updated Mar 28, 2025Mar 28, 2025

    • NicolettiEtAl2024_MN_IN

      Public
      C.elegans motor and interneurons (Nicoletti at al. 2024)
      Python
      •3•0•4•2•Updated Mar 25, 2025Mar 25, 2025

    • tracker-commons

      Public
      Compilation of information and code bases related to open-source trackers for C. elegans
      Scala
      •12•12•28•1•Updated Mar 20, 2025Mar 20, 2025

    • owmeta-core

      Public
      Core library for owmeta
      Python
      •
      MIT License
      •2•3•41•0•Updated Mar 18, 2025Mar 18, 2025

    • NicolettiEtAl2019_NeuronModels

      Public
      Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
      Jupyter Notebook
      •2•1•2•1•Updated Mar 10, 2025Mar 10, 2025

    • simulate

      Public
      Links to online simulations of the worm
      HTML
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • ConnectomeToolbox

      Public
      Information on published connectomics data related to C. elegans
      Python
      •4•2•3•1•Updated Mar 6, 2025Mar 6, 2025

    • wormpose

      Public
      WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • sibernetic

      Public
      This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
      C
      •
      Other
      •106•372•30•7•Updated Jan 27, 2025Jan 27, 2025

    • openworm.github.io

      Public
      OpenWorm main website
      HTML
      •36•26•14•0•Updated Dec 20, 2024Dec 20, 2024

    • hodgkin_huxley_tutorial

      Public
      A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
      Python
      •
      GNU Lesser General Public License v3.0
      •9•43•5•0•Updated Nov 5, 2024Nov 5, 2024

    • sibernetic_v3

      Public
      Cluster code
      C++
      •
      MIT License
      •0•1•0•0•Updated Sep 27, 2024Sep 27, 2024

    • owmeta

      Public
      Unified, simple data access python library for data & facts about C. elegans anatomy
      metadatardf
      Python
      •
      MIT License
      •49•155•47•2•Updated Jul 29, 2024Jul 29, 2024

    • openworm_docs

      Public
      Documentation for OpenWorm, i.e. docs.openworm.org
      Python
      •26•44•13•0•Updated Jul 2, 2024Jul 2, 2024

    • MetaWorm

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •8•2•0•0•Updated Jun 30, 2024Jun 30, 2024

    • .github

      Public
      The OpenWorm organisation template repository.
      Python
      •0•3•1•0•Updated Jun 3, 2024Jun 3, 2024

    • NemaNode

      Public
      Interactive map of neural connections in the nematode C. elegans. Online at http://nemanode.org.
      JavaScript
      •
      GNU General Public License v3.0
      •5•1•0•0•Updated May 30, 2024May 30, 2024

    • muscle_model

      Public
      Model of C elegans body wall muscle based on Boyle & Cohen 2008
      Jupyter Notebook
      •
      Other
      •24•47•17•1•Updated May 28, 2024May 28, 2024

    • VarshneyEtAl2011

      Public
      C. elegans connectome analysis
      MATLAB
      •2•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • wormneuroatlas

      Public
      Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/
      Python
      •
      GNU General Public License v3.0
      •6•2•0•0•Updated Feb 9, 2024Feb 9, 2024

    • bt-gsoc-2019

      Public
      End to end process of the Framework including a BitTorrent Client, Access Control and Data Integrity checks.
      bittorrent-clienttorrents
      Python
      •1•1•1•1•Updated Jan 29, 2024Jan 29, 2024

    • NeuroPAL

      Public
      Scripts to analyse and convert NeuroPAL datasets
      neurosciencecelegansopenworm3dneuroml
      Jupyter Notebook
      •0•4•0•0•Updated Nov 21, 2023Nov 21, 2023

    • JohnsonMailler_MuscleModel

      Public
      C. elegans muscle model from Johnson & Mailler 2015
      HTML
      •1•2•3•0•Updated Nov 21, 2023Nov 21, 2023