Update protobuf deps to match pigweed requirements

Author: andy31415

scripts/setup/constraints.txt

@@ -163,7 +163,7 @@ portpicker==1.5.2
     #   mobly
 prompt-toolkit==3.0.43
     # via ipython
-protobuf==4.24.4
+protobuf==5.28.3
     # via
     #   -r requirements.all.txt
     #   mypy-protobuf
@@ -253,7 +253,7 @@ traitlets==5.9.0
     # via
     #   ipython
     #   matplotlib-inline
-types-protobuf==4.24.0.2
+types-protobuf==5.29.1.20250208
     # via
     #   -r requirements.all.txt
     #   mypy-protobuf

scripts/setup/requirements.all.txt

@@ -40,8 +40,11 @@ watchdog
 build==0.8.0
 mypy==1.10.1
 mypy-protobuf==3.5.0
-protobuf==4.24.4
-types-protobuf==4.24.0.2
+protobuf==5.28.3
+types-protobuf==5.29.1.20250208
+mypy-protobuf
+protobuf
+types-protobuf
 
 cffi==1.15.0; python_version < "3.13"
 cffi==1.17.1; python_version >= "3.13"