diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 8ba7ddc..f16a381 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,12 +1,18 @@ repos: - repo: https://github.com/psf/black - rev: 22.10.0 + rev: 22.3.0 hooks: - id: black args: ["-l", "120"] language_version: python3 - - repo: https://github.com/PyCQA/isort - rev: 5.12.0 - hooks: - - id: isort - args: ["--profile", "black"] + - repo: https://github.com/PyCQA/isort + rev: 5.12.0 + hooks: + - id: isort + args: ["--profile", "black"] + - repo: https://github.com/astral-sh/ruff-pre-commit + # Ruff version. + rev: v0.0.290 + hooks: + - id: ruff + args: ["--fix"] diff --git a/poetry.lock b/poetry.lock index d2233fb..219db2f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,5 @@ +# This file is automatically @generated by Poetry and should not be changed by hand. + [[package]] name = "atomicwrites" version = "1.4.1" @@ -5,20 +7,95 @@ description = "Atomic file writes." category = "dev" optional = 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"poetry-dynamic-versioning"] build-backend = "poetry_dynamic_versioning.backend" [tool.poetry.extras] -dev = ["pytest", "pytest-cov", "mypy"] +dev = ["pytest", "pytest-cov", "mypy", "ruff", "black"] [tool.mypy] plugins = "numpy.typing.mypy_plugin" @@ -45,3 +47,7 @@ module = [ ] ignore_missing_imports = true +[tool.ruff] +line-length = 120 +select = ['E', 'F', 'W', 'I'] + diff --git a/ridgeplot/__init__.py b/ridgeplot/__init__.py index d4b741b..7812e86 100644 --- a/ridgeplot/__init__.py +++ b/ridgeplot/__init__.py @@ -1 +1 @@ -from ridgeplot.ridge_plot import RidgePlotError, ridgeplot +from ridgeplot.ridge_plot import RidgePlotError, ridgeplot # noqa: F401 diff --git a/ridgeplot/colors.py b/ridgeplot/colors.py index 18b4b8c..fd794c4 100644 --- a/ridgeplot/colors.py +++ b/ridgeplot/colors.py @@ -1,5 +1,5 @@ """This module collects functions for manipulating color legends -for matplotlib plots and a collections of color palettes. +for matplotlib plots and a collections of color palettes. """ from collections import OrderedDict @@ -84,6 +84,7 @@ "#686b69", "#417d55", ], + purples=["#9c6cf8", "#9c14e7", "#460ecf", "#54186f", "#f75af8"], ) @@ -91,14 +92,15 @@ def ordered_set(xs: List[str]) -> List[str]: """ this is a simple function to make a set according to the order of the input list - because python set is unordered, https://stackoverflow.com/questions/9792664/converting-a-list-to-a-set-changes-element-order + because python set is unordered, see: + https://stackoverflow.com/questions/9792664/converting-a-list-to-a-set-changes-element-order Args: xs: list of input values Returns: a list of unique input values in the order of how they arranged in the input list - """ + """ # noqa: E501 xs = list(xs) return sorted(set(xs), key=xs.index) @@ -215,7 +217,8 @@ def transform(self, categories: List[str]) -> List[str]: def fit_transform(self, categories: List[str], colors: List[str] = ColorPalette["invitae"]) -> List[str]: """ - first map the color to the categories, and then return the corresponding color for each category in the input list + first map the color to the categories, and then return the + corresponding color for each category in the input list Example: ``` diff --git a/ridgeplot/ridge_plot.py b/ridgeplot/ridge_plot.py index 5b6a349..bc86752 100644 --- a/ridgeplot/ridge_plot.py +++ b/ridgeplot/ridge_plot.py @@ -1,4 +1,4 @@ -"""This module contains the main function to plot +"""This module contains the main function to plot [ridgeplots](https://clauswilke.com/blog/2017/09/15/goodbye-joyplots/). """ from __future__ import annotations @@ -45,10 +45,13 @@ def ridgeplot( Args: ax: a matplotlib ax object for writing the plot - data: a dictionary of data, key is the label of the group, values are the data values in the group + data: a dictionary of data, key is the label of + the group, values are the data values in the group xlim: x-limits for the plot (xmin, xmax) - fill_colors: colors for the fill under the distribution, must be same length as input data (default: all steelblue) - line_colors: colors for the line drawing the distribution, must be same length as input data (default: all white) + fill_colors: colors for the fill under the distribution, + must be same length as input data (default: all steelblue) + line_colors: colors for the line drawing the distribution, + must be same length as input data (default: all white) label_size: label size of the name of each distribution fill_alpha: alpha value for the fill under the distribution (default: 0.5)