KnoxAI - A Graph-based Framework for Design Prediction

knoxAI is a modular deep learning framework for graph-based machine learning, built with PyTorch Geometric and Flask. It supports regression, classification, and ranking tasks on graph-structured data, and provides a REST API for model training, evaluation, and prediction.

Quickstart

Installation

1. Clone this repository
2. Install dependencies pip install -r requirements.txt
3. Run the Flask app: python app.py

Use with Knox or Standalone

Manuscripts

Nicholas Roehner, James Roberts, Andrei Lapets, Dany Gould, Vidya Akavoor, Lucy Qin, D. Benjamin Gordon, Christopher Voigt, and Douglas Densmore. GOLDBAR: A Framework for Combinatorial Biological Design. ACS Synthetic Biology Article ASAP (2024). DOI: https://pubs.acs.org/doi/full/10.1021/acssynbio.4c00296