update cran-comments

Author: thomasp85

cran-comments.md

@@ -1,66 +1,220 @@
-This is a patch release responding to changes in R-devel concerning the behavior
-of `is.atomic()`. Further, it contains the removal of maptools and rgeos which 
-is set for archival soon
+This is a large minor release with both a lot of new features and a complete 
+rewrite of part of the internals. As a result, this release does break a range 
+of reverse dependencies. All of them has been informed very well in advance (4 
+weeks) and have been provided with patches to fix their issues. The remaining
+problematic reverse dependencies were further notified 2 weeks ago to remind 
+them to submit a fix, so we believe we have been very lenient towards them.
 
 ## revdepcheck results
 
-We checked 4771 reverse dependencies (4716 from CRAN + 55 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 4935 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 2 new problems
- * We failed to check 42 packages
+ * We saw 56 new problems
+ * We failed to check 13 packages
 
 Issues with CRAN packages are summarised below.
 
 ### New problems
 (This reports the first line of each new failure)
 
-* jfa
-  checking re-building of vignette outputs ... WARNING
+* AcademicThemes
+  checking tests ... ERROR
+
+* afex
+  checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* archeoViz
+  checking tests ... ERROR
+
+* assignPOP
+  checking tests ... ERROR
+
+* bioassays
+  checking tests ... ERROR
+
+* BOSO
+  checking re-building of vignette outputs ... ERROR
+
+* breakDown
+  checking tests ... ERROR
+
+* canadianmaps
+  checking tests ... ERROR
+
+* CAST
+  checking installed package size ... NOTE
+
+* CEDA
+  checking re-building of vignette outputs ... ERROR
+
+* cobalt
+  checking examples ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* constructive
+  checking tests ... ERROR
+
+* docxtools
+  checking tests ... ERROR
+
+* dynamAedes
+  checking re-building of vignette outputs ... ERROR
+
+* EcoDiet
+  checking re-building of vignette outputs ... ERROR
+
+* epos
+  checking tests ... ERROR
+
+* feasts
+  checking examples ... ERROR
+  checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* fitODBODRshiny
+  checking examples ... ERROR
+
+* fmeffects
+  checking examples ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* genekitr
+  checking examples ... ERROR
+
+* geomtextpath
+  checking tests ... ERROR
+
+* ggedit
+  checking examples ... ERROR
+
+* gghdr
+  checking examples ... ERROR
+  checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* ggiraph
+  checking examples ... ERROR
+  checking tests ... ERROR
+
+* ggiraphExtra
+  checking examples ... ERROR
+
+* ggparallel
+  checking tests ... ERROR
+
+* ggprism
+  checking examples ... ERROR
+  checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* ggraph
+  checking examples ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* ggside
+  checking examples ... ERROR
+  checking tests ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* ggstance
+  checking tests ... ERROR
+
+* ggstatsplot
+  checking examples ... ERROR
+  checking tests ... ERROR
+
+* ghibli
+  checking tests ... ERROR
+
+* glancedata
+  checking tests ... ERROR
+
+* grafify
+  checking tests ... ERROR
+
+* inTextSummaryTable
+  checking tests ... ERROR
+
+* LMoFit
+  checking re-building of vignette outputs ... ERROR
+
+* manydata
+  checking tests ... ERROR
+
+* MiscMetabar
+  checking examples ... ERROR
+  checking re-building of vignette outputs ... ERROR
+
+* miWQS
+  checking re-building of vignette outputs ... ERROR
+
+* NAIR
+  checking tests ... ERROR
+
+* OpenLand
+  checking tests ... ERROR
+
+* platetools
+  checking tests ... ERROR
+
+* plot3logit
+  checking re-building of vignette outputs ... ERROR
+
+* PTXQC
+  checking examples ... ERROR
+  checking tests ... ERROR
+
+* rabhit
+  checking re-building of vignette outputs ... ERROR
+
+* santaR
+  checking tests ... ERROR
+
+* saros
+  checking examples ... ERROR
+  checking tests ... ERROR
+
+* scCustomize
+  checking examples ... ERROR
+
+* scdhlm
+  checking tests ... ERROR
+
+* see
+  checking examples ... ERROR
+
+* spqdep
+  checking re-building of vignette outputs ... ERROR
+
+* TCIU
+  checking re-building of vignette outputs ... ERROR
+
+* tmt
+  checking tests ... ERROR
+
+* tvthemes
+  checking tests ... ERROR
+
+* ufs
+  checking examples ... ERROR
 
-* SCORPIUS
+* visR
+  checking examples ... ERROR
   checking tests ... ERROR
 
 ### Failed to check
 
-* ale             (NA)
-* aPEAR           (NA)
-* bayesdfa        (NA)
-* BrailleR        (NA)
-* CausalImpact    (NA)
-* CensMFM         (NA)
-* cinaR           (NA)
-* fdacluster      (NA)
-* genekitr        (NA)
-* ggPMX           (NA)
-* grandR          (NA)
-* HeckmanEM       (NA)
-* immcp           (NA)
-* loon.ggplot     (NA)
-* MACP            (NA)
-* MarketMatching  (NA)
-* MARVEL          (NA)
-* MSclassifR      (NA)
-* nlmixr2         (NA)
-* nlmixr2extra    (NA)
-* nlmixr2plot     (NA)
-* nlmixr2rpt      (NA)
-* numbat          (NA)
-* oHMMed          (NA)
-* OlinkAnalyze    (NA)
-* OpenMx          (NA)
-* phylosem        (NA)
-* PsychWordVec    (NA)
-* RcppCensSpatial (NA)
-* rmsb            (NA)
-* rstanarm        (NA)
-* RVA             (NA)
-* SCpubr          (NA)
-* SSVS            (NA)
-* streamDAG       (NA)
-* TestAnaAPP      (NA)
-* tidySEM         (NA)
-* tinyarray       (NA)
-* TOmicsVis       (NA)
-* valse           (NA)
-* vivid           (NA)
-* xpose.nlmixr2   (NA)
+* bayesdfa         (NA)
+* ctsem            (NA)
+* geostan          (NA)
+* ggtern           (NA)
+* grandR           (NA)
+* rmsb             (NA)
+* rstanarm         (NA)
+* Seurat           (NA)
+* streamDAG        (NA)
+* treestats        (NA)
+* TriDimRegression (NA)
+* triptych         (NA)
+* valse            (NA)