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techniques.html
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<span class="menu-text"><span class="chapter-number">29</span> <span class="chapter-title">Esophagus</span></span></a>
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<span class="menu-text"><span class="chapter-number">30</span> <span class="chapter-title">Stomach</span></span></a>
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<span class="menu-text"><span class="chapter-number">31</span> <span class="chapter-title">Gastritis</span></span></a>
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<span class="menu-text"><span class="chapter-number">32</span> <span class="chapter-title">Duodenum</span></span></a>
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<span class="menu-text"><span class="chapter-number">33</span> <span class="chapter-title">Colon</span></span></a>
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<span class="menu-text"><span class="chapter-number">34</span> <span class="chapter-title">Crohn’s Disease</span></span></a>
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<span class="menu-text"><span class="chapter-number">36</span> <span class="chapter-title">Benign Liver Tumors</span></span></a>
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<span class="menu-text"><span class="chapter-number">37</span> <span class="chapter-title">Pancreas</span></span></a>
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<span class="menu-text"><span class="chapter-number">38</span> <span class="chapter-title">Pancreas Ductal Adenocarcinoma</span></span></a>
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<span class="menu-text"><span class="chapter-number">39</span> <span class="chapter-title">Gallbladder</span></span></a>
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<span class="menu-text"><span class="chapter-number">40</span> <span class="chapter-title">Ampulla of Vater</span></span></a>
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<span class="menu-text"><span class="chapter-number">42</span> <span class="chapter-title">Abdomen</span></span></a>
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<span class="menu-text"><span class="chapter-number">44</span> <span class="chapter-title">Genital System</span></span></a>
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<span class="menu-text"><span class="chapter-number">45</span> <span class="chapter-title">Cervix</span></span></a>
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<span class="menu-text"><span class="chapter-number">46</span> <span class="chapter-title">Endometrium</span></span></a>
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<span class="menu-text"><span class="chapter-number">47</span> <span class="chapter-title">Endometriosis</span></span></a>
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<span class="menu-text"><span class="chapter-number">49</span> <span class="chapter-title">Kidney Tumors / Renal Tumors</span></span></a>
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<span class="menu-text"><span class="chapter-number">50</span> <span class="chapter-title">Prostate</span></span></a>
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<span class="menu-text"><span class="chapter-number">51</span> <span class="chapter-title">Pituitary Adenoma</span></span></a>
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<span class="menu-text"><span class="chapter-number">52</span> <span class="chapter-title">Breast Tumors</span></span></a>
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<span class="menu-text"><span class="chapter-number">53</span> <span class="chapter-title">Nasopharynx</span></span></a>
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<span class="menu-text"><span class="chapter-number">54</span> <span class="chapter-title">Ear</span></span></a>
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<span class="menu-text"><span class="chapter-number">55</span> <span class="chapter-title">Salivary Gland</span></span></a>
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<span class="menu-text"><span class="chapter-number">56</span> <span class="chapter-title">Glioma</span></span></a>
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<span class="menu-text"><span class="chapter-number">57</span> <span class="chapter-title">Meningioma</span></span></a>
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<span class="menu-text"><span class="chapter-number">58</span> <span class="chapter-title">Vascular Lesions</span></span></a>
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<span class="menu-text"><span class="chapter-number">59</span> <span class="chapter-title">Bone Tumors</span></span></a>
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<h2 id="toc-title">Table of contents</h2>
<ul>
<li><a href="#sec-histochemistry" id="toc-sec-histochemistry" class="nav-link active" data-scroll-target="#sec-histochemistry"><span class="header-section-number">1.1</span> Histochemistry</a></li>
<li><a href="#sec-mucin" id="toc-sec-mucin" class="nav-link" data-scroll-target="#sec-mucin">Mucin</a></li>
<li><a href="#sec-chromogenic-in-situ-hybridization-cish" id="toc-sec-chromogenic-in-situ-hybridization-cish" class="nav-link" data-scroll-target="#sec-chromogenic-in-situ-hybridization-cish"><span class="header-section-number">1.2</span> Chromogenic in situ hybridization (CISH)</a></li>
<li><a href="#sec-her2-cish" id="toc-sec-her2-cish" class="nav-link" data-scroll-target="#sec-her2-cish">HER2 - CISH</a></li>
<li><a href="#sec-immunohistochemistry" id="toc-sec-immunohistochemistry" class="nav-link" data-scroll-target="#sec-immunohistochemistry"><span class="header-section-number">1.3</span> Immunohistochemistry</a></li>
<li><a href="#sec-trypsin" id="toc-sec-trypsin" class="nav-link" data-scroll-target="#sec-trypsin">trypsin - trypsin immunohistochemistry</a></li>
<li><a href="#sec-artefacts" id="toc-sec-artefacts" class="nav-link" data-scroll-target="#sec-artefacts"><span class="header-section-number">1.4</span> Artefacts</a></li>
<li><a href="#sec-seed" id="toc-sec-seed" class="nav-link" data-scroll-target="#sec-seed">seed - seed, food remnant</a></li>
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<h1 class="title"><span id="sec-techniques-used-in-pathology" class="quarto-section-identifier"><span class="chapter-number">1</span> <span class="chapter-title">Techniques Used in Pathology</span></span></h1>
<div class="quarto-categories">
<div class="quarto-category">technique</div>
<div class="quarto-category">teknik</div>
<div class="quarto-category">histochemistry</div>
<div class="quarto-category">CISH</div>
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<div class="quarto-title-meta-heading">Published</div>
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<p class="date">March 26, 2024</p>
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<section id="sec-histochemistry" class="level2 cell" data-number="1.1">
<h2 data-number="1.1" class="anchored" data-anchor-id="sec-histochemistry"><span class="header-section-number">1.1</span> Histochemistry</h2>
</section>
<section id="sec-mucin" class="level3 cell">
<h3 class="anchored" data-anchor-id="sec-mucin">Mucin</h3>
</section>
<section id="sec-mucicarmine" class="level4 cell">
<h4 class="anchored" data-anchor-id="sec-mucicarmine">Mucicarmine</h4>
</section>
<div class="tabset-margin-container"></div><div class="panel-tabset">
<ul class="nav nav-tabs" role="tablist"><li class="nav-item" role="presentation"><a class="nav-link active" id="tabset-1-1-tab" data-bs-toggle="tab" data-bs-target="#tabset-1-1" role="tab" aria-controls="tabset-1-1" aria-selected="true" aria-current="page">WSI - Link</a></li><li class="nav-item" role="presentation"><a class="nav-link" id="tabset-1-2-tab" data-bs-toggle="tab" data-bs-target="#tabset-1-2" role="tab" aria-controls="tabset-1-2" aria-selected="false">WSI</a></li></ul>
<div class="tab-content">
<div id="tabset-1-1" class="tab-pane active" role="tabpanel" aria-labelledby="tabset-1-1-tab">
<div class="cell">
<p><strong>Mucicarmine histochemistry stain showing intracellular mucin in a normal colon</strong></p>
<p><a href="https://images.patolojiatlasi.com/mucin/mucicarmine.html"><img src="./screenshots/thumbnail_mucicarmine.png" class="img-fluid" style="width:25.0%" alt="Click for Full Screen WSI"></a> <a href="https://images.patolojiatlasi.com/mucin/mucicarmine.html">Click for Full Screen WSI</a></p>
</div>
</div>
<div id="tabset-1-2" class="tab-pane" role="tabpanel" aria-labelledby="tabset-1-2-tab">
<div class="cell">
<p>See Microscopy with viewer:</p>
<iframe src="https://images.patolojiatlasi.com/mucin/mucicarmine.html" style="height:600px;width:100%;" data-external="1">
</iframe>
</div>
</div>
</div>
</div>
<section id="sec-PASAB" class="level4 cell">
<h4 class="anchored" data-anchor-id="sec-PASAB">PASAB - Alcian blue/periodic acid–Schiff</h4>
</section>
<div class="tabset-margin-container"></div><div class="panel-tabset">
<ul class="nav nav-tabs" role="tablist"><li class="nav-item" role="presentation"><a class="nav-link active" id="tabset-2-1-tab" data-bs-toggle="tab" data-bs-target="#tabset-2-1" role="tab" aria-controls="tabset-2-1" aria-selected="true">WSI - Link</a></li><li class="nav-item" role="presentation"><a class="nav-link" id="tabset-2-2-tab" data-bs-toggle="tab" data-bs-target="#tabset-2-2" role="tab" aria-controls="tabset-2-2" aria-selected="false">WSI</a></li></ul>
<div class="tab-content">
<div id="tabset-2-1" class="tab-pane active" role="tabpanel" aria-labelledby="tabset-2-1-tab">
<div class="cell">
<p><strong>Alcian blue/periodic acid–Schiff</strong></p>
<p><a href="https://images.patolojiatlasi.com/PASAB/PASAB.html"><img src="./screenshots/thumbnail_PASAB-PASAB.png" class="img-fluid" style="width:25.0%" alt="Click for Full Screen WSI"></a> <a href="https://images.patolojiatlasi.com/PASAB/PASAB.html">Click for Full Screen WSI</a></p>
</div>
</div>
<div id="tabset-2-2" class="tab-pane" role="tabpanel" aria-labelledby="tabset-2-2-tab">
<div class="cell">
<p>See Microscopy with viewer:</p>
<iframe src="https://images.patolojiatlasi.com/PASAB/PASAB.html" style="height:600px;width:100%;" data-external="1">
</iframe>
</div>
</div>
</div>
</div>
<section id="sec-chromogenic-in-situ-hybridization-cish" class="level2 cell" data-number="1.2">
<h2 data-number="1.2" class="anchored" data-anchor-id="sec-chromogenic-in-situ-hybridization-cish"><span class="header-section-number">1.2</span> Chromogenic in situ hybridization (CISH)</h2>
</section>
<section id="sec-her2-cish" class="level3 cell">
<h3 class="anchored" data-anchor-id="sec-her2-cish">HER2 - CISH</h3>
</section>
<div class="tabset-margin-container"></div><div class="panel-tabset">
<ul class="nav nav-tabs" role="tablist"><li class="nav-item" role="presentation"><a class="nav-link active" id="tabset-3-1-tab" data-bs-toggle="tab" data-bs-target="#tabset-3-1" role="tab" aria-controls="tabset-3-1" aria-selected="true">WSI - Link</a></li><li class="nav-item" role="presentation"><a class="nav-link" id="tabset-3-2-tab" data-bs-toggle="tab" data-bs-target="#tabset-3-2" role="tab" aria-controls="tabset-3-2" aria-selected="false">WSI</a></li></ul>
<div class="tab-content">
<div id="tabset-3-1" class="tab-pane active" role="tabpanel" aria-labelledby="tabset-3-1-tab">
<div class="cell">
<p><strong>Chromogenic in situ hybridization (CISH)</strong></p>
<p><a href="https://images.patolojiatlasi.com/her2-cish/cish.html"><img src="./screenshots/thumbnail_cish.png" class="img-fluid" style="width:25.0%" alt="Click for Full Screen WSI"></a> <a href="https://images.patolojiatlasi.com/her2-cish/cish.html">Click for Full Screen WSI</a></p>
</div>
</div>
<div id="tabset-3-2" class="tab-pane" role="tabpanel" aria-labelledby="tabset-3-2-tab">
<div class="cell">
<p>See Microscopy with viewer:</p>
<iframe src="https://images.patolojiatlasi.com/her2-cish/cish.html" style="height:600px;width:100%;" data-external="1">
</iframe>
</div>
</div>
</div>
</div>
<section id="sec-immunohistochemistry" class="level2 cell" data-number="1.3">