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sbg-caller-scatter-and-merge_2019_09_04_20_06_32.bco.json
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{
"bco_spec_version": "https://w3id.org/biocompute/1.3.0/",
"bco_id": "http://biocompute.sbgenomics.com/bco/78fb55a1-39bc-4d8c-9c2a-993157bcef3e",
"checksum": "8698f1d85940acde0f675d0d507b7d007b7b24b3c80ea907995aac5500858594",
"provenance_domain": {
"name": "SB Caller Scatter and Merge",
"version": "1.0.0",
"review": [],
"derived_from": "https://api.sbgenomics.com/v2/apps/jbrowning/parallel-graph-caller/sbg-caller-scatter-and-merge/0/raw/",
"obsolete_after": "2019-09-04T00:00:00+0000",
"embargo": ["2019-09-04T00:00:00+0000", "2019-09-04T00:00:00+0000"],
"created": "2019-09-04T00:00:00+0000",
"modified": "2019-09-04T00:00:00+0000",
"contributors": [],
"license": "https://spdx.org/licenses/CC-BY-4.0.html"
},
"usability_domain": "",
"extension_domain": {
"fhir_extension": {
"fhir_endpoint": "",
"fhir_version": "",
"fhir_resources": {}
},
"scm_extension": {
"scm_repository": "",
"scm_type": "git",
"scm_commit": "",
"scm_path": "",
"scm_preview": ""
}
},
"description_domain": {
"keywords": [],
"xref": [],
"platform": "Seven Bridges Platform",
"pipeline_steps": [
{
"step_number": "1",
"name": "#VCFtools_Concat",
"description": "VCFtools concat concatenates VCF files (for example, splitting by chromosome). Note that the input and output VCFs will have the same number of columns. The script does not merge VCFs by position (see also vcf-merge).\n\nIn the default mode, this tool only checks that all files have the same columns. When run with the -s option, it will perform a partial merge sort and look at a limited number of open files simultaneously.",
"version": "0.1.14",
"prerequisite": [],
"input_list": [],
"output_list": []
},
{
"step_number": "2",
"name": "#VCFtools_Sort_1",
"description": "MODIFIED FROM THE PUBLIC APP TO EXPOSE OUTPUT NAME VCFtools sort sorts a VCF file.",
"version": "0.1.14",
"prerequisite": [],
"input_list": [],
"output_list": []
},
{
"step_number": "3",
"name": "#SBG_variant_caller",
"description": "",
"version": null,
"prerequisite": [],
"input_list": [],
"output_list": []
}
]
},
"execution_domain": {
"script": "https://api.sbgenomics.com/v2/apps/jbrowning/parallel-graph-caller/sbg-caller-scatter-and-merge/0/raw/",
"script_driver": "Seven Bridges Common Workflow Language Executor",
"software_prerequisites": [],
"external_data_endpoints": [],
"environment_variables": []
},
"parametric_domain": [],
"io_domain": {
"input_subdomain": [
{
"uri": [
{
"filename": "",
"uri": "",
"access_time": ""
}
]
}
],
"output_subdomain": [
{
"mediatype": "",
"uri": [
{
"uri": "",
"access_time": ""
}
]
}
]
},
"error_domain": {
"empirical_error": [],
"algorithmic_error": []
}
}