DESCRIPTION

Package: doppelgangR
Title: Identify likely duplicate samples from genomic or meta-data
Version: 1.35.0
Authors@R: c(person("Levi", "Waldron", email = "lwaldron.research@gmail.com",
    role = c("aut", "cre")),
    person("Markus", "Reister", email = "markus.riester@novartis.com",
    role = c("aut", "ctb")),
    person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
    role = "ctb"))
Description: The main function is doppelgangR(), which takes as minimal
    input a list of ExpressionSet object, and searches all list
    pairs for duplicated samples.  The search is based on the
    genomic data (exprs(eset)), phenotype/clinical data
    (pData(eset)), and "smoking guns" - supposedly unique
    identifiers found in pData(eset).
Depends:
    R (>= 3.5.0),
    Biobase,
    BiocParallel
Imports:
    sva,
    impute,
    digest,
    mnormt,
    methods,
    grDevices,
    graphics,
    stats,
    SummarizedExperiment,
    utils
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    curatedOvarianData,
    testthat
biocViews: ImmunoOncology, RNASeq, Microarray, GeneExpression, QualityControl
License: GPL (>=2.0)
Encoding: UTF-8
URL: https://github.com/lwaldron/doppelgangR
BugReports: https://github.com/lwaldron/doppelgangR/issues
VignetteBuilder: knitr
RoxygenNote: 7.1.0