v1.8.0

Fix for [#27]: When downloading SRA files, the verification process gets stuck due to vdb-validate. This issue occurs because, starting from sra-tools version > 3.0.0, if vdb-validate is run without specifying the path to the SRA file, it attempts to re-download the file, causing the process to get stuck.

For example:
Running vdb-validate SRR931847 will hang, but vdb-validate ./SRR931847 will execute successfully.

v1.7.0

• Fixed the issue mentioned in #26. The cause was that the data was paired-end but had only one link, such as SRR23680070.

v1.6.0

• Input file can contain accessions from different databases.
• -p and -a can be used simultaneously, with -a taking priority.
• Fixed some bugs when retrying download data from GSA.

v1.5.0

• Fixed the bugs mentioned in #19.

v1.4.0

• Fixed the bugs mentioned in #16 and #17.

v1.3.0

• Dependency update for aspera-cli: The version requirement for aspera-cli has been updated from aspera-cli to aspera-cli=4.14.0.

v1.2.0

• New -s, --speed option to set the download speed limit (MB/s) (default: 1000 MB/s). Such as iseq -i SRR7706354 -s 10
• Dependency update for sra-tools: The version requirement for sra-tools has been updated from sra-tools=2.11 to sra-tools>=2.11.0.

v1.1.0

• New -e option for merging FASTQ files:
  Added a -e option to merge multiple FASTQ files into a single file for each Experiment (-e ex), Sample (-e sa), or Study (-e st).

• New -i option for input:
  iSeq can now accept a file containing multiple accession numbers as input by -i fileName.

• API change for GSA metadata download:
  The API endpoint has been updated from getRunInfo to getRunInfoByCra for downloading GSA metadata.

More Updates

• Save result to personal directory:
  The output results will now be saved in the user's personal directory by -o option.

• Updated regex for SAMC matching:
  The matching pattern for SAMC has been changed from SAMC[A-Z]?[0-9]+ to SAMC[0-9]+.

• Fix some bugs

iSeq first release

Today is a day of celebration as we proudly announce the first release of iSeq on GitHub!

This isn't merely a software launch; it's the commencement of a collaborative journey where we extend an invitation to developers, researchers, and sequencing enthusiasts worldwide to partner with us in advancing the frontiers of sequencing data retrieval.