- Expose
max_iter_harmony
as a new top-level argument, in addition to the previously exposedmax_iter_kmeans
. This more closely resembles the original interface in the harmony R package. Thanks to @pinin4fjords for pull request #8
-
Fix a bug in the LISI code that sometimes causes computation to break. Thanks to @tariqdaouda for reporting it in issue #1
-
Fix a bug that prevents controlling the number of iterations. Thanks to @liboxun for reporting it in issue #3
-
Fix a bug causing slightly different results than expected. Thanks to @bli25broad for pull request #2
-
Add support for multiple categorical batch variables.
- Speed up the Harmony algorithm. It should now be as fast as the R package.
- Add Local Inverse Simpson Index (LISI) functions from the lisi R package. https://github.com/immunogenomics/LISI
- Initial release. Code ported directly from the harmony R package. https://github.com/immunogenomics/harmony