Merge pull request #7 from pc494

Bugfix and cosmetic changes

Author: pc494

.gitignore

@@ -0,0 +1 @@
+data/

02 - Clustering Orientations.ipynb

@@ -361,8 +361,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "cluster_means_axangle = AxAngle.from_rotation(cluster_means)\n",
-    "cluster_means_recentered.axis"
+    "cluster_means_axangle = AxAngle.from_rotation(cluster_means)"
    ]
   },
   {

03 - Clustering Misorientations.ipynb

@@ -216,16 +216,16 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from itertools import combinations_with_replacement as icombinations\n",
-    "from tqdm import tqdm_notebook\n",
-    "distance = np.empty((misori.size, misori.size))\n",
+    "#from itertools import combinations_with_replacement as icombinations\n",
+    "#from tqdm import tqdm_notebook\n",
+    "#distance = np.empty((misori.size, misori.size))\n",
     "\n",
-    "for i, j in tqdm_notebook(list(icombinations(range(misori.size), 2))):\n",
-    "    m_1, m_2 = misori[i], misori[j]\n",
-    "    mismisori = D6.outer(~m_1).outer(D6).outer(D6).outer(m_2).outer(D6)\n",
-    "    d = mismisori.angle.data.min(axis=(0, 2, 3, 5))\n",
-    "    distance[i, j] = d\n",
-    "    distance[j, i] = d"
+    "#for i, j in tqdm_notebook(list(icombinations(range(misori.size), 2))):\n",
+    "#    m_1, m_2 = misori[i], misori[j]\n",
+    "#    mismisori = D6.outer(~m_1).outer(D6).outer(D6).outer(m_2).outer(D6)\n",
+    "#    d = mismisori.angle.data.min(axis=(0, 2, 3, 5))\n",
+    "#    distance[i, j] = d\n",
+    "#    distance[j, i] = d"
    ]
   },
   {